Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 C 1.50704 * 109.46861 * 239.99710 * 2 1 3 5 5 C 1.38276 * 119.93132 * 59.72979 * 4 2 1 6 6 C 1.38108 * 120.07668 * 179.76639 * 5 4 2 7 7 C 1.38877 * 119.92448 * 0.50413 * 6 5 4 8 8 N 1.39927 * 120.07071 * 179.72558 * 7 6 5 9 9 C 1.34774 * 119.99606 * 213.30987 * 8 7 6 10 10 O 1.21285 * 120.00338 * 5.27965 * 9 8 7 11 11 C 1.50708 * 119.99817 * 185.27780 * 9 8 7 12 12 H 1.08998 * 109.47206 * 300.00624 * 11 9 8 13 13 C 1.53007 * 109.46666 * 59.99805 * 11 9 8 14 14 C 1.50694 * 109.47230 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00069 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99780 * 180.02562 * 14 11 9 17 17 N 1.31517 * 119.99842 * 180.02562 * 16 14 11 18 18 Si 1.86799 * 120.00375 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46874 * 90.00232 * 18 16 14 20 20 H 1.48495 * 109.47619 * 210.00553 * 18 16 14 21 21 H 1.48502 * 109.46933 * 330.00750 * 18 16 14 22 22 C 1.38872 * 119.85901 * 359.74994 * 7 6 5 23 23 C 1.38118 * 119.92889 * 359.97438 * 22 7 6 24 24 H 1.08995 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46532 * 300.00415 * 1 2 3 26 26 H 1.09003 * 109.46528 * 60.00151 * 1 2 3 27 27 H 1.09003 * 109.46774 * 120.00342 * 2 1 3 28 28 H 1.09004 * 109.46717 * 299.99756 * 3 2 1 29 29 H 1.08996 * 109.47205 * 59.99907 * 3 2 1 30 30 H 1.08999 * 109.46633 * 180.02562 * 3 2 1 31 31 H 1.08004 * 119.96164 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.04221 * 180.25219 * 6 5 4 33 33 H 0.96996 * 120.00069 * 33.31321 * 8 7 6 34 34 H 1.08998 * 109.46639 * 60.00472 * 13 11 9 35 35 H 1.08999 * 109.46569 * 180.02562 * 13 11 9 36 36 H 1.08987 * 109.47363 * 300.00176 * 13 11 9 37 37 H 0.97004 * 120.00048 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03738 * 179.97438 * 22 7 6 39 39 H 1.07999 * 119.96069 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.6928 -0.2402 -2.4857 6 6 2.1554 -0.8861 -3.6153 7 6 2.9538 -2.0154 -3.4896 8 7 3.4195 -2.6756 -4.6321 9 6 3.5804 -4.0136 -4.6185 10 8 3.2321 -4.6566 -3.6510 11 6 4.1932 -4.7109 -5.8058 12 1 3.5823 -4.5280 -6.6898 13 6 5.6053 -4.1710 -6.0413 14 6 4.2593 -6.1926 -5.5392 15 1 3.8945 -6.5897 -4.6034 16 6 4.7864 -7.0412 -6.4894 17 7 4.8436 -8.3344 -6.2569 18 14 5.4181 -6.3544 -8.1076 19 1 6.8572 -6.0137 -7.9726 20 1 5.2482 -7.3707 -9.1768 21 1 4.6511 -5.1325 -8.4597 22 6 3.2888 -2.4884 -2.2276 23 6 2.8276 -1.8344 -1.1018 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 -0.8901 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4423 -0.0005 31 1 1.0685 0.6358 -2.5828 32 1 1.8931 -0.5159 -4.5954 33 1 3.6265 -2.1703 -5.4337 34 1 6.2163 -4.3539 -5.1573 35 1 6.0484 -4.6750 -6.9003 36 1 5.5571 -3.0995 -6.2343 37 1 5.2142 -8.9315 -6.9256 38 1 3.9092 -3.3666 -2.1265 39 1 3.0874 -2.2020 -0.1201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = -44.740710 kcal Electronic energy + Delta-G solvation = -19130.103609 eV Core-core repulsion = 16229.227357 eV Total energy + Delta-G solvation = -2900.876252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53617 -39.89578 -36.85617 -35.87213 -34.74955 -33.25230 -31.86915 -29.58387 -27.90851 -27.15620 -25.46116 -24.02347 -23.27057 -21.38688 -20.66249 -18.98770 -18.64926 -17.63756 -16.86502 -16.69969 -16.35219 -15.54453 -15.38256 -14.95825 -14.80487 -14.65141 -14.37697 -14.17526 -14.05053 -13.70251 -13.58384 -13.34701 -12.93295 -12.84148 -12.56566 -12.32561 -12.19112 -12.00891 -11.71364 -11.50722 -11.48173 -11.26929 -11.12170 -10.79285 -10.51209 -9.83242 -8.91133 -8.29147 -6.38140 0.33855 0.49370 1.32974 1.39630 1.50977 1.76235 2.20266 2.33255 2.88709 3.04527 3.81332 3.85829 3.98964 4.11857 4.24615 4.37052 4.39172 4.50370 4.54308 4.57030 4.63142 4.71807 4.78355 4.88146 4.96147 5.01449 5.05973 5.10397 5.19352 5.36208 5.40088 5.43958 5.45887 5.46569 5.51618 5.62875 5.77994 6.14112 6.23032 6.58659 6.78401 7.21970 7.36294 8.88578 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.048504 B = 0.003987 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.137312 B = 7021.810529 C = 7279.928805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.097 4.097 5 C -0.092 4.092 6 C -0.143 4.143 7 C 0.128 3.872 8 N -0.667 5.667 9 C 0.526 3.474 10 O -0.561 6.561 11 C -0.005 4.005 12 H 0.076 0.924 13 C -0.140 4.140 14 C -0.525 4.525 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.952 5.952 18 Si 0.961 3.039 19 H -0.260 1.260 20 H -0.299 1.299 21 H -0.227 1.227 22 C -0.149 4.149 23 C -0.109 4.109 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.425 0.575 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.097 0.903 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 24.595 5.551 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.098 4.098 5 C -0.111 4.111 6 C -0.163 4.163 7 C 0.034 3.966 8 N -0.314 5.314 9 C 0.315 3.685 10 O -0.438 6.438 11 C -0.026 4.026 12 H 0.093 0.907 13 C -0.198 4.198 14 C -0.563 4.563 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.785 3.215 19 H -0.186 1.186 20 H -0.227 1.227 21 H -0.150 1.150 22 C -0.169 4.169 23 C -0.128 4.128 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.305 23.926 6.139 25.265 hybrid contribution 0.610 -0.974 -0.758 1.376 sum -4.694 22.953 5.381 24.038 Atomic orbital electron populations 1.21856 0.93669 1.01573 1.02878 1.20133 0.96409 0.96537 0.94141 1.21832 1.00842 0.94152 1.02837 1.20097 0.98106 0.95464 0.96157 1.21063 0.99197 1.00138 0.90669 1.21166 0.97930 0.96124 1.01061 1.18093 0.97160 0.94731 0.86586 1.43587 1.65938 1.06864 1.15016 1.21347 0.76304 0.81407 0.89400 1.90593 1.49489 1.66318 1.37353 1.19268 0.95739 0.94312 0.93305 0.90682 1.22033 0.95739 1.00922 1.01079 1.21073 1.41124 0.90867 1.03280 0.95288 1.26057 0.95342 0.94743 1.02860 1.70081 1.47230 1.04793 1.37116 0.85691 0.79822 0.78848 0.77122 1.18585 1.22733 1.15005 1.21122 1.02350 1.00694 0.92756 1.21068 0.98262 0.95664 0.97765 0.93882 0.90963 0.91725 0.90698 0.91708 0.91120 0.93199 0.82849 0.83024 0.73645 0.93658 0.93235 0.89436 0.92322 0.88450 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.00 71.98 0.65 -1.41 16 2 C -0.05 -0.88 3.09 -11.54 -0.04 -0.92 16 3 C -0.14 -1.78 9.01 71.98 0.65 -1.13 16 4 C -0.10 -2.18 4.78 -19.84 -0.09 -2.28 16 5 C -0.09 -1.88 8.70 22.25 0.19 -1.68 16 6 C -0.14 -3.34 9.96 22.39 0.22 -3.11 16 7 C 0.13 4.07 6.28 38.15 0.24 4.31 16 8 N -0.67 -21.67 5.19 -303.50 -1.58 -23.24 16 9 C 0.53 23.29 6.89 87.66 0.60 23.90 16 10 O -0.56 -30.55 13.14 -3.04 -0.04 -30.59 16 11 C 0.00 -0.21 2.23 -12.28 -0.03 -0.24 16 12 H 0.08 3.12 7.20 -2.39 -0.02 3.10 16 13 C -0.14 -5.29 8.58 71.98 0.62 -4.68 16 14 C -0.53 -31.49 8.96 25.60 0.23 -31.26 16 15 H 0.03 2.06 7.00 -2.91 -0.02 2.04 16 16 C 0.01 0.38 5.45 84.65 0.46 0.84 16 17 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 18 Si 0.96 42.65 24.37 68.60 1.67 44.32 16 19 H -0.26 -10.80 6.87 99.48 0.68 -10.11 16 20 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.23 -8.58 6.53 99.48 0.65 -7.93 16 22 C -0.15 -5.26 8.66 22.39 0.19 -5.06 16 23 C -0.11 -3.10 9.66 22.25 0.21 -2.88 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.83 7.37 -2.39 -0.02 0.81 16 27 H 0.07 1.24 7.87 -2.39 -0.02 1.22 16 28 H 0.06 0.72 7.40 -2.39 -0.02 0.71 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.15 2.10 7.09 -2.91 -0.02 2.08 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.42 10.02 8.41 -92.71 -0.78 9.24 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.89 3.27 -2.39 -0.01 1.88 16 36 H 0.09 2.37 7.69 -2.39 -0.02 2.35 16 37 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 38 H 0.10 4.15 6.41 -2.91 -0.02 4.13 16 39 H 0.13 3.26 7.94 -2.91 -0.02 3.23 16 Total: -1.00 -78.43 313.14 4.66 -73.77 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.19 Total: 22.42 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 4.12 Total: -25.60 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.28 Total: -84.32 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.04 Total: -30.59 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.67 Total: 44.32 kcal Total: -78.43 4.66 -73.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.031 kcal (2) G-P(sol) polarization free energy of solvation -78.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds