Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.46767 * 2 1 4 4 C 1.46893 * 111.00245 * 73.45105 * 3 2 1 5 5 C 1.50707 * 109.47065 * 285.64220 * 4 3 2 6 6 H 1.08000 * 119.99499 * 358.16288 * 5 4 3 7 7 C 1.37874 * 120.00067 * 178.15875 * 5 4 3 8 8 N 1.31514 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99815 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47351 * 60.00385 * 9 7 5 11 11 H 1.48502 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47421 * 300.00281 * 9 7 5 13 13 C 1.46901 * 110.99475 * 197.40282 * 3 2 1 14 14 H 1.09001 * 109.47012 * 186.04420 * 13 3 2 15 15 C 1.52998 * 109.47525 * 306.04357 * 13 3 2 16 16 C 1.50700 * 109.47283 * 66.04763 * 13 3 2 17 17 O 1.21248 * 119.99942 * 344.99523 * 16 13 3 18 18 C 1.47166 * 119.99930 * 164.99519 * 16 13 3 19 19 C 1.39855 * 120.17092 * 179.97438 * 18 16 13 20 20 C 1.37886 * 119.82726 * 180.02562 * 19 18 16 21 21 C 1.38408 * 120.16709 * 359.97438 * 20 19 18 22 22 C 1.38397 * 120.35401 * 0.27742 * 21 20 19 23 23 C 1.37894 * 120.17125 * 359.48593 * 22 21 20 24 24 H 1.09003 * 109.47342 * 48.37260 * 1 2 3 25 25 H 1.09001 * 109.46989 * 168.36332 * 1 2 3 26 26 H 1.08993 * 109.47554 * 288.36317 * 1 2 3 27 27 H 1.08995 * 109.47432 * 239.99634 * 2 1 3 28 28 H 1.09004 * 109.47205 * 119.99430 * 2 1 3 29 29 H 1.09004 * 109.47516 * 45.64071 * 4 3 2 30 30 H 1.08998 * 109.47801 * 165.64269 * 4 3 2 31 31 H 0.97007 * 120.00051 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47178 * 300.00607 * 15 13 3 33 33 H 1.09001 * 109.46924 * 60.00009 * 15 13 3 34 34 H 1.09002 * 109.47117 * 180.02562 * 15 13 3 35 35 H 1.07998 * 120.08436 * 0.02562 * 19 18 16 36 36 H 1.07991 * 119.91609 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.82074 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.91964 * 179.71871 * 22 21 20 39 39 H 1.08002 * 120.09126 * 180.23074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8267 2.0116 1.3145 5 6 0.3681 2.3388 1.5060 6 1 -0.3397 2.1319 0.7170 7 6 -0.0626 2.9023 2.6883 8 7 0.7995 3.1546 3.6489 9 14 -1.8704 3.3084 2.9253 10 1 -2.6766 2.0671 2.8048 11 1 -2.0721 3.9015 4.2717 12 1 -2.2996 4.2801 1.8875 13 6 3.4289 1.4451 -0.4102 14 1 3.7965 2.4652 -0.2989 15 6 4.2566 0.5060 0.4693 16 6 3.5511 1.0217 -1.8513 17 8 2.6312 0.4485 -2.3949 18 6 4.7870 1.3037 -2.5988 19 6 4.9045 0.9119 -3.9362 20 6 6.0659 1.1793 -4.6297 21 6 7.1135 1.8342 -4.0057 22 6 7.0069 2.2206 -2.6810 23 6 5.8502 1.9648 -1.9754 24 1 -0.3634 0.6827 -0.7682 25 1 -0.3633 -1.0066 -0.2073 26 1 -0.3634 0.3237 0.9752 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.1504 1.3239 2.0959 30 1 2.4149 2.9276 1.3703 31 1 0.4966 3.5514 4.4807 32 1 4.1682 0.8123 1.5117 33 1 3.8890 -0.5141 0.3580 34 1 5.3024 0.5509 0.1652 35 1 4.0878 0.4011 -4.4244 36 1 6.1581 0.8777 -5.6625 37 1 8.0208 2.0405 -4.5541 38 1 7.8304 2.7272 -2.1998 39 1 5.7670 2.2702 -0.9428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050148492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = 1.277264 kcal Electronic energy + Delta-G solvation = -19658.251980 eV Core-core repulsion = 16759.371217 eV Total energy + Delta-G solvation = -2898.880763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16175 -38.37949 -36.55564 -32.88816 -32.05504 -31.04357 -30.54508 -28.63313 -26.41627 -25.12672 -22.99980 -22.44707 -22.23633 -20.21509 -18.80303 -17.29040 -16.53713 -15.71613 -15.34032 -14.97855 -14.54333 -14.44587 -14.21141 -13.89188 -13.71599 -13.39812 -13.12777 -12.65910 -12.27728 -11.98288 -11.91237 -11.69909 -11.50609 -11.21671 -11.03388 -10.93638 -10.81887 -10.72614 -10.32924 -10.08146 -9.78532 -9.10432 -9.04053 -9.02346 -8.80263 -8.34455 -7.21955 -5.98486 -3.96431 0.69219 1.26260 2.59865 3.36824 3.40411 3.44132 3.77293 4.10558 4.47616 4.72197 4.80604 4.91903 4.97943 5.23536 5.30787 5.36322 5.44328 5.47695 5.58298 5.76980 5.85303 5.92928 6.09182 6.14213 6.23279 6.30062 6.31765 6.36675 6.45228 6.54300 6.74737 6.77717 7.04617 7.19909 7.38088 7.46180 7.85342 7.89386 8.14076 8.25295 8.58427 9.09861 9.65209 11.12343 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.004701 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.754921 B = 5955.051619 C = 6310.808919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.520 5.520 4 C 0.193 3.807 5 C -0.502 4.502 6 H 0.074 0.926 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.039 3.961 14 H 0.103 0.897 15 C -0.178 4.178 16 C 0.401 3.599 17 O -0.433 6.433 18 C -0.157 4.157 19 C -0.066 4.066 20 C -0.135 4.135 21 C -0.097 4.097 22 C -0.134 4.134 23 C -0.073 4.073 24 H 0.054 0.946 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.018 0.982 29 H -0.003 1.003 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.914 -3.914 -11.877 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 N -0.245 5.245 4 C 0.068 3.932 5 C -0.541 4.541 6 H 0.092 0.908 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.071 4.071 14 H 0.121 0.879 15 C -0.237 4.237 16 C 0.276 3.724 17 O -0.306 6.306 18 C -0.158 4.158 19 C -0.084 4.084 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.091 4.091 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.015 0.985 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.126 -3.877 -12.311 17.710 hybrid contribution -0.296 -0.028 0.895 0.943 sum 11.830 -3.905 -11.416 16.898 Atomic orbital electron populations 1.21971 0.95248 0.98578 1.04136 1.22080 0.96762 0.89187 0.98878 1.62270 1.11687 1.17408 1.33096 1.19807 0.97702 0.93448 0.82210 1.21370 0.93263 1.39272 1.00197 0.90803 1.24980 0.97672 0.96043 0.96061 1.69949 1.34016 1.44328 1.05900 0.86610 0.85341 0.78753 0.77036 1.20229 1.21485 1.20217 1.22004 0.92576 1.00577 0.91959 0.87947 1.22400 0.99464 1.00324 1.01491 1.22652 0.84666 0.75358 0.89693 1.90429 1.38897 1.30963 1.70293 1.20721 0.96702 1.02930 0.95482 1.21450 0.97568 0.96248 0.93178 1.21128 0.93690 1.00303 1.00219 1.21377 0.98522 0.96646 0.94964 1.21157 0.98114 1.01190 0.94743 1.21612 0.92214 0.95108 1.00215 0.92703 0.95253 0.89939 0.91253 0.96390 0.98488 0.95723 0.93026 0.90694 0.92220 0.92407 0.85013 0.85667 0.85865 0.85490 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.50 37.16 0.32 -2.70 16 2 C 0.06 1.23 4.05 -3.82 -0.02 1.22 16 3 N -0.52 -11.48 4.28 -229.47 -0.98 -12.47 16 4 C 0.19 4.93 4.11 -4.98 -0.02 4.91 16 5 C -0.50 -13.94 7.11 -34.44 -0.24 -14.18 16 6 H 0.07 2.04 5.58 -52.49 -0.29 1.75 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.04 0.70 1.90 -68.86 -0.13 0.57 16 14 H 0.10 1.74 7.02 -51.93 -0.36 1.38 16 15 C -0.18 -2.77 8.30 37.16 0.31 -2.46 16 16 C 0.40 6.77 6.20 -30.69 -0.19 6.58 16 17 O -0.43 -8.42 13.87 5.59 0.08 -8.34 16 18 C -0.16 -2.16 5.86 -105.06 -0.62 -2.78 16 19 C -0.07 -0.82 9.60 -39.11 -0.38 -1.20 16 20 C -0.14 -1.34 10.03 -39.65 -0.40 -1.74 16 21 C -0.10 -0.87 10.04 -39.46 -0.40 -1.27 16 22 C -0.13 -1.29 10.03 -39.65 -0.40 -1.68 16 23 C -0.07 -0.85 8.64 -39.10 -0.34 -1.19 16 24 H 0.05 1.20 7.78 -51.93 -0.40 0.80 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.94 5.78 -51.93 -0.30 1.64 16 27 H 0.07 1.41 5.32 -51.93 -0.28 1.13 16 28 H 0.02 0.38 6.98 -51.93 -0.36 0.02 16 29 H 0.00 -0.07 7.16 -51.93 -0.37 -0.44 16 30 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.27 7.13 -51.93 -0.37 0.90 16 33 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 34 H 0.06 0.72 6.64 -51.93 -0.34 0.38 16 35 H 0.13 1.63 7.65 -52.49 -0.40 1.23 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.44 5.94 -52.49 -0.31 1.12 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -31.10 310.21 -8.49 -39.59 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.38 Total: 0.13 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.59 Total: -14.53 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.25 Total: -38.24 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.10 -8.49 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.865 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds