Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47244 * 2 1 4 4 C 1.46898 * 111.00248 * 185.00026 * 3 2 1 5 5 H 1.09002 * 109.24268 * 320.86334 * 4 3 2 6 6 C 1.52714 * 109.25109 * 80.32212 * 4 3 2 7 7 C 1.53328 * 108.39787 * 171.38519 * 6 4 3 8 8 C 1.52738 * 108.39892 * 290.08095 * 7 6 4 9 9 C 1.50727 * 110.53299 * 51.16059 * 8 7 6 10 10 C 1.38788 * 117.67136 * 162.49675 * 9 8 7 11 11 C 1.38571 * 120.49474 * 179.42803 * 10 9 8 12 12 O 1.35749 * 120.18727 * 179.97438 * 11 10 9 13 13 C 1.34832 * 116.99779 * 185.58728 * 12 11 10 14 14 H 1.08001 * 120.00132 * 354.94196 * 13 12 11 15 15 C 1.38655 * 119.99780 * 174.94125 * 13 12 11 16 16 N 1.31552 * 120.00358 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99599 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46769 * 90.00382 * 17 15 13 19 19 H 1.48499 * 109.46817 * 209.99774 * 17 15 13 20 20 H 1.48494 * 109.47441 * 330.00479 * 17 15 13 21 21 C 1.38907 * 119.62265 * 0.02562 * 11 10 9 22 22 C 1.37794 * 119.69868 * 0.13322 * 21 11 10 23 23 C 1.37749 * 122.57504 * 342.16363 * 9 8 7 24 24 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47180 * 300.00234 * 1 2 3 26 26 H 1.08998 * 109.46979 * 59.99932 * 1 2 3 27 27 H 1.09000 * 109.46855 * 240.00192 * 2 1 3 28 28 H 1.08998 * 109.46979 * 120.00068 * 2 1 3 29 29 H 1.00907 * 111.00223 * 61.04205 * 3 2 1 30 30 H 1.08996 * 109.68048 * 51.65535 * 6 4 3 31 31 H 1.09003 * 109.71436 * 291.12770 * 6 4 3 32 32 H 1.08994 * 109.68274 * 49.81877 * 7 6 4 33 33 H 1.08999 * 109.68502 * 170.34021 * 7 6 4 34 34 H 1.09000 * 109.24714 * 171.47070 * 8 7 6 35 35 H 1.08997 * 109.25508 * 290.90311 * 8 7 6 36 36 H 1.08003 * 119.74857 * 359.40911 * 10 9 8 37 37 H 0.96997 * 120.00256 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.15215 * 180.11534 * 21 11 10 39 39 H 1.07995 * 119.67424 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4833 1.4259 -0.1195 5 1 3.9148 0.6195 0.4734 6 6 3.8743 1.2391 -1.5839 7 6 5.3792 1.4995 -1.7200 8 6 5.6312 2.9912 -1.5092 9 6 4.9790 3.4627 -0.2348 10 6 5.4056 4.6707 0.2989 11 6 4.8377 5.1653 1.4620 12 8 5.2601 6.3474 1.9788 13 6 4.7477 6.7120 3.1715 14 1 3.9750 6.1147 3.6326 15 6 5.2129 7.8537 3.8060 16 7 6.1537 8.5815 3.2442 17 14 4.5035 8.3584 5.4588 18 1 5.2935 7.7313 6.5488 19 1 4.5621 9.8362 5.5921 20 1 3.0912 7.9087 5.5495 21 6 3.8345 4.4441 2.0968 22 6 3.4161 3.2435 1.5655 23 6 3.9872 2.7474 0.3994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7103 1.8780 0.8243 30 1 3.3220 1.9449 -2.2042 31 1 3.6484 0.2199 -1.8976 32 1 5.9205 0.9258 -0.9678 33 1 5.7138 1.2076 -2.7154 34 1 6.7050 3.1695 -1.4519 35 1 5.2194 3.5478 -2.3510 36 1 6.1863 5.2294 -0.1961 37 1 6.4789 9.3804 3.6879 38 1 3.3846 4.8225 3.0028 39 1 2.6364 2.6830 2.0595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044745568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -35.678261 kcal Electronic energy + Delta-G solvation = -19369.992298 eV Core-core repulsion = 16469.509023 eV Total energy + Delta-G solvation = -2900.483275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28793 -39.61904 -37.16509 -35.80913 -34.26063 -32.93901 -30.80372 -29.91505 -28.31522 -27.17577 -24.20860 -23.70134 -22.91094 -22.20486 -20.74433 -19.27173 -18.73200 -17.15948 -16.68182 -16.46753 -16.19599 -15.75557 -15.52620 -15.47782 -14.98055 -14.64626 -14.35987 -14.06238 -13.83763 -13.65663 -13.44459 -13.23950 -12.86041 -12.70768 -12.60299 -12.42905 -12.21333 -12.12688 -11.89373 -11.74215 -11.57892 -11.21455 -11.05448 -10.78891 -9.60121 -9.43948 -8.81794 -8.47955 -6.16498 0.52378 0.65745 1.33912 1.43255 1.51592 2.16761 2.75695 3.09554 3.32064 3.43689 3.77039 3.90624 4.02944 4.15609 4.27152 4.33028 4.37221 4.43687 4.44388 4.53836 4.63488 4.69906 4.79179 4.92880 5.01223 5.02955 5.06146 5.11937 5.15722 5.19710 5.28147 5.28774 5.37884 5.50935 5.59684 5.69329 5.81818 6.01357 6.14768 6.23871 6.46185 6.96517 7.77302 8.75397 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.004830 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.731651 B = 5795.203514 C = 6801.973654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.696 5.696 4 C 0.147 3.853 5 H 0.048 0.952 6 C -0.101 4.101 7 C -0.110 4.110 8 C -0.079 4.079 9 C -0.023 4.023 10 C -0.211 4.211 11 C 0.116 3.884 12 O -0.232 6.232 13 C -0.415 4.415 14 H 0.101 0.899 15 C -0.022 4.022 16 N -0.921 5.921 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.253 1.253 21 C -0.240 4.240 22 C -0.069 4.069 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.340 0.660 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.273 0.727 38 H 0.120 0.880 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -17.689 -6.695 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.330 5.330 4 C 0.038 3.962 5 H 0.066 0.934 6 C -0.139 4.139 7 C -0.148 4.148 8 C -0.116 4.116 9 C -0.024 4.024 10 C -0.230 4.230 11 C 0.066 3.934 12 O -0.139 6.139 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.259 4.259 22 C -0.087 4.087 23 C -0.156 4.156 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.090 -17.267 -7.414 20.085 hybrid contribution 0.214 0.736 1.873 2.024 sum -6.876 -16.531 -5.541 18.742 Atomic orbital electron populations 1.21729 0.94273 1.02309 1.02016 1.22039 0.96316 0.88590 1.00823 1.60710 1.09691 1.15707 1.46871 1.20091 0.87258 0.91837 0.96970 0.93414 1.21523 0.95685 1.02247 0.94488 1.21527 0.96085 0.94095 1.03075 1.20561 1.00185 0.97674 0.93183 1.19550 0.94845 0.91766 0.96215 1.20421 1.05449 0.99263 0.97861 1.19805 0.93485 0.86155 0.93965 1.83943 1.62661 1.31809 1.35481 1.21818 1.21455 1.10781 0.95058 0.88212 1.26592 0.96504 0.95088 1.03795 1.70182 1.28717 1.16309 1.40717 0.84587 0.78937 0.77952 0.74722 1.18788 1.19491 1.17666 1.21160 1.02210 0.98735 1.03765 1.20931 0.98326 0.94221 0.95239 1.19486 1.00147 0.98823 0.97157 0.90757 0.93157 0.92509 0.90306 0.95169 0.83979 0.91851 0.90132 0.91705 0.88860 0.90412 0.89972 0.87179 0.91817 0.86245 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.22 71.98 0.74 -1.52 16 2 C 0.05 0.91 6.19 86.31 0.53 1.44 16 3 N -0.70 -16.20 6.25 -496.02 -3.10 -19.30 16 4 C 0.15 3.70 2.52 44.06 0.11 3.81 16 5 H 0.05 1.16 7.91 -2.39 -0.02 1.14 16 6 C -0.10 -2.14 5.29 30.61 0.16 -1.98 16 7 C -0.11 -2.21 5.98 30.62 0.18 -2.03 16 8 C -0.08 -2.09 5.67 29.77 0.17 -1.92 16 9 C -0.02 -0.82 5.74 -19.84 -0.11 -0.94 16 10 C -0.21 -9.40 9.55 22.48 0.21 -9.19 16 11 C 0.12 5.99 6.64 22.51 0.15 6.14 16 12 O -0.23 -14.34 9.76 -22.75 -0.22 -14.57 16 13 C -0.42 -24.65 9.49 67.92 0.64 -24.01 16 14 H 0.10 5.44 5.22 -2.91 -0.02 5.43 16 15 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 16 N -0.92 -57.29 13.67 21.61 0.30 -56.99 16 17 Si 1.02 43.36 29.55 68.60 2.03 45.39 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.24 -10.77 9.17 22.32 0.20 -10.57 16 22 C -0.07 -2.47 8.91 22.35 0.20 -2.27 16 23 C -0.16 -5.14 5.56 -19.81 -0.11 -5.25 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.27 7.17 -2.39 -0.02 1.26 16 28 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.34 8.20 6.15 -89.69 -0.55 7.65 16 30 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.08 1.36 7.36 -2.39 -0.02 1.34 16 32 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 4.89 8.05 -2.91 -0.02 4.87 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.12 5.42 5.67 -2.91 -0.02 5.40 16 39 H 0.14 3.90 6.45 -2.91 -0.02 3.88 16 Total: -1.00 -70.24 312.45 3.04 -67.20 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.50 Total: 27.38 kcal Atomic # 6 Polarization: -52.66 SS G_CDS: 3.55 Total: -49.11 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.81 Total: -76.30 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.24 3.04 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044745568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds