Wall clock time and date at job start Mon Mar 30 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47398 * 2 1 4 4 C 1.50695 * 109.47063 * 120.00181 * 2 1 3 5 5 C 1.38139 * 120.03820 * 305.22030 * 4 2 1 6 6 C 1.38260 * 120.07087 * 180.27323 * 5 4 2 7 7 C 1.38301 * 120.14257 * 359.72930 * 6 5 4 8 8 C 1.38089 * 120.07154 * 359.97438 * 7 6 5 9 9 C 1.38855 * 120.03711 * 124.94786 * 4 2 1 10 10 N 1.39929 * 120.06787 * 359.97438 * 9 4 2 11 11 C 1.34780 * 119.99632 * 154.83143 * 10 9 4 12 12 O 1.21289 * 119.99968 * 354.49823 * 11 10 9 13 13 C 1.50703 * 119.99535 * 174.50012 * 11 10 9 14 14 H 1.08997 * 109.46756 * 299.99432 * 13 11 10 15 15 C 1.53001 * 109.47085 * 60.00030 * 13 11 10 16 16 C 1.50701 * 109.46656 * 179.97438 * 13 11 10 17 17 H 1.08002 * 120.00406 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31520 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00410 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46750 * 60.00138 * 20 18 16 22 22 H 1.48501 * 109.47611 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47204 * 300.00582 * 20 18 16 24 24 H 1.09005 * 109.46907 * 59.99962 * 1 2 3 25 25 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 300.00006 * 1 2 3 27 27 H 1.09007 * 109.47034 * 239.99894 * 2 1 3 28 28 H 1.08997 * 109.47511 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47144 * 300.00532 * 3 2 1 30 30 H 1.08997 * 109.46974 * 59.99884 * 3 2 1 31 31 H 1.07994 * 119.96182 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.92612 * 179.74570 * 6 5 4 33 33 H 1.07996 * 119.96466 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.03723 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99685 * 334.82797 * 10 9 4 36 36 H 1.09002 * 109.46895 * 179.97438 * 15 13 11 37 37 H 1.09000 * 109.47111 * 299.99760 * 15 13 11 38 38 H 1.09001 * 109.46964 * 59.99782 * 15 13 11 39 39 H 0.96996 * 119.99842 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6126 -0.3053 2.4826 6 6 2.0774 -0.9530 3.6122 7 6 2.9592 -2.0116 3.4924 8 6 3.3779 -2.4254 2.2432 9 6 2.9132 -1.7766 1.1065 10 7 3.3355 -2.1935 -0.1608 11 6 4.5123 -2.8352 -0.3016 12 8 5.2510 -2.9634 0.6518 13 6 4.9102 -3.3934 -1.6437 14 1 4.1705 -4.1261 -1.9662 15 6 4.9835 -2.2581 -2.6668 16 6 6.2590 -4.0562 -1.5321 17 1 6.7761 -4.0721 -0.5840 18 6 6.8324 -4.6434 -2.6400 19 7 6.2024 -4.6245 -3.7943 20 14 8.5045 -5.4644 -2.5019 21 1 8.4347 -6.5656 -1.5081 22 1 8.8967 -6.0145 -3.8243 23 1 9.5119 -4.4652 -2.0635 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.9244 0.5213 2.5795 32 1 1.7509 -0.6317 4.5902 33 1 3.3202 -2.5157 4.3766 34 1 4.0669 -3.2519 2.1503 35 1 2.7812 -2.0206 -0.9378 36 1 5.2717 -2.6618 -3.6374 37 1 4.0081 -1.7783 -2.7476 38 1 5.7232 -1.5255 -2.3441 39 1 6.6060 -5.0372 -4.5738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:44 Heat of formation + Delta-G solvation = -43.395218 kcal Electronic energy + Delta-G solvation = -19671.374317 eV Core-core repulsion = 16770.556410 eV Total energy + Delta-G solvation = -2900.817907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68858 -39.71675 -36.33365 -35.85211 -35.58659 -32.70584 -30.79753 -29.98076 -27.94022 -27.25074 -25.16247 -24.52082 -22.98572 -21.02735 -20.85925 -19.04007 -18.30867 -17.59833 -16.87311 -16.38892 -16.15522 -15.87028 -15.27801 -14.82570 -14.77220 -14.60276 -14.47199 -14.35522 -13.57416 -13.32911 -13.04302 -13.00621 -12.90460 -12.80356 -12.68448 -12.47036 -12.27912 -12.04256 -12.01653 -11.72664 -11.53713 -11.31889 -11.10499 -10.62240 -10.31238 -9.62745 -8.90706 -8.18458 -6.29351 0.39267 0.50362 1.40229 1.41479 1.50050 1.81837 2.20524 2.45487 2.93113 3.11562 3.72570 3.88012 4.04880 4.28574 4.31613 4.33993 4.43240 4.55201 4.62457 4.68918 4.82220 4.86465 4.87192 4.93719 4.98791 5.03436 5.11281 5.23773 5.32729 5.41023 5.43582 5.48783 5.59830 5.65139 5.67585 5.71691 5.89585 6.14721 6.19289 6.59103 6.78768 7.29503 7.41274 8.87383 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027475 B = 0.005246 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.846063 B = 5336.364540 C = 6081.462898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.093 4.093 6 C -0.139 4.139 7 C -0.112 4.112 8 C -0.164 4.164 9 C 0.133 3.867 10 N -0.668 5.668 11 C 0.520 3.480 12 O -0.558 6.558 13 C 0.027 3.973 14 H 0.045 0.955 15 C -0.121 4.121 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.273 1.273 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.024 0.976 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 11.110 7.987 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.158 4.158 7 C -0.131 4.131 8 C -0.184 4.184 9 C 0.038 3.962 10 N -0.314 5.314 11 C 0.311 3.689 12 O -0.436 6.436 13 C 0.006 3.994 14 H 0.063 0.937 15 C -0.179 4.179 16 C -0.570 4.570 17 H 0.068 0.932 18 C -0.178 4.178 19 N -0.548 5.548 20 Si 0.782 3.218 21 H -0.202 1.202 22 H -0.198 1.198 23 H -0.202 1.202 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.135 10.906 8.383 19.019 hybrid contribution 1.098 -0.879 -0.480 1.486 sum -12.037 10.026 7.903 17.546 Atomic orbital electron populations 1.21835 0.92321 1.02075 1.03240 1.20091 0.97411 0.96303 0.93833 1.21802 1.00103 0.94390 1.03200 1.19852 0.99718 0.94691 0.97287 1.21104 0.99582 1.00008 0.90455 1.21404 0.98044 0.96356 0.99958 1.21236 0.97675 0.97958 0.96188 1.21399 1.02423 1.01627 0.93000 1.18069 0.97666 0.95348 0.85102 1.43812 1.21249 1.57648 1.08693 1.21843 0.79287 0.75565 0.92225 1.90487 1.52602 1.57796 1.42681 1.18831 0.97417 0.95367 0.87767 0.93740 1.21585 0.98818 0.96005 1.01497 1.21213 1.03558 1.36241 0.96012 0.93224 1.25582 1.01059 0.96313 0.94814 1.69931 1.39513 1.44966 1.00401 0.85634 0.79989 0.78722 0.77429 1.20204 1.19797 1.20209 0.90971 0.93178 0.90988 0.91874 0.94637 0.90810 0.91048 0.82790 0.82978 0.84740 0.87231 0.74409 0.90639 0.93042 0.95724 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.95 71.98 0.64 -1.53 16 2 C -0.06 -1.22 3.02 -11.54 -0.03 -1.25 16 3 C -0.14 -2.59 9.06 71.98 0.65 -1.94 16 4 C -0.11 -2.98 4.80 -19.74 -0.09 -3.08 16 5 C -0.09 -2.02 8.75 22.25 0.19 -1.82 16 6 C -0.14 -3.10 10.04 22.29 0.22 -2.87 16 7 C -0.11 -3.19 10.04 22.25 0.22 -2.97 16 8 C -0.16 -6.06 8.72 22.39 0.20 -5.87 16 9 C 0.13 4.63 6.41 38.15 0.24 4.87 16 10 N -0.67 -24.90 5.04 -303.49 -1.53 -26.43 16 11 C 0.52 24.58 6.95 87.66 0.61 25.19 16 12 O -0.56 -30.08 12.63 -3.06 -0.04 -30.12 16 13 C 0.03 1.39 2.65 -12.28 -0.03 1.35 16 14 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.12 -5.51 8.86 71.98 0.64 -4.88 16 16 C -0.53 -30.88 8.37 25.60 0.21 -30.67 16 17 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 18 C 0.02 1.22 5.30 84.65 0.45 1.67 16 19 N -0.91 -50.80 11.32 21.45 0.24 -50.56 16 20 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.93 7.12 -2.39 -0.02 0.91 16 27 H 0.06 1.45 5.87 -2.38 -0.01 1.43 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.11 7.71 -2.39 -0.02 1.10 16 31 H 0.15 2.26 7.10 -2.91 -0.02 2.24 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.11 4.83 5.80 -2.91 -0.02 4.82 16 35 H 0.42 13.10 6.05 -92.71 -0.56 12.54 16 36 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 37 H 0.05 1.87 7.45 -2.39 -0.02 1.86 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.47 314.98 5.31 -62.15 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.49 Total: 21.74 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.13 Total: -23.79 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.29 Total: -76.99 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.04 Total: -30.12 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.47 5.31 -62.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.758 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds