Wall clock time and date at job start Mon Mar 30 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99958 * 2 1 4 4 C 1.50701 * 109.47224 * 293.95307 * 3 2 1 5 5 H 1.08002 * 119.99905 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99837 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00378 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99659 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46677 * 90.00145 * 8 6 4 10 10 H 1.48497 * 109.47114 * 209.99881 * 8 6 4 11 11 H 1.48500 * 109.47372 * 330.00332 * 8 6 4 12 12 C 1.46898 * 110.99953 * 123.95473 * 2 1 3 13 13 C 1.52993 * 109.47278 * 66.04469 * 12 2 1 14 14 C 1.53002 * 109.47281 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47361 * 180.02562 * 14 13 12 16 16 O 1.21250 * 119.99733 * 0.02562 * 15 14 13 17 17 C 1.47164 * 119.99851 * 180.02562 * 15 14 13 18 18 C 1.39855 * 120.16680 * 180.02562 * 17 15 14 19 19 C 1.37890 * 119.82316 * 179.97438 * 18 17 15 20 20 C 1.38404 * 120.17220 * 359.97438 * 19 18 17 21 21 C 1.38409 * 120.34828 * 0.04376 * 20 19 18 22 22 C 1.37888 * 120.17293 * 359.95823 * 21 20 19 23 23 H 1.08995 * 109.47188 * 296.04516 * 1 2 3 24 24 H 1.08999 * 109.46924 * 56.04734 * 1 2 3 25 25 H 1.09000 * 109.46923 * 176.04593 * 1 2 3 26 26 H 1.09003 * 109.46904 * 53.95405 * 3 2 1 27 27 H 1.08996 * 109.46862 * 173.94933 * 3 2 1 28 28 H 0.97002 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46880 * 306.04639 * 12 2 1 30 30 H 1.08998 * 109.47104 * 186.05315 * 12 2 1 31 31 H 1.09001 * 109.47026 * 60.00260 * 13 12 2 32 32 H 1.08995 * 109.47248 * 300.00463 * 13 12 2 33 33 H 1.09001 * 109.46706 * 60.00274 * 14 13 12 34 34 H 1.08995 * 109.47529 * 300.00501 * 14 13 12 35 35 H 1.07999 * 120.09085 * 359.69867 * 18 17 15 36 36 H 1.08000 * 119.91186 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.82754 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.91489 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.08508 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7110 4.0023 -0.6145 8 14 1.5830 4.1868 -3.1383 9 1 0.2703 4.8667 -2.9971 10 1 2.6251 5.1884 -3.4790 11 1 1.5007 3.1710 -4.2184 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 6 2.1803 -3.0405 2.1549 15 6 1.8223 -4.4950 1.9898 16 8 1.1909 -4.8577 1.0203 17 6 2.2390 -5.4751 3.0055 18 6 1.9091 -6.8259 2.8556 19 6 2.3037 -7.7383 3.8113 20 6 3.0247 -7.3204 4.9163 21 6 3.3546 -5.9852 5.0719 22 6 2.9674 -5.0607 4.1251 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9856 4.9184 -0.7765 29 1 1.5610 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1757 31 1 2.0658 -2.6213 0.0452 32 1 0.5472 -2.3474 0.9322 33 1 1.7462 -2.6618 3.0803 34 1 3.2645 -2.9355 2.1925 35 1 1.3431 -7.1530 1.9959 36 1 2.0501 -8.7818 3.6968 37 1 3.3312 -8.0398 5.6612 38 1 3.9171 -5.6668 5.9371 39 1 3.2253 -4.0192 4.2481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049750625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:27 Heat of formation + Delta-G solvation = -18.700765 kcal Electronic energy + Delta-G solvation = -18314.438235 eV Core-core repulsion = 15414.691159 eV Total energy + Delta-G solvation = -2899.747076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21810 -38.41002 -36.81096 -33.45554 -32.31923 -31.45961 -31.23867 -27.71938 -26.76044 -24.98727 -23.57875 -22.71423 -21.35530 -19.95475 -19.68814 -17.50404 -16.32459 -15.92972 -15.75725 -15.73361 -14.83022 -14.60687 -14.46892 -14.24150 -13.83431 -13.69949 -13.25630 -13.12762 -12.70529 -12.01733 -11.90365 -11.78466 -11.62446 -11.41453 -11.24306 -10.95665 -10.81919 -10.61962 -10.44054 -10.20900 -9.86499 -9.64484 -9.33613 -9.27906 -9.14314 -8.41030 -7.17983 -5.99906 -4.00800 0.41862 1.03729 2.26788 3.34107 3.39997 3.45237 3.52086 3.83188 4.45571 4.48549 4.59660 4.70778 4.90416 4.96473 5.07079 5.16339 5.18166 5.34751 5.41735 5.50013 5.64531 5.75423 5.77534 5.91823 5.99641 6.09017 6.11840 6.13683 6.26613 6.37043 6.54107 6.55110 6.64821 6.83700 7.33409 7.38194 7.45278 7.84467 8.13213 8.25392 8.60428 9.07213 9.63308 11.11117 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.052138 B = 0.002885 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.912512 B = 9703.431763 C =10050.120713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.542 5.542 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.056 3.944 13 C -0.106 4.106 14 C -0.165 4.165 15 C 0.394 3.606 16 O -0.447 6.447 17 C -0.167 4.167 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.073 4.073 23 H 0.009 0.991 24 H 0.073 0.927 25 H 0.047 0.953 26 H -0.010 1.010 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -20.984 12.963 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.203 4.203 15 C 0.272 3.728 16 O -0.322 6.322 17 C -0.168 4.168 18 C -0.083 4.083 19 C -0.153 4.153 20 C -0.111 4.111 21 C -0.152 4.152 22 C -0.091 4.091 23 H 0.027 0.973 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.008 0.992 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.677 -21.208 12.035 24.395 hybrid contribution -0.339 0.968 0.140 1.036 sum 0.338 -20.240 12.175 23.622 Atomic orbital electron populations 1.22249 0.89032 0.99639 1.00358 1.62072 1.06944 1.17719 1.39902 1.19737 0.95332 0.81676 0.96572 1.21189 1.34612 0.96879 1.01755 0.91840 1.24994 0.95341 0.97359 0.97017 1.69958 1.38559 1.11393 1.34118 0.86498 0.77957 0.79206 0.83774 1.20761 1.21265 1.19746 1.22039 0.99933 0.92690 0.92609 1.21433 1.01435 0.94505 0.97050 1.22042 1.03579 0.92708 1.01922 1.22619 0.75942 0.90790 0.83495 1.90526 1.30400 1.82259 1.29023 1.20688 1.03131 0.95113 0.97818 1.21483 0.96319 0.92050 0.98440 1.21170 0.99516 0.99890 0.94691 1.21431 0.96321 0.96134 0.97258 1.21181 1.01070 0.93307 0.99655 1.21546 0.94760 1.00336 0.92439 0.97265 0.90841 0.93392 0.99225 0.95271 0.92973 0.96141 0.91483 0.90707 0.91592 0.88509 0.88212 0.84928 0.85492 0.85680 0.85352 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.54 -12.19 4.75 -244.38 -1.16 -13.35 16 3 C 0.19 5.14 4.72 -4.97 -0.02 5.11 16 4 C -0.51 -14.56 8.46 -34.44 -0.29 -14.85 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.06 1.01 4.96 -3.83 -0.02 0.99 16 13 C -0.11 -1.63 4.43 -26.73 -0.12 -1.75 16 14 C -0.16 -1.88 4.31 -27.88 -0.12 -2.00 16 15 C 0.39 4.91 7.12 -30.69 -0.22 4.69 16 16 O -0.45 -7.04 15.98 5.58 0.09 -6.95 16 17 C -0.17 -1.74 5.87 -105.07 -0.62 -2.36 16 18 C -0.06 -0.64 9.60 -39.10 -0.38 -1.01 16 19 C -0.13 -1.04 10.03 -39.65 -0.40 -1.44 16 20 C -0.09 -0.64 10.04 -39.46 -0.40 -1.04 16 21 C -0.13 -0.96 10.03 -39.65 -0.40 -1.35 16 22 C -0.07 -0.61 9.47 -39.11 -0.37 -0.98 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 25 H 0.05 0.86 6.47 -51.93 -0.34 0.53 16 26 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 27 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 31 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.07 1.05 6.51 -51.93 -0.34 0.72 16 33 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.13 1.32 7.65 -52.49 -0.40 0.91 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.88 7.05 -52.49 -0.37 0.51 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -32.79 327.07 -9.25 -42.03 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.92 Total: -4.00 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.89 Total: -13.25 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.43 Total: -39.74 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.79 -9.25 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049750625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds