Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.46767 * 2 1 4 4 C 1.46893 * 111.00245 * 73.45105 * 3 2 1 5 5 C 1.50707 * 109.47065 * 285.64220 * 4 3 2 6 6 H 1.08000 * 119.99499 * 358.16288 * 5 4 3 7 7 C 1.37874 * 120.00067 * 178.15875 * 5 4 3 8 8 N 1.31514 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99815 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47351 * 60.00385 * 9 7 5 11 11 H 1.48502 * 109.46942 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47421 * 300.00281 * 9 7 5 13 13 C 1.46901 * 110.99475 * 197.40282 * 3 2 1 14 14 H 1.09001 * 109.47012 * 186.04420 * 13 3 2 15 15 C 1.52998 * 109.47525 * 306.04357 * 13 3 2 16 16 C 1.50700 * 109.47283 * 66.04763 * 13 3 2 17 17 O 1.21248 * 119.99942 * 344.99523 * 16 13 3 18 18 C 1.47166 * 119.99930 * 164.99519 * 16 13 3 19 19 C 1.39855 * 120.17092 * 179.97438 * 18 16 13 20 20 C 1.37886 * 119.82726 * 180.02562 * 19 18 16 21 21 C 1.38408 * 120.16709 * 359.97438 * 20 19 18 22 22 C 1.38397 * 120.35401 * 0.27742 * 21 20 19 23 23 C 1.37894 * 120.17125 * 359.48593 * 22 21 20 24 24 H 1.09003 * 109.47342 * 48.37260 * 1 2 3 25 25 H 1.09001 * 109.46989 * 168.36332 * 1 2 3 26 26 H 1.08993 * 109.47554 * 288.36317 * 1 2 3 27 27 H 1.08995 * 109.47432 * 239.99634 * 2 1 3 28 28 H 1.09004 * 109.47205 * 119.99430 * 2 1 3 29 29 H 1.09004 * 109.47516 * 45.64071 * 4 3 2 30 30 H 1.08998 * 109.47801 * 165.64269 * 4 3 2 31 31 H 0.97007 * 120.00051 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47178 * 300.00607 * 15 13 3 33 33 H 1.09001 * 109.46924 * 60.00009 * 15 13 3 34 34 H 1.09002 * 109.47117 * 180.02562 * 15 13 3 35 35 H 1.07998 * 120.08436 * 0.02562 * 19 18 16 36 36 H 1.07991 * 119.91609 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.82074 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.91964 * 179.71871 * 22 21 20 39 39 H 1.08002 * 120.09126 * 180.23074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8267 2.0116 1.3145 5 6 0.3681 2.3388 1.5060 6 1 -0.3397 2.1319 0.7170 7 6 -0.0626 2.9023 2.6883 8 7 0.7995 3.1546 3.6489 9 14 -1.8704 3.3084 2.9253 10 1 -2.6766 2.0671 2.8048 11 1 -2.0721 3.9015 4.2717 12 1 -2.2996 4.2801 1.8875 13 6 3.4289 1.4451 -0.4102 14 1 3.7965 2.4652 -0.2989 15 6 4.2566 0.5060 0.4693 16 6 3.5511 1.0217 -1.8513 17 8 2.6312 0.4485 -2.3949 18 6 4.7870 1.3037 -2.5988 19 6 4.9045 0.9119 -3.9362 20 6 6.0659 1.1793 -4.6297 21 6 7.1135 1.8342 -4.0057 22 6 7.0069 2.2206 -2.6810 23 6 5.8502 1.9648 -1.9754 24 1 -0.3634 0.6827 -0.7682 25 1 -0.3633 -1.0066 -0.2073 26 1 -0.3634 0.3237 0.9752 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.1504 1.3239 2.0959 30 1 2.4149 2.9276 1.3703 31 1 0.4966 3.5514 4.4807 32 1 4.1682 0.8123 1.5117 33 1 3.8890 -0.5141 0.3580 34 1 5.3024 0.5509 0.1652 35 1 4.0878 0.4011 -4.4244 36 1 6.1581 0.8777 -5.6625 37 1 8.0208 2.0405 -4.5541 38 1 7.8304 2.7272 -2.1998 39 1 5.7670 2.2702 -0.9428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050148492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -17.399463 kcal Electronic energy + Delta-G solvation = -19659.061864 eV Core-core repulsion = 16759.371217 eV Total energy + Delta-G solvation = -2899.690647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40888 -39.45106 -38.14156 -34.82339 -33.54768 -31.89184 -31.74451 -30.43849 -28.28805 -26.38516 -24.43398 -24.00277 -23.29553 -21.69298 -20.21079 -18.66054 -18.22215 -16.88185 -16.69002 -16.45981 -16.12210 -15.90294 -15.59125 -15.28828 -14.82541 -14.73788 -14.32871 -14.21429 -13.73741 -13.43229 -13.37177 -13.15742 -12.93993 -12.79292 -12.69659 -12.54409 -12.41798 -12.12732 -11.99926 -11.89632 -11.52094 -11.08615 -10.52505 -10.29875 -9.91738 -9.89600 -8.99793 -8.14868 -6.19977 -0.28502 0.45580 1.41890 1.44088 1.46692 1.51742 2.42242 2.84108 2.89893 3.17237 3.36973 3.87365 4.05693 4.07054 4.14161 4.16151 4.30802 4.36729 4.51127 4.55772 4.58961 4.65407 4.72527 4.83543 4.94428 5.02513 5.08589 5.12203 5.15200 5.25032 5.38665 5.42335 5.49559 5.52719 5.62309 5.75105 5.99295 6.12112 6.38098 6.53116 6.68933 6.92776 7.46074 8.95547 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.004701 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.754921 B = 5955.051619 C = 6310.808919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.063 3.937 3 N -0.535 5.535 4 C 0.212 3.788 5 C -0.515 4.515 6 H 0.071 0.929 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.032 3.968 14 H 0.107 0.893 15 C -0.166 4.166 16 C 0.406 3.594 17 O -0.470 6.470 18 C -0.182 4.182 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.133 4.133 23 C -0.080 4.080 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.013 0.987 29 H -0.027 1.027 30 H 0.005 0.995 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.548 -3.791 -13.389 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 N -0.259 5.259 4 C 0.086 3.914 5 C -0.554 4.554 6 H 0.089 0.911 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.078 4.078 14 H 0.125 0.875 15 C -0.225 4.225 16 C 0.285 3.715 17 O -0.346 6.346 18 C -0.184 4.184 19 C -0.098 4.098 20 C -0.152 4.152 21 C -0.102 4.102 22 C -0.150 4.150 23 C -0.098 4.098 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.032 0.968 29 H -0.009 1.009 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.778 -3.757 -13.834 19.883 hybrid contribution -0.661 -0.055 1.276 1.438 sum 13.117 -3.813 -12.558 18.555 Atomic orbital electron populations 1.21865 0.95409 0.99887 1.02126 1.22063 0.96637 0.88736 0.99037 1.62153 1.15015 1.17971 1.30735 1.19431 0.96368 0.92193 0.83413 1.21675 0.94304 1.39099 1.00287 0.91091 1.25782 1.01968 0.95889 0.95763 1.70065 1.35971 1.45142 1.06359 0.85602 0.80210 0.78739 0.77098 1.19417 1.20908 1.19700 1.22155 0.90507 1.01603 0.93528 0.87527 1.22275 1.01183 0.99171 0.99885 1.22753 0.85574 0.74186 0.88977 1.90402 1.40435 1.33072 1.70692 1.20462 0.95979 1.05777 0.96144 1.21528 0.98636 0.96795 0.92884 1.21454 0.92752 0.99661 1.01352 1.21854 0.99219 0.94400 0.94766 1.21533 0.97910 1.00495 0.95101 1.21746 0.92449 0.94892 1.00680 0.93870 0.92409 0.92440 0.90196 0.96842 1.00885 0.97691 0.92915 0.92441 0.92693 0.88905 0.85982 0.83027 0.82267 0.82598 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.50 71.98 0.61 -5.23 16 2 C 0.06 2.70 4.05 86.30 0.35 3.05 16 3 N -0.53 -24.34 4.28 -879.92 -3.77 -28.11 16 4 C 0.21 11.26 4.11 85.56 0.35 11.61 16 5 C -0.52 -29.34 7.11 25.60 0.18 -29.16 16 6 H 0.07 4.01 5.58 -2.91 -0.02 4.00 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 9 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.03 1.16 1.90 44.17 0.08 1.24 16 14 H 0.11 3.72 7.02 -2.39 -0.02 3.71 16 15 C -0.17 -5.22 8.30 71.98 0.60 -4.62 16 16 C 0.41 13.89 6.20 28.03 0.17 14.07 16 17 O -0.47 -18.72 13.87 -2.93 -0.04 -18.76 16 18 C -0.18 -4.89 5.86 -20.15 -0.12 -5.01 16 19 C -0.08 -1.90 9.60 22.58 0.22 -1.68 16 20 C -0.13 -2.24 10.03 22.23 0.22 -2.02 16 21 C -0.08 -1.15 10.04 22.35 0.22 -0.93 16 22 C -0.13 -2.05 10.03 22.23 0.22 -1.83 16 23 C -0.08 -1.69 8.64 22.58 0.20 -1.49 16 24 H 0.04 1.92 7.78 -2.39 -0.02 1.90 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 2.75 5.78 -2.39 -0.01 2.74 16 27 H 0.08 3.30 5.32 -2.39 -0.01 3.29 16 28 H 0.01 0.58 6.98 -2.38 -0.02 0.57 16 29 H -0.03 -1.51 7.16 -2.38 -0.02 -1.53 16 30 H 0.01 0.28 7.76 -2.39 -0.02 0.26 16 31 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 32 H 0.06 2.00 7.13 -2.38 -0.02 1.98 16 33 H 0.05 1.76 6.72 -2.39 -0.02 1.74 16 34 H 0.09 2.22 6.64 -2.39 -0.02 2.20 16 35 H 0.12 3.04 7.65 -2.91 -0.02 3.02 16 36 H 0.15 1.68 8.06 -2.92 -0.02 1.65 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.14 2.73 5.94 -2.91 -0.02 2.72 16 Total: -1.00 -68.82 310.21 3.32 -65.49 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.04 Total: 11.40 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.78 Total: -21.33 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.48 Total: -83.86 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.76 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.82 3.32 -65.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.094 kcal (2) G-P(sol) polarization free energy of solvation -68.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds