Wall clock time and date at job start Mon Mar 30 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47447 * 2 1 4 4 C 1.46496 * 120.00494 * 277.65287 * 3 2 1 5 5 C 1.50701 * 109.46919 * 269.99943 * 4 3 2 6 6 C 1.38234 * 119.99817 * 269.72245 * 5 4 3 7 7 C 1.38239 * 119.99729 * 179.77092 * 6 5 4 8 8 C 1.38227 * 120.00261 * 0.47966 * 7 6 5 9 9 C 1.38243 * 119.99786 * 359.79680 * 8 7 6 10 10 C 1.38234 * 120.00067 * 359.95448 * 9 8 7 11 11 C 1.34778 * 119.99618 * 97.64786 * 3 2 1 12 12 O 1.21287 * 119.99744 * 184.40791 * 11 3 2 13 13 C 1.50696 * 120.00229 * 4.41383 * 11 3 2 14 14 H 1.09005 * 109.47251 * 34.02299 * 13 11 3 15 15 C 1.52998 * 109.46947 * 274.02814 * 13 11 3 16 16 C 1.50705 * 109.47474 * 154.02750 * 13 11 3 17 17 H 1.07996 * 119.99528 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99908 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00294 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99827 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47127 * 270.00467 * 20 18 16 22 22 H 1.48496 * 109.46785 * 30.00367 * 20 18 16 23 23 H 1.48494 * 109.47066 * 150.00106 * 20 18 16 24 24 H 1.09000 * 109.46736 * 309.82227 * 1 2 3 25 25 H 1.09001 * 109.46997 * 69.81549 * 1 2 3 26 26 H 1.08995 * 109.47169 * 189.81680 * 1 2 3 27 27 H 1.09003 * 109.47459 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.47180 * 120.00699 * 2 1 3 29 29 H 1.09004 * 109.47231 * 29.99345 * 4 3 2 30 30 H 1.08994 * 109.47623 * 149.99734 * 4 3 2 31 31 H 1.08003 * 120.00141 * 359.97438 * 6 5 4 32 32 H 1.08006 * 119.99653 * 180.25070 * 7 6 5 33 33 H 1.07999 * 120.00437 * 179.77102 * 8 7 6 34 34 H 1.07996 * 119.99984 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.00078 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.47338 * 190.76338 * 15 13 11 37 37 H 1.08997 * 109.47479 * 310.76743 * 15 13 11 38 38 H 1.09007 * 109.47188 * 70.76731 * 15 13 11 39 39 H 0.97000 * 120.00156 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1034 2.1282 -1.2573 5 6 3.4601 1.9149 -1.8776 6 6 4.5016 2.7713 -1.5732 7 6 5.7474 2.5728 -2.1386 8 6 5.9491 1.5238 -3.0159 9 6 4.9060 0.6708 -3.3248 10 6 3.6616 0.8662 -2.7555 11 6 2.3895 1.9647 1.1569 12 8 2.7177 3.1322 1.1692 13 6 2.3968 1.1664 2.4350 14 1 2.6758 0.1353 2.2179 15 6 1.0017 1.1958 3.0625 16 6 3.3923 1.7647 3.3954 17 1 3.9623 2.6360 3.1089 18 6 3.5744 1.2002 4.6400 19 7 2.8798 0.1393 4.9890 20 14 4.8089 1.9413 5.8301 21 1 6.1367 1.3094 5.6232 22 1 4.9132 3.4028 5.5886 23 1 4.3581 1.7009 7.2244 24 1 -0.3633 0.6581 0.7893 25 1 -0.3633 0.3546 -0.9646 26 1 -0.3633 -1.0126 0.1752 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3315 1.7763 -1.9419 30 1 1.9571 3.1901 -1.0598 31 1 4.3429 3.5935 -0.8912 32 1 6.5622 3.2395 -1.8976 33 1 6.9214 1.3709 -3.4605 34 1 5.0635 -0.1485 -4.0106 35 1 2.8468 0.1995 -2.9964 36 1 1.0485 0.7865 4.0718 37 1 0.6434 2.2244 3.1038 38 1 0.3191 0.5973 2.4591 39 1 3.0083 -0.2581 5.8645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:32 Heat of formation + Delta-G solvation = -33.614664 kcal Electronic energy + Delta-G solvation = -19927.417154 eV Core-core repulsion = 17027.023363 eV Total energy + Delta-G solvation = -2900.393791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09942 -39.75088 -36.86221 -35.87317 -33.46423 -32.08272 -31.76499 -30.86546 -27.40739 -27.27944 -24.42570 -23.90973 -23.31709 -22.16468 -19.78491 -18.43198 -17.87861 -17.61473 -17.12025 -16.49905 -16.25749 -15.84677 -15.42945 -14.96106 -14.87161 -14.35823 -14.24076 -14.03058 -13.59006 -13.41895 -13.28197 -13.09942 -12.93939 -12.74461 -12.65652 -12.37998 -12.23417 -12.12355 -12.04590 -11.86020 -11.81835 -10.97009 -10.60265 -10.28705 -9.80046 -9.67025 -9.51158 -8.16476 -6.27304 0.39841 0.51937 1.37305 1.38326 1.50092 1.95229 2.25706 2.45024 2.99512 3.11993 3.83652 3.90865 4.12744 4.15430 4.17746 4.29317 4.42881 4.44533 4.58449 4.63919 4.72584 4.75706 4.80158 4.95618 4.98220 5.05434 5.10127 5.12247 5.17818 5.41296 5.47069 5.57309 5.62538 5.67488 5.73208 5.80793 5.96148 6.14371 6.21037 6.61833 6.78914 7.37642 7.53500 8.88698 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.006551 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.398278 B = 4273.404841 C = 5184.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.611 5.611 4 C 0.153 3.847 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.123 4.123 9 C -0.124 4.124 10 C -0.108 4.108 11 C 0.522 3.478 12 O -0.587 6.587 13 C 0.030 3.970 14 H 0.041 0.959 15 C -0.122 4.122 16 C -0.528 4.528 17 H 0.039 0.961 18 C 0.022 3.978 19 N -0.907 5.907 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.272 1.272 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.055 0.945 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -3.850 -16.833 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.343 5.343 4 C 0.031 3.969 5 C -0.116 4.116 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.126 4.126 11 C 0.313 3.687 12 O -0.467 6.467 13 C 0.009 3.991 14 H 0.059 0.941 15 C -0.180 4.180 16 C -0.566 4.566 17 H 0.057 0.943 18 C -0.177 4.177 19 N -0.546 5.546 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.221 -3.369 -16.670 17.051 hybrid contribution 0.768 0.779 1.144 1.583 sum -0.453 -2.590 -15.526 15.747 Atomic orbital electron populations 1.22226 0.94393 1.03168 1.02430 1.21807 0.95567 0.81190 1.03878 1.48195 1.65143 1.15219 1.05754 1.20354 0.94190 0.97268 0.85122 1.20388 0.96295 0.96713 0.98175 1.21224 0.94385 0.99777 0.99039 1.21361 0.96611 0.99442 0.98106 1.21485 1.00388 0.94630 0.97611 1.21521 0.92590 0.99867 1.00240 1.21331 0.98711 0.96481 0.96121 1.21602 0.73691 0.87254 0.86149 1.90479 1.49877 1.19233 1.87146 1.18785 0.95998 0.95222 0.89061 0.94103 1.21621 0.94753 0.98361 1.03229 1.21233 1.21909 1.13196 1.00259 0.94256 1.25545 0.97746 0.95370 0.99066 1.69934 1.41245 1.21806 1.21663 0.85655 0.79575 0.78497 0.78550 1.19800 1.20682 1.19652 0.93842 0.90881 0.89679 0.88445 0.91037 0.86604 0.91867 0.88789 0.85548 0.83632 0.82929 0.83414 0.90975 0.96677 0.92598 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.76 71.98 0.70 -3.09 16 2 C 0.10 2.75 5.87 86.38 0.51 3.26 16 3 N -0.61 -21.89 2.46 -826.16 -2.03 -23.92 16 4 C 0.15 4.65 5.58 85.63 0.48 5.12 16 5 C -0.11 -3.44 5.46 -19.87 -0.11 -3.55 16 6 C -0.13 -4.29 9.70 22.27 0.22 -4.07 16 7 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 8 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 9 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 10 C -0.11 -2.50 9.70 22.27 0.22 -2.28 16 11 C 0.52 24.98 6.73 87.66 0.59 25.57 16 12 O -0.59 -32.28 15.16 -3.05 -0.05 -32.33 16 13 C 0.03 1.57 1.86 -12.29 -0.02 1.55 16 14 H 0.04 2.15 6.14 -2.38 -0.01 2.14 16 15 C -0.12 -5.87 9.05 71.98 0.65 -5.22 16 16 C -0.53 -31.42 8.33 25.60 0.21 -31.20 16 17 H 0.04 2.51 7.05 -2.91 -0.02 2.49 16 18 C 0.02 1.26 5.26 84.65 0.45 1.70 16 19 N -0.91 -51.39 11.30 21.45 0.24 -51.15 16 20 Si 0.95 45.68 29.54 68.60 2.03 47.70 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H 0.04 1.22 6.22 -2.39 -0.01 1.20 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 2.11 8.13 -2.39 -0.02 2.09 16 28 H 0.07 2.38 5.55 -2.39 -0.01 2.37 16 29 H 0.12 2.53 8.02 -2.39 -0.02 2.51 16 30 H 0.06 2.22 7.31 -2.39 -0.02 2.20 16 31 H 0.09 3.76 7.82 -2.91 -0.02 3.73 16 32 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.07 3.82 5.86 -2.38 -0.01 3.81 16 37 H 0.01 0.71 8.10 -2.39 -0.02 0.69 16 38 H 0.06 2.24 5.37 -2.38 -0.01 2.23 16 39 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -71.05 319.60 5.78 -65.28 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.03 Total: 15.30 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.56 Total: -20.89 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.79 Total: -75.07 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.05 5.78 -65.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.662 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds