Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47244 * 2 1 4 4 C 1.46898 * 111.00248 * 185.00026 * 3 2 1 5 5 H 1.09002 * 109.24268 * 320.86334 * 4 3 2 6 6 C 1.52714 * 109.25109 * 80.32212 * 4 3 2 7 7 C 1.53328 * 108.39787 * 171.38519 * 6 4 3 8 8 C 1.52738 * 108.39892 * 290.08095 * 7 6 4 9 9 C 1.50727 * 110.53299 * 51.16059 * 8 7 6 10 10 C 1.38788 * 117.67136 * 162.49675 * 9 8 7 11 11 C 1.38571 * 120.49474 * 179.42803 * 10 9 8 12 12 O 1.35749 * 120.18727 * 179.97438 * 11 10 9 13 13 C 1.34832 * 116.99779 * 185.58728 * 12 11 10 14 14 H 1.08001 * 120.00132 * 354.94196 * 13 12 11 15 15 C 1.38655 * 119.99780 * 174.94125 * 13 12 11 16 16 N 1.31552 * 120.00358 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99599 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46769 * 90.00382 * 17 15 13 19 19 H 1.48499 * 109.46817 * 209.99774 * 17 15 13 20 20 H 1.48494 * 109.47441 * 330.00479 * 17 15 13 21 21 C 1.38907 * 119.62265 * 0.02562 * 11 10 9 22 22 C 1.37794 * 119.69868 * 0.13322 * 21 11 10 23 23 C 1.37749 * 122.57504 * 342.16363 * 9 8 7 24 24 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47180 * 300.00234 * 1 2 3 26 26 H 1.08998 * 109.46979 * 59.99932 * 1 2 3 27 27 H 1.09000 * 109.46855 * 240.00192 * 2 1 3 28 28 H 1.08998 * 109.46979 * 120.00068 * 2 1 3 29 29 H 1.00907 * 111.00223 * 61.04205 * 3 2 1 30 30 H 1.08996 * 109.68048 * 51.65535 * 6 4 3 31 31 H 1.09003 * 109.71436 * 291.12770 * 6 4 3 32 32 H 1.08994 * 109.68274 * 49.81877 * 7 6 4 33 33 H 1.08999 * 109.68502 * 170.34021 * 7 6 4 34 34 H 1.09000 * 109.24714 * 171.47070 * 8 7 6 35 35 H 1.08997 * 109.25508 * 290.90311 * 8 7 6 36 36 H 1.08003 * 119.74857 * 359.40911 * 10 9 8 37 37 H 0.96997 * 120.00256 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.15215 * 180.11534 * 21 11 10 39 39 H 1.07995 * 119.67424 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4833 1.4259 -0.1195 5 1 3.9148 0.6195 0.4734 6 6 3.8743 1.2391 -1.5839 7 6 5.3792 1.4995 -1.7200 8 6 5.6312 2.9912 -1.5092 9 6 4.9790 3.4627 -0.2348 10 6 5.4056 4.6707 0.2989 11 6 4.8377 5.1653 1.4620 12 8 5.2601 6.3474 1.9788 13 6 4.7477 6.7120 3.1715 14 1 3.9750 6.1147 3.6326 15 6 5.2129 7.8537 3.8060 16 7 6.1537 8.5815 3.2442 17 14 4.5035 8.3584 5.4588 18 1 5.2935 7.7313 6.5488 19 1 4.5621 9.8362 5.5921 20 1 3.0912 7.9087 5.5495 21 6 3.8345 4.4441 2.0968 22 6 3.4161 3.2435 1.5655 23 6 3.9872 2.7474 0.3994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7103 1.8780 0.8243 30 1 3.3220 1.9449 -2.2042 31 1 3.6484 0.2199 -1.8976 32 1 5.9205 0.9258 -0.9678 33 1 5.7138 1.2076 -2.7154 34 1 6.7050 3.1695 -1.4519 35 1 5.2194 3.5478 -2.3510 36 1 6.1863 5.2294 -0.1961 37 1 6.4789 9.3804 3.6879 38 1 3.3846 4.8225 3.0028 39 1 2.6364 2.6830 2.0595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044745568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -16.982404 kcal Electronic energy + Delta-G solvation = -19369.181584 eV Core-core repulsion = 16469.509023 eV Total energy + Delta-G solvation = -2899.672562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77168 -37.97065 -35.88339 -34.51047 -32.29162 -31.71531 -29.47058 -28.39115 -27.16835 -25.22420 -22.86823 -22.51526 -21.61047 -20.92479 -19.25936 -17.54149 -16.97556 -15.86778 -15.34448 -15.22959 -14.53051 -14.37894 -14.20298 -13.80831 -13.55172 -13.51200 -12.82466 -12.78871 -12.48857 -12.36056 -11.88619 -11.83132 -11.67862 -11.47657 -11.23228 -11.15173 -11.01521 -10.74213 -10.51531 -10.44977 -10.23383 -9.97195 -9.32320 -8.83919 -8.34406 -7.99573 -7.13119 -6.44233 -4.03292 2.16211 2.29952 3.12737 3.13624 3.18393 3.96750 4.23814 4.55230 4.92144 4.95830 5.06519 5.09361 5.14548 5.26268 5.36126 5.43420 5.50214 5.59247 5.64433 5.71139 5.74970 5.82209 5.90134 6.01498 6.07550 6.08366 6.14211 6.19230 6.26501 6.45356 6.50789 6.72175 6.89236 7.01087 7.18430 7.29148 7.37098 7.45284 7.52272 7.81460 8.00549 9.01400 9.71827 10.73902 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.004830 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.731651 B = 5795.203514 C = 6801.973654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.147 3.853 5 H 0.038 0.962 6 C -0.105 4.105 7 C -0.116 4.116 8 C -0.077 4.077 9 C -0.024 4.024 10 C -0.197 4.197 11 C 0.157 3.843 12 O -0.178 6.178 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.228 4.228 22 C -0.072 4.072 23 C -0.171 4.171 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.343 0.657 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 -14.492 -6.109 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.322 5.322 4 C 0.038 3.962 5 H 0.056 0.944 6 C -0.143 4.143 7 C -0.154 4.154 8 C -0.114 4.114 9 C -0.025 4.025 10 C -0.216 4.216 11 C 0.103 3.897 12 O -0.082 6.082 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.247 4.247 22 C -0.091 4.091 23 C -0.173 4.173 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.164 0.836 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.577 -14.008 -6.794 16.537 hybrid contribution -0.187 0.033 1.903 1.913 sum -5.764 -13.975 -4.891 15.888 Atomic orbital electron populations 1.21750 0.95228 1.01214 1.02451 1.21947 0.95539 0.90159 1.00132 1.60662 1.10654 1.13891 1.46949 1.20018 0.86416 0.94184 0.95593 0.94443 1.21523 0.95575 1.00965 0.96206 1.21517 0.96340 0.96361 1.01189 1.20436 1.00084 0.95556 0.95320 1.19034 0.95159 0.93327 0.95000 1.20150 1.05262 0.97832 0.98356 1.19261 0.91790 0.86135 0.92493 1.83981 1.60461 1.29255 1.34458 1.21312 1.20864 1.10058 0.94607 0.89153 1.25275 0.96219 0.95489 0.99495 1.70034 1.26271 1.15224 1.38290 0.85723 0.79157 0.78197 0.80417 1.19908 1.20243 1.19218 1.21077 1.02395 0.97495 1.03710 1.20574 0.98048 0.95463 0.95013 1.18905 1.02006 0.97905 0.98438 0.92583 0.92908 0.91872 0.91233 0.95746 0.83561 0.90896 0.92664 0.91986 0.91830 0.91135 0.90949 0.86586 0.92039 0.85557 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.22 37.16 0.38 -1.01 16 2 C 0.05 0.56 6.19 -3.82 -0.02 0.53 16 3 N -0.69 -9.17 6.25 -108.13 -0.68 -9.84 16 4 C 0.15 2.10 2.52 -69.04 -0.17 1.93 16 5 H 0.04 0.54 7.91 -51.93 -0.41 0.13 16 6 C -0.10 -1.33 5.29 -26.71 -0.14 -1.47 16 7 C -0.12 -1.41 5.98 -26.70 -0.16 -1.57 16 8 C -0.08 -1.11 5.67 -28.00 -0.16 -1.26 16 9 C -0.02 -0.45 5.74 -104.58 -0.60 -1.05 16 10 C -0.20 -4.23 9.55 -39.26 -0.37 -4.61 16 11 C 0.16 3.84 6.64 -39.21 -0.26 3.58 16 12 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 13 C -0.39 -11.03 9.49 30.89 0.29 -10.73 16 14 H 0.09 2.35 5.22 -52.49 -0.27 2.08 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 17 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C -0.23 -4.98 9.17 -39.50 -0.36 -5.35 16 22 C -0.07 -1.34 8.91 -39.46 -0.35 -1.69 16 23 C -0.17 -3.01 5.56 -104.54 -0.58 -3.59 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.72 7.17 -51.93 -0.37 0.35 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.34 4.66 6.15 -39.29 -0.24 4.42 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.12 2.43 8.05 -52.48 -0.42 2.00 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.13 2.76 5.67 -52.49 -0.30 2.46 16 39 H 0.10 1.60 6.45 -52.49 -0.34 1.26 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -30.13 312.45 -8.52 -38.65 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.67 Total: 6.03 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.61 Total: -25.30 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.08 Total: -34.52 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.13 -8.52 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044745568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.664 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds