Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47136 * 2 1 4 4 C 1.46903 * 111.00243 * 185.02381 * 3 2 1 5 5 H 1.08994 * 109.24430 * 31.17325 * 4 3 2 6 6 C 1.52727 * 109.24999 * 271.74831 * 4 3 2 7 7 C 1.53330 * 108.38567 * 188.57533 * 6 4 3 8 8 C 1.52731 * 108.37599 * 69.90158 * 7 6 4 9 9 C 1.50645 * 110.59193 * 308.87668 * 8 7 6 10 10 C 1.38790 * 117.68412 * 197.45137 * 9 8 7 11 11 C 1.38574 * 120.49050 * 180.56644 * 10 9 8 12 12 O 1.35753 * 120.18938 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00162 * 185.66195 * 12 11 10 14 14 H 1.07995 * 120.00105 * 354.92492 * 13 12 11 15 15 C 1.38656 * 119.99900 * 174.91437 * 13 12 11 16 16 N 1.31553 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99971 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47075 * 60.00198 * 17 15 13 19 19 H 1.48499 * 109.47531 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47318 * 300.00587 * 17 15 13 21 21 C 1.38913 * 119.62526 * 359.97438 * 11 10 9 22 22 C 1.37791 * 119.69442 * 359.88623 * 21 11 10 23 23 C 1.37745 * 122.56194 * 17.79081 * 9 8 7 24 24 H 1.08999 * 109.47292 * 299.99924 * 1 2 3 25 25 H 1.09001 * 109.46840 * 60.00374 * 1 2 3 26 26 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 240.00076 * 2 1 3 28 28 H 1.09001 * 109.46840 * 119.99626 * 2 1 3 29 29 H 1.00896 * 111.00353 * 61.06515 * 3 2 1 30 30 H 1.09003 * 109.68148 * 308.30209 * 6 4 3 31 31 H 1.09001 * 109.67995 * 68.84635 * 6 4 3 32 32 H 1.08999 * 109.68350 * 310.18162 * 7 6 4 33 33 H 1.08996 * 109.71171 * 189.64063 * 7 6 4 34 34 H 1.08995 * 109.24609 * 188.58887 * 8 7 6 35 35 H 1.09000 * 109.21753 * 69.14280 * 8 7 6 36 36 H 1.07995 * 119.75591 * 0.58195 * 10 9 8 37 37 H 0.97005 * 119.99928 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.15018 * 179.85705 * 21 11 10 39 39 H 1.08002 * 119.67304 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4832 1.4260 -0.1201 5 1 3.8195 0.5718 -0.7077 6 6 4.1049 1.3540 1.2730 7 6 5.6106 1.6139 1.1447 8 6 5.8161 3.0820 0.7771 9 6 4.9653 3.4555 -0.4086 10 6 5.2929 4.6148 -1.0978 11 6 4.5422 5.0193 -2.1901 12 8 4.8684 6.1541 -2.8600 13 6 4.0287 6.5508 -3.8374 14 1 3.1882 5.9306 -4.1119 15 6 4.2440 7.7551 -4.4899 16 7 5.2680 8.5104 -4.1557 17 14 3.0801 8.3051 -5.8435 18 1 1.7072 8.4359 -5.2929 19 1 3.5267 9.6167 -6.3778 20 1 3.0814 7.2995 -6.9364 21 6 3.4547 4.2565 -2.5964 22 6 3.1347 3.1047 -1.9111 23 6 3.8890 2.6988 -0.8165 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7105 1.8778 0.8243 30 1 3.6551 2.1111 1.9154 31 1 3.9381 0.3646 1.6988 32 1 6.0277 0.9781 0.3638 33 1 6.1027 1.4006 2.0936 34 1 6.8654 3.2478 0.5331 35 1 5.5418 3.7065 1.6273 36 1 6.1392 5.2059 -0.7805 37 1 5.4184 9.3531 -4.6120 38 1 2.8625 4.5651 -3.4451 39 1 2.2894 2.5117 -2.2276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044745567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = -37.390224 kcal Electronic energy + Delta-G solvation = -19368.857981 eV Core-core repulsion = 16468.300469 eV Total energy + Delta-G solvation = -2900.557511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18890 -39.59250 -37.22394 -35.65586 -34.22841 -32.88410 -30.72599 -29.97544 -28.16276 -27.08320 -24.08177 -23.43782 -22.99110 -22.49166 -20.84831 -19.22132 -18.59139 -17.08475 -16.42559 -16.34498 -16.21579 -15.93659 -15.52092 -15.36646 -14.85047 -14.53182 -14.17063 -14.15093 -13.93275 -13.50341 -13.44804 -13.20522 -12.81745 -12.76517 -12.54851 -12.38926 -12.18726 -12.08635 -11.97946 -11.81085 -11.58129 -11.26527 -11.08137 -10.74295 -9.51422 -9.20208 -8.82893 -8.45965 -6.14153 0.61667 0.75522 1.34207 1.45360 1.50772 2.18601 2.81266 3.13620 3.35009 3.48987 3.88424 3.92927 4.10084 4.21719 4.25721 4.30597 4.38617 4.46797 4.53257 4.57652 4.70140 4.75589 4.80302 4.94431 4.97245 5.01406 5.08790 5.14092 5.18257 5.22566 5.29977 5.36719 5.39734 5.44035 5.69267 5.79628 5.87143 6.04950 6.21306 6.34110 6.57599 6.98700 7.80809 8.77371 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.004933 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.363551 B = 5674.399367 C = 6743.530312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.696 5.696 4 C 0.149 3.851 5 H 0.081 0.919 6 C -0.138 4.138 7 C -0.107 4.107 8 C -0.078 4.078 9 C -0.028 4.028 10 C -0.217 4.217 11 C 0.116 3.884 12 O -0.235 6.235 13 C -0.414 4.414 14 H 0.098 0.902 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.258 1.258 21 C -0.251 4.251 22 C -0.041 4.041 23 C -0.149 4.149 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.344 0.656 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.272 0.728 38 H 0.114 0.886 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -17.610 10.739 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 N -0.327 5.327 4 C 0.039 3.961 5 H 0.099 0.901 6 C -0.177 4.177 7 C -0.145 4.145 8 C -0.115 4.115 9 C -0.028 4.028 10 C -0.236 4.236 11 C 0.066 3.934 12 O -0.142 6.142 13 C -0.490 4.490 14 H 0.115 0.885 15 C -0.220 4.220 16 N -0.561 5.561 17 Si 0.837 3.163 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.270 4.270 22 C -0.059 4.059 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.721 -17.203 10.032 20.720 hybrid contribution 0.016 0.731 -0.134 0.743 sum -5.705 -16.472 9.898 20.046 Atomic orbital electron populations 1.21731 0.94556 1.02147 1.01954 1.21973 0.96047 0.88561 1.00711 1.60455 1.09702 1.15622 1.46884 1.20085 0.87218 0.93631 0.95145 0.90107 1.22198 0.96466 1.02502 0.96493 1.21464 0.96121 0.94375 1.02538 1.20524 0.98402 0.98201 0.94391 1.19571 0.95406 0.91932 0.95931 1.20370 1.03863 1.01139 0.98258 1.19824 0.94218 0.87326 0.92075 1.83929 1.47837 1.36755 1.45640 1.21758 1.08944 1.05647 1.12678 0.88457 1.26582 0.99398 0.94606 1.01433 1.70182 1.29918 1.13055 1.42914 0.84659 0.77150 0.78079 0.76373 1.18264 1.19405 1.18192 1.21231 1.01268 0.99567 1.04926 1.20971 0.97792 0.93640 0.93506 1.19464 0.97329 0.99323 0.98870 0.92630 0.93163 0.90992 0.91498 0.94121 0.83681 0.91592 0.89823 0.91629 0.89181 0.90657 0.90089 0.87519 0.91861 0.86856 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.21 71.98 0.74 -1.46 16 2 C 0.06 0.93 6.25 86.30 0.54 1.46 16 3 N -0.70 -15.01 5.31 -496.00 -2.64 -17.64 16 4 C 0.15 3.50 2.49 44.06 0.11 3.61 16 5 H 0.08 1.86 7.65 -2.39 -0.02 1.84 16 6 C -0.14 -2.52 5.30 30.61 0.16 -2.36 16 7 C -0.11 -2.02 5.98 30.62 0.18 -1.84 16 8 C -0.08 -2.02 5.67 29.74 0.17 -1.85 16 9 C -0.03 -0.98 5.74 -19.87 -0.11 -1.10 16 10 C -0.22 -9.84 9.55 22.48 0.21 -9.62 16 11 C 0.12 6.11 6.64 22.51 0.15 6.26 16 12 O -0.23 -14.80 9.76 -22.73 -0.22 -15.02 16 13 C -0.41 -25.17 9.49 67.92 0.64 -24.52 16 14 H 0.10 5.48 5.22 -2.91 -0.02 5.47 16 15 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 16 N -0.92 -58.16 13.67 21.61 0.30 -57.86 16 17 Si 1.02 44.26 29.55 68.60 2.03 46.28 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 C -0.25 -11.78 9.17 22.33 0.20 -11.57 16 22 C -0.04 -1.55 9.20 22.34 0.21 -1.35 16 23 C -0.15 -4.94 5.56 -19.81 -0.11 -5.05 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 1.16 7.92 -2.39 -0.02 1.14 16 28 H 0.04 0.56 8.02 -2.39 -0.02 0.54 16 29 H 0.34 7.03 8.34 -89.70 -0.75 6.28 16 30 H 0.07 1.25 7.91 -2.39 -0.02 1.23 16 31 H 0.08 1.17 8.02 -2.39 -0.02 1.15 16 32 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 4.83 8.05 -2.91 -0.02 4.81 16 37 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 38 H 0.11 5.44 5.66 -2.91 -0.02 5.42 16 39 H 0.13 4.54 7.60 -2.91 -0.02 4.52 16 Total: -1.00 -71.84 315.99 3.32 -68.52 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.29 Total: 26.00 kcal Atomic # 6 Polarization: -53.84 SS G_CDS: 3.56 Total: -50.28 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.34 Total: -75.50 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.22 Total: -15.02 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.84 3.32 -68.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044745567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.130 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds