Wall clock time and date at job start Mon Mar 30 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20764 * 119.99712 * 2 1 4 4 C 1.50695 * 120.00152 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47342 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47328 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47108 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00184 * 269.99848 * 7 6 5 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00576 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99572 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47184 * 90.00028 * 13 11 9 15 15 H 1.48499 * 109.47029 * 209.99940 * 13 11 9 16 16 H 1.48497 * 109.47248 * 329.99732 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00277 * 7 6 5 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08991 * 109.47283 * 240.00146 * 1 2 3 24 24 H 1.09005 * 109.47199 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 120.00437 * 1 2 3 26 26 H 1.08999 * 109.47517 * 59.99898 * 4 2 1 27 27 H 1.09005 * 109.47172 * 299.99778 * 4 2 1 28 28 H 1.08995 * 109.47254 * 59.99837 * 5 4 2 29 29 H 1.09000 * 109.47175 * 300.00121 * 5 4 2 30 30 H 1.08995 * 109.46987 * 59.99795 * 6 5 4 31 31 H 1.09000 * 109.47190 * 300.00233 * 6 5 4 32 32 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 33 33 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 34 34 H 0.96997 * 119.99836 * 180.02562 * 12 11 9 35 35 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 36 36 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5298 -2.3505 0.0023 7 7 5.9701 -2.0828 0.0022 8 6 6.6904 -1.9500 -1.2665 9 6 7.1970 -3.3014 -1.7003 10 1 7.0023 -4.1720 -1.0916 11 6 7.9091 -3.4264 -2.8743 12 7 8.3508 -4.6058 -3.2532 13 14 8.2465 -1.9204 -3.9269 14 1 9.5281 -1.2995 -3.5062 15 1 8.3364 -2.3235 -5.3533 16 1 7.1430 -0.9411 -3.7579 17 6 6.6566 -1.9541 1.2118 18 6 8.0222 -1.6997 1.2135 19 6 8.6978 -1.5726 2.4113 20 6 8.0163 -1.6977 3.6080 21 6 6.6568 -1.9509 3.6099 22 6 5.9751 -2.0792 2.4158 23 1 -0.3633 -0.5138 0.8899 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8891 27 1 1.9972 -1.8762 0.8909 28 1 4.0277 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 4.2668 -2.9226 -0.8873 31 1 4.2660 -2.9215 0.8926 32 1 6.0174 -1.5532 -2.0265 33 1 7.5329 -1.2707 -1.1367 34 1 8.8521 -4.6936 -4.0789 35 1 8.5558 -1.6060 0.2792 36 1 9.7597 -1.3752 2.4134 37 1 8.5470 -1.5974 4.5433 38 1 6.1275 -2.0477 4.5463 39 1 4.9133 -2.2774 2.4180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:05 Heat of formation + Delta-G solvation = -33.429817 kcal Electronic energy + Delta-G solvation = -19210.794366 eV Core-core repulsion = 16310.408591 eV Total energy + Delta-G solvation = -2900.385775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63267 -40.20408 -37.52971 -35.11255 -34.10918 -31.92655 -31.29674 -30.85202 -29.21178 -26.77164 -24.50223 -23.36491 -22.58068 -21.09637 -20.42570 -19.05467 -18.50541 -17.08160 -16.70326 -16.60538 -16.28861 -15.95605 -15.71835 -15.40689 -14.90397 -14.72584 -14.63190 -14.16949 -14.07110 -13.42673 -13.33064 -13.12019 -12.96453 -12.90736 -12.64145 -12.48111 -12.42131 -12.18210 -12.01231 -11.75880 -11.71555 -11.41380 -10.84242 -10.65636 -10.44820 -9.68558 -8.34971 -7.96293 -6.39282 0.68196 0.89931 1.07855 1.31236 1.32053 1.42269 2.27934 2.46079 2.98858 3.13508 3.25846 3.93652 4.01260 4.14756 4.20936 4.25536 4.41689 4.47297 4.50868 4.63539 4.70182 4.72774 4.75764 4.80948 4.83306 4.87312 4.95935 5.02519 5.14885 5.26764 5.30643 5.34390 5.45480 5.59799 5.74212 5.86496 6.09536 6.23264 6.59625 6.64700 6.69947 6.88164 7.26180 8.82248 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.007018 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.357304 B = 3988.651330 C = 5750.437069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.352 3.648 3 O -0.514 6.514 4 C -0.167 4.167 5 C -0.119 4.119 6 C 0.127 3.873 7 N -0.621 5.621 8 C 0.234 3.766 9 C -0.532 4.532 10 H 0.030 0.970 11 C 0.017 3.983 12 N -0.943 5.943 13 Si 0.939 3.061 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.249 1.249 17 C 0.209 3.791 18 C -0.223 4.223 19 C -0.083 4.083 20 C -0.196 4.196 21 C -0.075 4.075 22 C -0.217 4.217 23 H 0.118 0.882 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 6.930 10.368 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.232 3.768 3 O -0.392 6.392 4 C -0.204 4.204 5 C -0.158 4.158 6 C 0.004 3.996 7 N -0.327 5.327 8 C 0.111 3.889 9 C -0.570 4.570 10 H 0.048 0.952 11 C -0.181 4.181 12 N -0.583 5.583 13 Si 0.762 3.238 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.173 1.173 17 C 0.105 3.895 18 C -0.245 4.245 19 C -0.102 4.102 20 C -0.216 4.216 21 C -0.093 4.093 22 C -0.239 4.239 23 H 0.137 0.863 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.488 7.358 10.026 18.347 hybrid contribution 0.770 0.109 -1.113 1.358 sum -12.718 7.467 8.913 17.232 Atomic orbital electron populations 1.22331 0.91261 1.05107 1.06756 1.25303 0.93761 0.89764 0.67999 1.90428 1.73451 1.36970 1.38314 1.22148 0.93404 0.97679 1.07216 1.21726 0.95161 0.97442 1.01513 1.21445 0.79040 0.96241 1.02879 1.46702 1.07409 1.75616 1.02987 1.19269 0.92209 0.94855 0.82546 1.21627 1.34618 0.94235 1.06553 0.95198 1.25758 0.94797 0.98865 0.98697 1.70047 1.38469 1.25346 1.24453 0.85837 0.79902 0.79813 0.78203 1.19236 1.20248 1.17314 1.18234 0.91707 0.92837 0.86710 1.20874 0.93886 1.10911 0.98878 1.21100 0.99899 0.97232 0.91938 1.21117 0.95113 1.07632 0.97785 1.21183 0.94446 0.96160 0.97524 1.20863 1.00665 1.11517 0.90875 0.86332 0.90945 0.86800 0.86207 0.85152 0.92751 0.94168 0.91403 0.89530 0.95211 0.95955 0.92293 0.88315 0.85282 0.84171 0.83400 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 10.26 71.24 0.73 -1.45 16 2 C 0.35 7.19 7.27 29.10 0.21 7.40 16 3 O -0.51 -16.06 16.71 -1.46 -0.02 -16.08 16 4 C -0.17 -3.05 5.64 29.85 0.17 -2.88 16 5 C -0.12 -3.44 4.83 30.59 0.15 -3.29 16 6 C 0.13 4.18 5.16 86.38 0.45 4.62 16 7 N -0.62 -26.18 2.59 -701.65 -1.82 -27.99 16 8 C 0.23 11.37 3.98 85.63 0.34 11.71 16 9 C -0.53 -30.65 9.94 25.60 0.25 -30.39 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 11 C 0.02 1.00 5.47 84.65 0.46 1.46 16 12 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 13 Si 0.94 43.85 27.47 68.60 1.88 45.74 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 17 C 0.21 8.50 6.55 38.21 0.25 8.75 16 18 C -0.22 -9.33 9.20 22.40 0.21 -9.12 16 19 C -0.08 -2.86 10.04 22.25 0.22 -2.63 16 20 C -0.20 -5.73 10.04 22.29 0.22 -5.51 16 21 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 22 C -0.22 -7.16 9.21 22.40 0.21 -6.95 16 23 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.93 8.12 -2.38 -0.02 0.91 16 25 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 29 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.09 2.44 6.20 -2.39 -0.01 2.43 16 32 H 0.03 1.42 7.13 -2.39 -0.02 1.40 16 33 H 0.02 1.11 5.63 -2.39 -0.01 1.09 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.10 4.58 6.15 -2.91 -0.02 4.56 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.13 3.74 6.14 -2.91 -0.02 3.72 16 Total: -1.00 -75.01 325.84 5.40 -69.61 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.96 Total: 17.27 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.10 Total: -30.17 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.52 Total: -86.36 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.02 Total: -16.08 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Total: -75.01 5.40 -69.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.179 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds