Wall clock time and date at job start Mon Mar 30 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47447 * 2 1 4 4 C 1.46496 * 120.00494 * 277.65287 * 3 2 1 5 5 C 1.50701 * 109.46919 * 269.99943 * 4 3 2 6 6 C 1.38234 * 119.99817 * 269.72245 * 5 4 3 7 7 C 1.38239 * 119.99729 * 179.77092 * 6 5 4 8 8 C 1.38227 * 120.00261 * 0.47966 * 7 6 5 9 9 C 1.38243 * 119.99786 * 359.79680 * 8 7 6 10 10 C 1.38234 * 120.00067 * 359.95448 * 9 8 7 11 11 C 1.34778 * 119.99618 * 97.64786 * 3 2 1 12 12 O 1.21287 * 119.99744 * 184.40791 * 11 3 2 13 13 C 1.50696 * 120.00229 * 4.41383 * 11 3 2 14 14 H 1.09005 * 109.47251 * 34.02299 * 13 11 3 15 15 C 1.52998 * 109.46947 * 274.02814 * 13 11 3 16 16 C 1.50705 * 109.47474 * 154.02750 * 13 11 3 17 17 H 1.07996 * 119.99528 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99908 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00294 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99827 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47127 * 270.00467 * 20 18 16 22 22 H 1.48496 * 109.46785 * 30.00367 * 20 18 16 23 23 H 1.48494 * 109.47066 * 150.00106 * 20 18 16 24 24 H 1.09000 * 109.46736 * 309.82227 * 1 2 3 25 25 H 1.09001 * 109.46997 * 69.81549 * 1 2 3 26 26 H 1.08995 * 109.47169 * 189.81680 * 1 2 3 27 27 H 1.09003 * 109.47459 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.47180 * 120.00699 * 2 1 3 29 29 H 1.09004 * 109.47231 * 29.99345 * 4 3 2 30 30 H 1.08994 * 109.47623 * 149.99734 * 4 3 2 31 31 H 1.08003 * 120.00141 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.99653 * 180.25070 * 7 6 5 33 33 H 1.07999 * 120.00437 * 179.77102 * 8 7 6 34 34 H 1.07996 * 119.99984 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.00078 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.47338 * 190.76338 * 15 13 11 37 37 H 1.08997 * 109.47479 * 310.76743 * 15 13 11 38 38 H 1.09007 * 109.47188 * 70.76731 * 15 13 11 39 39 H 0.97000 * 120.00156 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1034 2.1282 -1.2573 5 6 3.4601 1.9149 -1.8776 6 6 4.5016 2.7713 -1.5732 7 6 5.7474 2.5728 -2.1386 8 6 5.9491 1.5238 -3.0159 9 6 4.9060 0.6708 -3.3248 10 6 3.6616 0.8662 -2.7555 11 6 2.3895 1.9647 1.1569 12 8 2.7177 3.1322 1.1692 13 6 2.3968 1.1664 2.4350 14 1 2.6758 0.1353 2.2179 15 6 1.0017 1.1958 3.0625 16 6 3.3923 1.7647 3.3954 17 1 3.9623 2.6360 3.1089 18 6 3.5744 1.2002 4.6400 19 7 2.8798 0.1393 4.9890 20 14 4.8089 1.9413 5.8301 21 1 6.1367 1.3094 5.6232 22 1 4.9132 3.4028 5.5886 23 1 4.3581 1.7009 7.2244 24 1 -0.3633 0.6581 0.7893 25 1 -0.3633 0.3546 -0.9646 26 1 -0.3633 -1.0126 0.1752 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3315 1.7763 -1.9419 30 1 1.9571 3.1901 -1.0598 31 1 4.3429 3.5935 -0.8912 32 1 6.5622 3.2395 -1.8976 33 1 6.9214 1.3709 -3.4605 34 1 5.0635 -0.1485 -4.0106 35 1 2.8468 0.1995 -2.9964 36 1 1.0485 0.7865 4.0718 37 1 0.6434 2.2244 3.1038 38 1 0.3191 0.5973 2.4591 39 1 3.0083 -0.2581 5.8645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:33 Heat of formation + Delta-G solvation = -16.570667 kcal Electronic energy + Delta-G solvation = -19926.678070 eV Core-core repulsion = 17027.023363 eV Total energy + Delta-G solvation = -2899.654708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63661 -38.44672 -35.32433 -33.86706 -32.12096 -30.70847 -30.20073 -29.61689 -26.08136 -25.16488 -23.03648 -22.37071 -22.19156 -20.86772 -18.18445 -16.63941 -16.43277 -16.10429 -15.41066 -15.18995 -14.73925 -14.51528 -13.93767 -13.60959 -13.22928 -13.11106 -12.75935 -12.58967 -12.36589 -12.16138 -11.83411 -11.40753 -11.32525 -11.07574 -10.97251 -10.88791 -10.75557 -10.65719 -10.42061 -10.19409 -9.98240 -8.94224 -8.81269 -8.73029 -8.45566 -8.19746 -8.05789 -6.01797 -4.05364 1.48568 1.59361 3.33676 3.39443 3.46058 3.64505 3.74779 4.13998 4.47983 4.96291 5.02228 5.15007 5.25460 5.28678 5.32103 5.39718 5.61196 5.65575 5.68881 5.82496 5.92292 5.98389 6.12218 6.18088 6.23128 6.30176 6.41177 6.60479 6.69524 6.74241 6.85124 6.92972 7.03130 7.16172 7.19797 7.45333 7.80858 7.99665 8.15013 8.41327 9.00387 9.25752 9.59332 11.05009 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.006551 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.398278 B = 4273.404841 C = 5184.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.621 5.621 4 C 0.152 3.848 5 C -0.097 4.097 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.110 4.110 11 C 0.525 3.475 12 O -0.546 6.546 13 C 0.032 3.968 14 H 0.047 0.953 15 C -0.135 4.135 16 C -0.497 4.497 17 H 0.068 0.932 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.273 1.273 23 H -0.286 1.286 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -1.699 -14.790 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.356 5.356 4 C 0.029 3.971 5 C -0.098 4.098 6 C -0.112 4.112 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.129 4.129 11 C 0.317 3.683 12 O -0.422 6.422 13 C 0.011 3.989 14 H 0.065 0.935 15 C -0.193 4.193 16 C -0.535 4.535 17 H 0.086 0.914 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.197 1.197 23 H -0.212 1.212 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.036 -1.175 -14.597 14.681 hybrid contribution 0.697 0.159 0.598 0.931 sum -0.340 -1.016 -13.999 14.040 Atomic orbital electron populations 1.22291 0.96509 1.02204 1.01918 1.21557 0.93898 0.83128 1.03325 1.48283 1.66916 1.14094 1.06290 1.20191 0.92388 0.98622 0.85905 1.20375 0.97019 0.95598 0.96835 1.21273 0.92466 0.99442 0.98001 1.21168 0.97204 0.98245 0.97485 1.21098 0.98709 0.95705 0.98716 1.21052 0.93349 0.99542 1.00652 1.21004 0.97225 0.97295 0.97377 1.22009 0.73284 0.87953 0.85056 1.90502 1.47691 1.17685 1.86331 1.18885 0.96183 0.95647 0.88157 0.93507 1.21802 0.94657 0.98771 1.04082 1.21096 1.20500 1.13396 0.98550 0.91384 1.24923 0.96277 0.94996 0.97990 1.69866 1.40876 1.21531 1.21185 0.86489 0.81230 0.79823 0.79931 1.20713 1.19739 1.21211 0.91451 0.93300 0.91921 0.91865 0.88739 0.90720 0.89502 0.85382 0.86302 0.86539 0.86479 0.86474 0.88654 0.95433 0.96021 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.76 37.16 0.36 -1.88 16 2 C 0.10 1.59 5.87 -4.04 -0.02 1.56 16 3 N -0.62 -11.27 2.46 -175.06 -0.43 -11.70 16 4 C 0.15 2.37 5.58 -5.20 -0.03 2.34 16 5 C -0.10 -1.50 5.46 -104.62 -0.57 -2.07 16 6 C -0.09 -1.53 9.70 -39.58 -0.38 -1.91 16 7 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 8 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 9 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 10 C -0.11 -1.46 9.70 -39.58 -0.38 -1.85 16 11 C 0.53 12.13 6.73 -10.99 -0.07 12.05 16 12 O -0.55 -14.11 15.16 5.55 0.08 -14.03 16 13 C 0.03 0.81 1.86 -92.92 -0.17 0.63 16 14 H 0.05 1.20 6.14 -51.93 -0.32 0.88 16 15 C -0.14 -3.19 9.05 37.16 0.34 -2.86 16 16 C -0.50 -14.20 8.33 -34.44 -0.29 -14.49 16 17 H 0.07 2.05 7.05 -52.49 -0.37 1.68 16 18 C 0.06 1.64 5.26 -17.82 -0.09 1.54 16 19 N -0.89 -25.15 11.30 55.43 0.63 -24.52 16 20 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.07 1.02 6.22 -51.93 -0.32 0.69 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.09 1.62 5.55 -51.93 -0.29 1.34 16 29 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 30 H 0.09 1.47 7.31 -51.93 -0.38 1.09 16 31 H 0.13 2.30 7.82 -52.48 -0.41 1.89 16 32 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.09 2.48 5.86 -51.93 -0.30 2.18 16 37 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.02 0.43 5.37 -51.93 -0.28 0.15 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -31.14 319.60 -8.04 -39.18 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.60 Total: 2.38 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.51 Total: -13.04 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.20 Total: -36.22 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.14 -8.04 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.612 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds