Wall clock time and date at job start Mon Mar 30 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20764 * 119.99712 * 2 1 4 4 C 1.50695 * 120.00152 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47342 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47328 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47108 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00184 * 269.99848 * 7 6 5 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00576 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99572 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47184 * 90.00028 * 13 11 9 15 15 H 1.48499 * 109.47029 * 209.99940 * 13 11 9 16 16 H 1.48497 * 109.47248 * 329.99732 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00277 * 7 6 5 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08991 * 109.47283 * 240.00146 * 1 2 3 24 24 H 1.09005 * 109.47199 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 120.00437 * 1 2 3 26 26 H 1.08999 * 109.47517 * 59.99898 * 4 2 1 27 27 H 1.09005 * 109.47172 * 299.99778 * 4 2 1 28 28 H 1.08995 * 109.47254 * 59.99837 * 5 4 2 29 29 H 1.09000 * 109.47175 * 300.00121 * 5 4 2 30 30 H 1.08995 * 109.46987 * 59.99795 * 6 5 4 31 31 H 1.09000 * 109.47190 * 300.00233 * 6 5 4 32 32 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 33 33 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 34 34 H 0.96997 * 119.99836 * 180.02562 * 12 11 9 35 35 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 36 36 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5298 -2.3505 0.0023 7 7 5.9701 -2.0828 0.0022 8 6 6.6904 -1.9500 -1.2665 9 6 7.1970 -3.3014 -1.7003 10 1 7.0023 -4.1720 -1.0916 11 6 7.9091 -3.4264 -2.8743 12 7 8.3508 -4.6058 -3.2532 13 14 8.2465 -1.9204 -3.9269 14 1 9.5281 -1.2995 -3.5062 15 1 8.3364 -2.3235 -5.3533 16 1 7.1430 -0.9411 -3.7579 17 6 6.6566 -1.9541 1.2118 18 6 8.0222 -1.6997 1.2135 19 6 8.6978 -1.5726 2.4113 20 6 8.0163 -1.6977 3.6080 21 6 6.6568 -1.9509 3.6099 22 6 5.9751 -2.0792 2.4158 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8891 27 1 1.9972 -1.8762 0.8909 28 1 4.0277 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 4.2668 -2.9226 -0.8873 31 1 4.2660 -2.9215 0.8926 32 1 6.0174 -1.5532 -2.0265 33 1 7.5329 -1.2707 -1.1367 34 1 8.8521 -4.6936 -4.0789 35 1 8.5558 -1.6060 0.2792 36 1 9.7597 -1.3752 2.4134 37 1 8.5470 -1.5974 4.5433 38 1 6.1275 -2.0477 4.5463 39 1 4.9133 -2.2774 2.4180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:05 Heat of formation + Delta-G solvation = -14.777256 kcal Electronic energy + Delta-G solvation = -19209.985531 eV Core-core repulsion = 16310.408591 eV Total energy + Delta-G solvation = -2899.576939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57356 -38.89229 -36.10717 -33.50226 -32.41877 -30.71964 -30.23668 -29.25376 -27.81362 -25.38375 -22.81107 -22.05279 -21.16905 -19.69462 -19.48094 -17.08234 -16.90485 -15.94245 -15.75171 -15.20476 -14.99175 -14.62782 -14.24072 -14.15397 -13.48381 -13.39446 -12.94426 -12.82130 -12.53308 -12.35649 -12.27981 -11.90530 -11.69080 -11.55283 -11.47195 -10.99943 -10.79463 -10.61525 -10.49328 -10.25849 -10.03973 -9.73449 -9.55458 -8.95726 -8.65887 -8.30573 -6.44750 -6.14866 -4.14654 1.90561 2.06584 2.28434 3.21991 3.29764 3.31639 3.83021 4.13202 4.32484 4.55291 4.85616 5.01773 5.03661 5.15981 5.20210 5.28083 5.43527 5.50695 5.55618 5.60175 5.75613 5.78142 5.89449 5.98788 6.06792 6.20809 6.26319 6.39417 6.53730 6.56857 6.76264 6.79024 7.06228 7.09430 7.24966 7.45820 7.52948 7.55733 8.05833 8.35398 8.51620 8.92764 9.45483 10.98139 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.007018 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.357304 B = 3988.651330 C = 5750.437069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.351 3.649 3 O -0.457 6.457 4 C -0.170 4.170 5 C -0.132 4.132 6 C 0.128 3.872 7 N -0.605 5.605 8 C 0.221 3.779 9 C -0.533 4.533 10 H 0.077 0.923 11 C 0.073 3.927 12 N -0.895 5.895 13 Si 0.870 3.130 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.239 3.761 18 C -0.187 4.187 19 C -0.076 4.076 20 C -0.202 4.202 21 C -0.079 4.079 22 C -0.216 4.216 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 6.165 8.635 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.330 6.330 4 C -0.208 4.208 5 C -0.171 4.171 6 C 0.003 3.997 7 N -0.310 5.310 8 C 0.100 3.900 9 C -0.572 4.572 10 H 0.095 0.905 11 C -0.129 4.129 12 N -0.533 5.533 13 Si 0.697 3.303 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.190 1.190 17 C 0.133 3.867 18 C -0.209 4.209 19 C -0.095 4.095 20 C -0.222 4.222 21 C -0.098 4.098 22 C -0.239 4.239 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.666 6.601 8.256 15.743 hybrid contribution 0.196 0.446 -0.734 0.881 sum -11.470 7.047 7.522 15.421 Atomic orbital electron populations 1.22336 0.94820 1.04671 1.04445 1.24695 0.91795 0.90612 0.70283 1.90429 1.72066 1.35246 1.35294 1.22086 0.96848 0.97189 1.04697 1.21921 0.92179 0.99359 1.03612 1.21275 0.80863 0.95081 1.02437 1.46714 1.06011 1.74476 1.03831 1.19641 0.92080 0.97523 0.80748 1.21479 1.34728 0.93819 1.07163 0.90531 1.24883 0.95116 0.95689 0.97244 1.69900 1.37094 1.22799 1.23533 0.86943 0.79491 0.83668 0.80214 1.19906 1.20967 1.18989 1.17896 0.91436 0.91429 0.85920 1.20856 0.93189 1.08128 0.98773 1.20822 0.98827 0.97702 0.92185 1.20678 0.94696 1.09614 0.97239 1.20687 0.94300 0.98150 0.96615 1.20560 0.99568 1.12346 0.91419 0.89096 0.90335 0.89040 0.88182 0.88427 0.91372 0.91290 0.90417 0.91573 0.95470 0.95562 0.92526 0.85441 0.87036 0.87560 0.87332 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 10.26 36.00 0.37 -1.08 16 2 C 0.35 3.88 7.27 -29.04 -0.21 3.67 16 3 O -0.46 -7.13 16.71 6.00 0.10 -7.03 16 4 C -0.17 -1.75 5.64 -27.89 -0.16 -1.91 16 5 C -0.13 -1.92 4.83 -26.73 -0.13 -2.05 16 6 C 0.13 2.11 5.16 -4.04 -0.02 2.09 16 7 N -0.61 -12.42 2.59 -173.13 -0.45 -12.87 16 8 C 0.22 5.19 3.98 -5.20 -0.02 5.17 16 9 C -0.53 -14.67 9.94 -34.44 -0.34 -15.02 16 10 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 13 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 17 C 0.24 4.79 6.55 -83.78 -0.55 4.24 16 18 C -0.19 -3.80 9.20 -39.38 -0.36 -4.16 16 19 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 20 C -0.20 -3.24 10.04 -39.54 -0.40 -3.64 16 21 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 22 C -0.22 -3.75 9.21 -39.38 -0.36 -4.12 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.07 0.98 6.20 -51.93 -0.32 0.66 16 32 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.13 2.76 6.15 -52.49 -0.32 2.44 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.73 6.14 -52.48 -0.32 1.41 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -32.24 325.84 -8.27 -40.51 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.86 Total: 2.66 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.08 Total: -18.22 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.33 Total: -38.96 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.10 Total: -7.03 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.24 -8.27 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.736 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds