Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47398 * 2 1 4 4 C 1.50695 * 109.47063 * 120.00181 * 2 1 3 5 5 C 1.38139 * 120.03820 * 305.22030 * 4 2 1 6 6 C 1.38260 * 120.07087 * 180.27323 * 5 4 2 7 7 C 1.38301 * 120.14257 * 359.72930 * 6 5 4 8 8 C 1.38089 * 120.07154 * 359.97438 * 7 6 5 9 9 C 1.38855 * 120.03711 * 124.94786 * 4 2 1 10 10 N 1.39929 * 120.06787 * 359.97438 * 9 4 2 11 11 C 1.34780 * 119.99632 * 154.83143 * 10 9 4 12 12 O 1.21289 * 119.99968 * 354.49823 * 11 10 9 13 13 C 1.50703 * 119.99535 * 174.50012 * 11 10 9 14 14 H 1.08997 * 109.46756 * 299.99432 * 13 11 10 15 15 C 1.53001 * 109.47085 * 60.00030 * 13 11 10 16 16 C 1.50701 * 109.46656 * 179.97438 * 13 11 10 17 17 H 1.08002 * 120.00406 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31520 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00410 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46750 * 60.00138 * 20 18 16 22 22 H 1.48501 * 109.47611 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47204 * 300.00582 * 20 18 16 24 24 H 1.09005 * 109.46907 * 59.99962 * 1 2 3 25 25 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 300.00006 * 1 2 3 27 27 H 1.09007 * 109.47034 * 239.99894 * 2 1 3 28 28 H 1.08997 * 109.47511 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47144 * 300.00532 * 3 2 1 30 30 H 1.08997 * 109.46974 * 59.99884 * 3 2 1 31 31 H 1.07994 * 119.96182 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.92612 * 179.74570 * 6 5 4 33 33 H 1.07996 * 119.96466 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.03723 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99685 * 334.82797 * 10 9 4 36 36 H 1.09002 * 109.46895 * 179.97438 * 15 13 11 37 37 H 1.09000 * 109.47111 * 299.99760 * 15 13 11 38 38 H 1.09001 * 109.46964 * 59.99782 * 15 13 11 39 39 H 0.96996 * 119.99842 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6126 -0.3053 2.4826 6 6 2.0774 -0.9530 3.6122 7 6 2.9592 -2.0116 3.4924 8 6 3.3779 -2.4254 2.2432 9 6 2.9132 -1.7766 1.1065 10 7 3.3355 -2.1935 -0.1608 11 6 4.5123 -2.8352 -0.3016 12 8 5.2510 -2.9634 0.6518 13 6 4.9102 -3.3934 -1.6437 14 1 4.1705 -4.1261 -1.9662 15 6 4.9835 -2.2581 -2.6668 16 6 6.2590 -4.0562 -1.5321 17 1 6.7761 -4.0721 -0.5840 18 6 6.8324 -4.6434 -2.6400 19 7 6.2024 -4.6245 -3.7943 20 14 8.5045 -5.4644 -2.5019 21 1 8.4347 -6.5656 -1.5081 22 1 8.8967 -6.0145 -3.8243 23 1 9.5119 -4.4652 -2.0635 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.9244 0.5213 2.5795 32 1 1.7509 -0.6317 4.5902 33 1 3.3202 -2.5157 4.3766 34 1 4.0669 -3.2519 2.1503 35 1 2.7812 -2.0206 -0.9378 36 1 5.2717 -2.6618 -3.6374 37 1 4.0081 -1.7783 -2.7476 38 1 5.7232 -1.5255 -2.3441 39 1 6.6060 -5.0372 -4.5738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = -26.935410 kcal Electronic energy + Delta-G solvation = -19670.660566 eV Core-core repulsion = 16770.556410 eV Total energy + Delta-G solvation = -2900.104157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28015 -38.25839 -35.31460 -34.11628 -33.84060 -30.79056 -29.66781 -28.66248 -27.16103 -25.20454 -23.66459 -23.26811 -21.53883 -19.84960 -19.37141 -17.64852 -16.37701 -15.91478 -15.50875 -14.94967 -14.50448 -14.41294 -14.04417 -13.64487 -13.45321 -13.40837 -13.10641 -12.61565 -12.38816 -12.06849 -11.97513 -11.74749 -11.50953 -11.16000 -11.03332 -10.81261 -10.73469 -10.63355 -10.60906 -10.35643 -10.01518 -9.93634 -9.06190 -8.72700 -8.48734 -8.34720 -7.59886 -6.08188 -4.12077 1.57508 1.68420 3.33927 3.36593 3.41529 3.49628 3.71659 4.13356 4.43411 4.71143 4.82268 5.18176 5.23133 5.25265 5.28608 5.36962 5.53505 5.58615 5.72343 5.78592 5.87265 5.90599 5.97259 6.08671 6.20676 6.23959 6.35200 6.51296 6.62856 6.72016 6.74752 6.81615 6.85736 6.93449 7.36606 7.44337 7.68660 7.89763 8.03423 8.29661 8.95518 9.01765 9.53687 10.99407 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027475 B = 0.005246 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.846063 B = 5336.364540 C = 6081.462898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.097 4.097 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.135 4.135 9 C 0.170 3.830 10 N -0.685 5.685 11 C 0.518 3.482 12 O -0.521 6.521 13 C 0.031 3.969 14 H 0.057 0.943 15 C -0.134 4.134 16 C -0.504 4.504 17 H 0.074 0.926 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.406 0.594 36 H 0.096 0.904 37 H 0.011 0.989 38 H 0.033 0.967 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 9.170 7.294 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.172 4.172 7 C -0.122 4.122 8 C -0.155 4.155 9 C 0.073 3.927 10 N -0.330 5.330 11 C 0.309 3.691 12 O -0.395 6.395 13 C 0.010 3.990 14 H 0.074 0.926 15 C -0.192 4.192 16 C -0.543 4.543 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.243 0.757 36 H 0.114 0.886 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.141 8.944 7.697 16.228 hybrid contribution 0.593 -0.328 -0.348 0.762 sum -10.548 8.617 7.348 15.476 Atomic orbital electron populations 1.21863 0.94443 1.01972 1.01691 1.19991 0.95730 0.96126 0.95450 1.21811 1.01514 0.94902 1.01530 1.19533 1.01414 0.96135 0.95333 1.20646 0.99858 0.99598 0.91412 1.20960 1.00071 0.98149 0.98041 1.21013 0.97163 0.97043 0.97026 1.21514 1.01586 1.01462 0.90961 1.17841 0.95416 0.93243 0.86182 1.44231 1.22656 1.58722 1.07383 1.22289 0.78187 0.75117 0.93464 1.90499 1.51016 1.55985 1.42008 1.18917 0.99168 0.94953 0.85972 0.92581 1.21776 0.96938 0.96932 1.03590 1.21068 1.01792 1.34697 0.96698 0.90741 1.24943 0.98043 0.96005 0.95131 1.69855 1.38516 1.44958 1.00157 0.86480 0.83765 0.79759 0.76991 1.20144 1.21326 1.20163 0.92496 0.92542 0.92501 0.90854 0.92447 0.92508 0.92605 0.86422 0.86696 0.86307 0.83543 0.75708 0.88553 0.96978 0.94794 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.95 37.16 0.33 -1.05 16 2 C -0.05 -0.64 3.02 -91.78 -0.28 -0.92 16 3 C -0.14 -1.53 9.06 37.16 0.34 -1.19 16 4 C -0.12 -1.72 4.80 -104.43 -0.50 -2.22 16 5 C -0.10 -1.23 8.75 -39.61 -0.35 -1.58 16 6 C -0.15 -1.97 10.04 -39.55 -0.40 -2.37 16 7 C -0.10 -1.52 10.04 -39.61 -0.40 -1.92 16 8 C -0.13 -2.41 8.72 -39.39 -0.34 -2.75 16 9 C 0.17 2.92 6.41 -83.69 -0.54 2.39 16 10 N -0.68 -12.44 5.04 -9.86 -0.05 -12.49 16 11 C 0.52 11.68 6.95 -10.98 -0.08 11.60 16 12 O -0.52 -13.17 12.63 5.55 0.07 -13.10 16 13 C 0.03 0.75 2.65 -92.92 -0.25 0.51 16 14 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.13 -3.02 8.86 37.16 0.33 -2.69 16 16 C -0.50 -14.05 8.37 -34.44 -0.29 -14.34 16 17 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.90 -24.74 11.32 55.43 0.63 -24.11 16 20 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.50 7.12 -51.93 -0.37 0.13 16 27 H 0.07 0.90 5.87 -51.93 -0.30 0.60 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.55 7.71 -51.93 -0.40 0.15 16 31 H 0.12 1.21 7.10 -52.49 -0.37 0.83 16 32 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.15 2.97 5.80 -52.49 -0.30 2.67 16 35 H 0.41 6.36 6.05 -40.82 -0.25 6.11 16 36 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 37 H 0.01 0.21 7.45 -51.93 -0.39 -0.17 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -29.82 314.98 -7.71 -37.53 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.57 Total: 5.84 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.51 Total: -14.98 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.58 Total: -36.60 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.82 -7.71 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.593 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds