Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47136 * 2 1 4 4 C 1.46903 * 111.00243 * 185.02381 * 3 2 1 5 5 H 1.08994 * 109.24430 * 31.17325 * 4 3 2 6 6 C 1.52727 * 109.24999 * 271.74831 * 4 3 2 7 7 C 1.53330 * 108.38567 * 188.57533 * 6 4 3 8 8 C 1.52731 * 108.37599 * 69.90158 * 7 6 4 9 9 C 1.50645 * 110.59193 * 308.87668 * 8 7 6 10 10 C 1.38790 * 117.68412 * 197.45137 * 9 8 7 11 11 C 1.38574 * 120.49050 * 180.56644 * 10 9 8 12 12 O 1.35753 * 120.18938 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00162 * 185.66195 * 12 11 10 14 14 H 1.07995 * 120.00105 * 354.92492 * 13 12 11 15 15 C 1.38656 * 119.99900 * 174.91437 * 13 12 11 16 16 N 1.31553 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99971 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47075 * 60.00198 * 17 15 13 19 19 H 1.48499 * 109.47531 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47318 * 300.00587 * 17 15 13 21 21 C 1.38913 * 119.62526 * 359.97438 * 11 10 9 22 22 C 1.37791 * 119.69442 * 359.88623 * 21 11 10 23 23 C 1.37745 * 122.56194 * 17.79081 * 9 8 7 24 24 H 1.08999 * 109.47292 * 299.99924 * 1 2 3 25 25 H 1.09001 * 109.46840 * 60.00374 * 1 2 3 26 26 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 240.00076 * 2 1 3 28 28 H 1.09001 * 109.46840 * 119.99626 * 2 1 3 29 29 H 1.00896 * 111.00353 * 61.06515 * 3 2 1 30 30 H 1.09003 * 109.68148 * 308.30209 * 6 4 3 31 31 H 1.09001 * 109.67995 * 68.84635 * 6 4 3 32 32 H 1.08999 * 109.68350 * 310.18162 * 7 6 4 33 33 H 1.08996 * 109.71171 * 189.64063 * 7 6 4 34 34 H 1.08995 * 109.24609 * 188.58887 * 8 7 6 35 35 H 1.09000 * 109.21753 * 69.14280 * 8 7 6 36 36 H 1.07995 * 119.75591 * 0.58195 * 10 9 8 37 37 H 0.97005 * 119.99928 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.15018 * 179.85705 * 21 11 10 39 39 H 1.08002 * 119.67304 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4832 1.4260 -0.1201 5 1 3.8195 0.5718 -0.7077 6 6 4.1049 1.3540 1.2730 7 6 5.6106 1.6139 1.1447 8 6 5.8161 3.0820 0.7771 9 6 4.9653 3.4555 -0.4086 10 6 5.2929 4.6148 -1.0978 11 6 4.5422 5.0193 -2.1901 12 8 4.8684 6.1541 -2.8600 13 6 4.0287 6.5508 -3.8374 14 1 3.1882 5.9306 -4.1119 15 6 4.2440 7.7551 -4.4899 16 7 5.2680 8.5104 -4.1557 17 14 3.0801 8.3051 -5.8435 18 1 1.7072 8.4359 -5.2929 19 1 3.5267 9.6167 -6.3778 20 1 3.0814 7.2995 -6.9364 21 6 3.4547 4.2565 -2.5964 22 6 3.1347 3.1047 -1.9111 23 6 3.8890 2.6988 -0.8165 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7105 1.8778 0.8243 30 1 3.6551 2.1111 1.9154 31 1 3.9381 0.3646 1.6988 32 1 6.0277 0.9781 0.3638 33 1 6.1027 1.4006 2.0936 34 1 6.8654 3.2478 0.5331 35 1 5.5418 3.7065 1.6273 36 1 6.1392 5.2059 -0.7805 37 1 5.4184 9.3531 -4.6120 38 1 2.8625 4.5651 -3.4451 39 1 2.2894 2.5117 -2.2276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044745567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = -18.456839 kcal Electronic energy + Delta-G solvation = -19368.036967 eV Core-core repulsion = 16468.300469 eV Total energy + Delta-G solvation = -2899.736498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66933 -37.95038 -35.92448 -34.38222 -32.20640 -31.67898 -29.40989 -28.42554 -26.99168 -25.12005 -22.79881 -22.16496 -21.90686 -21.10920 -19.33158 -17.46692 -16.67846 -15.86697 -15.27898 -15.23561 -14.49408 -14.38153 -14.12066 -13.82164 -13.47987 -13.20742 -12.84204 -12.67686 -12.63964 -12.28465 -11.87721 -11.82308 -11.60659 -11.50631 -11.32703 -11.08517 -10.99378 -10.84925 -10.50349 -10.36852 -10.22514 -10.03777 -9.23985 -8.73785 -8.25213 -7.86078 -7.05601 -6.37872 -3.96527 2.28291 2.44841 3.17500 3.18662 3.21260 4.02549 4.23831 4.63483 4.88235 4.95540 5.00962 5.06684 5.17962 5.22537 5.31479 5.42613 5.55177 5.59909 5.65245 5.75824 5.81508 5.87001 5.89009 5.97726 6.05091 6.08200 6.13179 6.17854 6.34078 6.39029 6.56694 6.86236 7.03201 7.06859 7.22240 7.35502 7.46339 7.56292 7.64836 7.94801 8.07986 9.08135 9.80023 10.80488 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.004933 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.363551 B = 5674.399367 C = 6743.530312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.682 5.682 4 C 0.147 3.853 5 H 0.072 0.928 6 C -0.144 4.144 7 C -0.111 4.111 8 C -0.077 4.077 9 C -0.032 4.032 10 C -0.203 4.203 11 C 0.157 3.843 12 O -0.181 6.181 13 C -0.390 4.390 14 H 0.091 0.909 15 C 0.038 3.962 16 N -0.866 5.866 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.238 4.238 22 C -0.042 4.042 23 C -0.169 4.169 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.340 0.660 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.269 0.731 38 H 0.124 0.876 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -14.597 9.154 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.312 5.312 4 C 0.038 3.962 5 H 0.090 0.910 6 C -0.183 4.183 7 C -0.150 4.150 8 C -0.114 4.114 9 C -0.033 4.033 10 C -0.223 4.223 11 C 0.104 3.896 12 O -0.085 6.085 13 C -0.466 4.466 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.501 5.501 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.257 4.257 22 C -0.061 4.061 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.373 -14.129 8.410 17.014 hybrid contribution -0.387 0.071 0.143 0.419 sum -4.761 -14.059 8.553 17.131 Atomic orbital electron populations 1.21754 0.95256 1.01199 1.02470 1.21937 0.95530 0.90037 1.00053 1.60570 1.10627 1.13774 1.46270 1.20100 0.85992 0.96262 0.93893 0.90985 1.22235 0.97019 1.00842 0.98207 1.21446 0.95620 0.96876 1.01009 1.20407 0.99082 0.95725 0.96165 1.19054 0.95095 0.93716 0.95424 1.20073 1.04118 0.99639 0.98454 1.19290 0.92229 0.87425 0.90639 1.83970 1.46181 1.34353 1.43974 1.21265 1.08420 1.04807 1.12150 0.89209 1.25260 0.97499 0.95003 0.98773 1.70032 1.27307 1.12187 1.40613 0.85804 0.79548 0.78259 0.79942 1.19544 1.20346 1.19562 1.21173 1.01671 0.98357 1.04517 1.20718 0.97125 0.94800 0.93415 1.18838 0.99219 0.98597 1.00397 0.92996 0.91760 0.92633 0.91268 0.95818 0.84146 0.91629 0.92571 0.91749 0.92099 0.91153 0.91249 0.86904 0.92101 0.85805 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.21 37.16 0.38 -0.97 16 2 C 0.05 0.55 6.25 -3.83 -0.02 0.53 16 3 N -0.68 -8.53 5.31 -108.13 -0.57 -9.11 16 4 C 0.15 2.00 2.49 -69.02 -0.17 1.83 16 5 H 0.07 0.99 7.65 -51.93 -0.40 0.59 16 6 C -0.14 -1.67 5.30 -26.70 -0.14 -1.81 16 7 C -0.11 -1.31 5.98 -26.70 -0.16 -1.47 16 8 C -0.08 -1.09 5.67 -28.05 -0.16 -1.25 16 9 C -0.03 -0.59 5.74 -104.63 -0.60 -1.19 16 10 C -0.20 -4.45 9.55 -39.25 -0.37 -4.82 16 11 C 0.16 3.93 6.64 -39.21 -0.26 3.67 16 12 O -0.18 -5.31 9.76 0.05 0.00 -5.31 16 13 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 14 H 0.09 2.39 5.22 -52.49 -0.27 2.12 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.87 -25.88 13.67 55.48 0.76 -25.12 16 17 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C -0.24 -5.39 9.17 -39.50 -0.36 -5.75 16 22 C -0.04 -0.81 9.20 -39.47 -0.36 -1.18 16 23 C -0.17 -2.97 5.56 -104.54 -0.58 -3.55 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.73 7.92 -51.93 -0.41 0.31 16 28 H 0.02 0.22 8.02 -51.93 -0.42 -0.19 16 29 H 0.34 4.07 8.34 -39.29 -0.33 3.74 16 30 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 31 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.11 2.41 8.05 -52.49 -0.42 1.99 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.12 2.82 5.66 -52.49 -0.30 2.52 16 39 H 0.11 2.03 7.60 -52.49 -0.40 1.64 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -30.58 315.99 -8.56 -39.14 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.86 Total: 5.56 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.62 Total: -25.86 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.18 Total: -34.23 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: 0.00 Total: -5.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.58 -8.56 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044745567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.683 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds