Wall clock time and date at job start Mon Mar 30 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99958 * 2 1 4 4 C 1.50701 * 109.47224 * 293.95307 * 3 2 1 5 5 H 1.08002 * 119.99905 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99837 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00378 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99659 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46677 * 90.00145 * 8 6 4 10 10 H 1.48497 * 109.47114 * 209.99881 * 8 6 4 11 11 H 1.48500 * 109.47372 * 330.00332 * 8 6 4 12 12 C 1.46898 * 110.99953 * 123.95473 * 2 1 3 13 13 C 1.52993 * 109.47278 * 66.04469 * 12 2 1 14 14 C 1.53002 * 109.47281 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47361 * 180.02562 * 14 13 12 16 16 O 1.21250 * 119.99733 * 0.02562 * 15 14 13 17 17 C 1.47164 * 119.99851 * 180.02562 * 15 14 13 18 18 C 1.39855 * 120.16680 * 180.02562 * 17 15 14 19 19 C 1.37890 * 119.82316 * 179.97438 * 18 17 15 20 20 C 1.38404 * 120.17220 * 359.97438 * 19 18 17 21 21 C 1.38409 * 120.34828 * 0.04376 * 20 19 18 22 22 C 1.37888 * 120.17293 * 359.95823 * 21 20 19 23 23 H 1.08995 * 109.47188 * 296.04516 * 1 2 3 24 24 H 1.08999 * 109.46924 * 56.04734 * 1 2 3 25 25 H 1.09000 * 109.46923 * 176.04593 * 1 2 3 26 26 H 1.09003 * 109.46904 * 53.95405 * 3 2 1 27 27 H 1.08996 * 109.46862 * 173.94933 * 3 2 1 28 28 H 0.97002 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46880 * 306.04639 * 12 2 1 30 30 H 1.08998 * 109.47104 * 186.05315 * 12 2 1 31 31 H 1.09001 * 109.47026 * 60.00260 * 13 12 2 32 32 H 1.08995 * 109.47248 * 300.00463 * 13 12 2 33 33 H 1.09001 * 109.46706 * 60.00274 * 14 13 12 34 34 H 1.08995 * 109.47529 * 300.00501 * 14 13 12 35 35 H 1.07999 * 120.09085 * 359.69867 * 18 17 15 36 36 H 1.08000 * 119.91186 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.82754 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.91489 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.08508 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7110 4.0023 -0.6145 8 14 1.5830 4.1868 -3.1383 9 1 0.2703 4.8667 -2.9971 10 1 2.6251 5.1884 -3.4790 11 1 1.5007 3.1710 -4.2184 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 6 2.1803 -3.0405 2.1549 15 6 1.8223 -4.4950 1.9898 16 8 1.1909 -4.8577 1.0203 17 6 2.2390 -5.4751 3.0055 18 6 1.9091 -6.8259 2.8556 19 6 2.3037 -7.7383 3.8113 20 6 3.0247 -7.3204 4.9163 21 6 3.3546 -5.9852 5.0719 22 6 2.9674 -5.0607 4.1251 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9856 4.9184 -0.7765 29 1 1.5610 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1757 31 1 2.0658 -2.6213 0.0452 32 1 0.5472 -2.3474 0.9322 33 1 1.7462 -2.6618 3.0803 34 1 3.2645 -2.9355 2.1925 35 1 1.3431 -7.1530 1.9959 36 1 2.0501 -8.7818 3.6968 37 1 3.3312 -8.0398 5.6612 38 1 3.9171 -5.6668 5.9371 39 1 3.2253 -4.0192 4.2481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049750625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:27 Heat of formation + Delta-G solvation = -38.576054 kcal Electronic energy + Delta-G solvation = -18315.300092 eV Core-core repulsion = 15414.691159 eV Total energy + Delta-G solvation = -2900.608933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06876 -39.21363 -38.47307 -35.12704 -33.97628 -32.31910 -31.86125 -29.47755 -28.33389 -26.56160 -24.68445 -23.51556 -22.75569 -21.54523 -20.56956 -18.55016 -18.17634 -16.97708 -16.83717 -16.67316 -16.50193 -15.87840 -15.72278 -15.35547 -14.93436 -14.75067 -14.59974 -14.38060 -13.89200 -13.51910 -13.26274 -13.08095 -12.89491 -12.68063 -12.58503 -12.51276 -12.34009 -12.21462 -11.96211 -11.94820 -11.46995 -11.28263 -10.67052 -10.61938 -9.93419 -9.92479 -9.00713 -8.21025 -6.30977 -0.30037 0.44410 1.40589 1.42074 1.45829 1.54030 2.40168 2.87960 2.91689 3.11232 3.41988 3.85013 4.02554 4.03184 4.10045 4.19378 4.24463 4.44232 4.50185 4.52050 4.57120 4.66654 4.72046 4.76840 4.81042 4.95552 5.06204 5.09516 5.15031 5.20614 5.29877 5.36899 5.40882 5.49695 5.52263 5.65460 5.97865 6.05601 6.33191 6.53823 6.66263 6.85056 7.38672 8.90082 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.052138 B = 0.002885 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.912512 B = 9703.431763 C =10050.120713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.557 5.557 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.057 3.943 13 C -0.095 4.095 14 C -0.158 4.158 15 C 0.398 3.602 16 O -0.494 6.494 17 C -0.191 4.191 18 C -0.085 4.085 19 C -0.139 4.139 20 C -0.088 4.088 21 C -0.136 4.136 22 C -0.073 4.073 23 H 0.013 0.987 24 H 0.055 0.945 25 H 0.073 0.927 26 H -0.036 1.036 27 H 0.006 0.994 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -21.900 14.265 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.281 5.281 3 C 0.080 3.920 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.192 1.192 12 C -0.071 4.071 13 C -0.133 4.133 14 C -0.195 4.195 15 C 0.278 3.722 16 O -0.372 6.372 17 C -0.192 4.192 18 C -0.103 4.103 19 C -0.157 4.157 20 C -0.106 4.106 21 C -0.154 4.154 22 C -0.091 4.091 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.092 0.908 26 H -0.018 1.018 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.093 -22.144 13.360 25.885 hybrid contribution -0.432 1.169 -0.158 1.256 sum 0.661 -20.975 13.202 24.793 Atomic orbital electron populations 1.22215 0.87859 1.00978 0.99734 1.61992 1.08156 1.15427 1.42537 1.19400 0.93787 0.83768 0.94997 1.21487 1.34913 0.97589 1.02478 0.92178 1.25909 0.94982 0.97991 1.00762 1.70073 1.39317 1.11885 1.36159 0.85381 0.78049 0.78070 0.79111 1.19720 1.20490 1.19154 1.22122 0.99915 0.93627 0.91445 1.21255 1.00932 0.92935 0.98131 1.22028 1.04903 0.91593 1.01015 1.22938 0.74601 0.91516 0.83116 1.90512 1.32864 1.82927 1.30944 1.20604 1.05200 0.94870 0.98506 1.21562 0.97137 0.92613 0.98999 1.21438 0.99315 1.00529 0.94444 1.21853 0.94777 0.96836 0.97093 1.21575 1.00595 0.93204 1.00017 1.21802 0.93917 1.01699 0.91721 0.96876 0.92619 0.90804 1.01811 0.97542 0.92605 0.95082 0.91376 0.92664 0.92390 0.85944 0.86017 0.86279 0.83569 0.82730 0.82608 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.14 127.69 1.17 2.83 16 2 N -0.56 -25.34 4.75 -927.07 -4.41 -29.75 16 3 C 0.21 11.37 4.72 85.56 0.40 11.77 16 4 C -0.53 -30.81 8.46 25.60 0.22 -30.60 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.09 5.46 84.65 0.46 0.55 16 7 N -0.93 -56.88 13.29 21.44 0.28 -56.59 16 8 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.06 2.03 4.96 86.30 0.43 2.46 16 13 C -0.09 -2.86 4.43 30.59 0.14 -2.72 16 14 C -0.16 -3.37 4.31 29.85 0.13 -3.24 16 15 C 0.40 9.82 7.12 28.03 0.20 10.02 16 16 O -0.49 -16.11 15.98 -2.94 -0.05 -16.16 16 17 C -0.19 -3.85 5.87 -20.15 -0.12 -3.96 16 18 C -0.08 -1.66 9.60 22.58 0.22 -1.44 16 19 C -0.14 -1.92 10.03 22.23 0.22 -1.69 16 20 C -0.09 -0.92 10.04 22.35 0.22 -0.70 16 21 C -0.14 -1.48 10.03 22.23 0.22 -1.25 16 22 C -0.07 -1.04 9.47 22.58 0.21 -0.83 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.05 2.45 6.76 -2.39 -0.02 2.44 16 25 H 0.07 2.63 6.47 -2.39 -0.02 2.61 16 26 H -0.04 -2.11 8.12 -2.39 -0.02 -2.13 16 27 H 0.01 0.38 7.93 -2.39 -0.02 0.36 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 31 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.06 1.83 6.51 -2.39 -0.02 1.82 16 33 H 0.12 2.02 8.09 -2.39 -0.02 2.01 16 34 H 0.12 2.10 8.09 -2.39 -0.02 2.08 16 35 H 0.12 2.53 7.65 -2.91 -0.02 2.51 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 1.50 7.05 -2.91 -0.02 1.48 16 Total: -1.00 -72.40 327.07 3.00 -69.40 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.02 Total: 4.71 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.12 Total: -18.81 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.12 Total: -86.34 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.05 Total: -16.16 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.40 3.00 -69.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049750625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.825 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds