Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 C 1.50704 * 109.46861 * 239.99710 * 2 1 3 5 5 C 1.38276 * 119.93132 * 59.72979 * 4 2 1 6 6 C 1.38108 * 120.07668 * 179.76639 * 5 4 2 7 7 C 1.38877 * 119.92448 * 0.50413 * 6 5 4 8 8 N 1.39927 * 120.07071 * 179.72558 * 7 6 5 9 9 C 1.34774 * 119.99606 * 213.30987 * 8 7 6 10 10 O 1.21285 * 120.00338 * 5.27965 * 9 8 7 11 11 C 1.50708 * 119.99817 * 185.27780 * 9 8 7 12 12 H 1.08998 * 109.47206 * 300.00624 * 11 9 8 13 13 C 1.53007 * 109.46666 * 59.99805 * 11 9 8 14 14 C 1.50694 * 109.47230 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00069 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99780 * 180.02562 * 14 11 9 17 17 N 1.31517 * 119.99842 * 180.02562 * 16 14 11 18 18 Si 1.86799 * 120.00375 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46874 * 90.00232 * 18 16 14 20 20 H 1.48495 * 109.47619 * 210.00553 * 18 16 14 21 21 H 1.48502 * 109.46933 * 330.00750 * 18 16 14 22 22 C 1.38872 * 119.85901 * 359.74994 * 7 6 5 23 23 C 1.38118 * 119.92889 * 359.97438 * 22 7 6 24 24 H 1.08995 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46532 * 300.00415 * 1 2 3 26 26 H 1.09003 * 109.46528 * 60.00151 * 1 2 3 27 27 H 1.09003 * 109.46774 * 120.00342 * 2 1 3 28 28 H 1.09004 * 109.46717 * 299.99756 * 3 2 1 29 29 H 1.08996 * 109.47205 * 59.99907 * 3 2 1 30 30 H 1.08999 * 109.46633 * 180.02562 * 3 2 1 31 31 H 1.08004 * 119.96164 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.04221 * 180.25219 * 6 5 4 33 33 H 0.96996 * 120.00069 * 33.31321 * 8 7 6 34 34 H 1.08998 * 109.46639 * 60.00472 * 13 11 9 35 35 H 1.08999 * 109.46569 * 180.02562 * 13 11 9 36 36 H 1.08987 * 109.47363 * 300.00176 * 13 11 9 37 37 H 0.97004 * 120.00048 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03738 * 179.97438 * 22 7 6 39 39 H 1.07999 * 119.96069 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6928 -0.2402 -2.4857 6 6 2.1554 -0.8861 -3.6153 7 6 2.9538 -2.0154 -3.4896 8 7 3.4195 -2.6756 -4.6321 9 6 3.5804 -4.0136 -4.6185 10 8 3.2321 -4.6566 -3.6510 11 6 4.1932 -4.7109 -5.8058 12 1 3.5823 -4.5280 -6.6898 13 6 5.6053 -4.1710 -6.0413 14 6 4.2593 -6.1926 -5.5392 15 1 3.8945 -6.5897 -4.6034 16 6 4.7864 -7.0412 -6.4894 17 7 4.8436 -8.3344 -6.2569 18 14 5.4181 -6.3544 -8.1076 19 1 6.8572 -6.0137 -7.9726 20 1 5.2482 -7.3707 -9.1768 21 1 4.6511 -5.1325 -8.4597 22 6 3.2888 -2.4884 -2.2276 23 6 2.8276 -1.8344 -1.1018 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 -0.8901 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4423 -0.0005 31 1 1.0685 0.6358 -2.5828 32 1 1.8931 -0.5159 -4.5954 33 1 3.6265 -2.1703 -5.4337 34 1 6.2163 -4.3539 -5.1573 35 1 6.0484 -4.6750 -6.9003 36 1 5.5571 -3.0995 -6.2343 37 1 5.2142 -8.9315 -6.9256 38 1 3.9092 -3.3666 -2.1265 39 1 3.0874 -2.2020 -0.1201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = -23.184484 kcal Electronic energy + Delta-G solvation = -19129.168861 eV Core-core repulsion = 16229.227357 eV Total energy + Delta-G solvation = -2899.941504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15651 -38.59769 -35.71700 -33.95406 -33.44276 -31.28082 -30.77705 -28.42305 -27.27297 -25.20043 -24.00442 -22.77549 -22.04521 -20.16698 -19.32253 -17.49166 -16.79959 -16.12840 -15.61450 -15.23002 -14.73383 -14.27107 -14.11094 -13.74711 -13.62951 -13.30630 -13.12021 -12.81251 -12.77639 -12.48869 -12.34722 -12.15507 -11.70893 -11.36565 -11.25007 -11.05496 -10.86705 -10.69441 -10.66228 -10.35783 -9.80934 -9.69136 -9.16739 -8.90753 -8.67112 -8.61427 -7.69464 -6.09493 -4.10735 1.48312 1.59802 3.19936 3.26970 3.33494 3.36547 3.60622 4.02599 4.33593 4.65939 4.73103 5.08152 5.09154 5.16164 5.19630 5.37358 5.46724 5.49404 5.59695 5.63274 5.67805 5.83098 5.84791 5.91670 6.04597 6.10597 6.12925 6.16815 6.25146 6.35518 6.49928 6.56802 6.70042 6.79046 6.84418 7.08079 7.32179 7.47326 7.93947 8.48098 8.89258 9.09203 9.48491 11.03303 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.048504 B = 0.003987 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.137312 B = 7021.810529 C = 7279.928805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.107 4.107 5 C -0.096 4.096 6 C -0.155 4.155 7 C 0.160 3.840 8 N -0.690 5.690 9 C 0.526 3.474 10 O -0.508 6.508 11 C -0.003 4.003 12 H 0.055 0.945 13 C -0.146 4.146 14 C -0.509 4.509 15 H 0.094 0.906 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.885 3.115 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.267 1.267 22 C -0.122 4.122 23 C -0.097 4.097 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.406 0.594 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.136 0.864 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 19.948 7.130 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.176 4.176 7 C 0.065 3.935 8 N -0.336 5.336 9 C 0.316 3.684 10 O -0.380 6.380 11 C -0.024 4.024 12 H 0.072 0.928 13 C -0.203 4.203 14 C -0.547 4.547 15 H 0.112 0.888 16 C -0.130 4.130 17 N -0.531 5.531 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.192 1.192 22 C -0.142 4.142 23 C -0.115 4.115 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.241 0.759 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.725 19.194 7.714 21.219 hybrid contribution 0.528 0.443 -1.456 1.611 sum -4.197 19.637 6.257 21.032 Atomic orbital electron populations 1.21859 0.94645 1.02067 1.01540 1.20052 0.95710 0.95771 0.95586 1.21853 1.01216 0.95359 1.01565 1.19716 0.99976 0.96713 0.94435 1.20632 0.99790 0.99596 0.91476 1.20852 0.99770 0.97923 0.99039 1.17897 0.94958 0.93138 0.87491 1.44054 1.66994 1.08634 1.13917 1.21551 0.76575 0.79834 0.90441 1.90601 1.47025 1.64682 1.35709 1.19330 0.93180 0.97770 0.92153 0.92775 1.22129 0.98630 0.97745 1.01818 1.20908 1.41310 0.87032 1.05460 0.88799 1.24974 0.95385 0.94770 0.97916 1.69880 1.45496 1.02632 1.35140 0.86912 0.79340 0.78407 0.83874 1.20442 1.22219 1.19245 1.21239 1.01159 1.00994 0.90818 1.20916 0.97604 0.94797 0.98230 0.92462 0.92720 0.92566 0.90710 0.92582 0.92722 0.92584 0.86330 0.86087 0.75913 0.92234 0.93050 0.94727 0.92471 0.84591 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.00 37.16 0.33 -0.92 16 2 C -0.05 -0.50 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.16 9.01 37.16 0.33 -0.83 16 4 C -0.11 -1.31 4.78 -104.59 -0.50 -1.81 16 5 C -0.10 -1.15 8.70 -39.61 -0.34 -1.50 16 6 C -0.16 -2.06 9.96 -39.39 -0.39 -2.45 16 7 C 0.16 2.60 6.28 -83.69 -0.53 2.07 16 8 N -0.69 -11.60 5.19 -9.86 -0.05 -11.65 16 9 C 0.53 11.40 6.89 -10.98 -0.08 11.32 16 10 O -0.51 -12.86 13.14 5.55 0.07 -12.79 16 11 C 0.00 -0.06 2.23 -92.92 -0.21 -0.27 16 12 H 0.05 1.20 7.20 -51.93 -0.37 0.82 16 13 C -0.15 -2.92 8.58 37.16 0.32 -2.61 16 14 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 15 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.88 21.01 24.37 -169.99 -4.14 16.87 16 19 H -0.28 -6.37 6.87 56.52 0.39 -5.99 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -5.87 6.53 56.52 0.37 -5.50 16 22 C -0.12 -2.06 8.66 -39.39 -0.34 -2.40 16 23 C -0.10 -1.36 9.66 -39.61 -0.38 -1.74 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 27 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 28 H 0.06 0.44 7.40 -51.93 -0.38 0.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.12 1.14 7.09 -52.48 -0.37 0.77 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.41 5.45 8.41 -40.82 -0.34 5.11 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 36 H 0.03 0.54 7.69 -51.94 -0.40 0.14 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.14 2.62 6.41 -52.48 -0.34 2.28 16 39 H 0.12 1.47 7.94 -52.49 -0.42 1.05 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -32.47 313.14 -6.77 -39.24 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.67 Total: 5.07 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.47 Total: -14.82 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.72 Total: -38.29 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.47 -6.77 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.059 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds