Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46630 * 2 1 4 4 C 1.46900 * 110.99813 * 294.60928 * 3 2 1 5 5 C 1.50698 * 109.47222 * 295.07959 * 4 3 2 6 6 H 1.08000 * 120.00245 * 355.02051 * 5 4 3 7 7 C 1.37888 * 119.99891 * 175.02179 * 5 4 3 8 8 N 1.31512 * 119.99884 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46799 * 90.00283 * 9 7 5 11 11 H 1.48501 * 109.46818 * 209.99837 * 9 7 5 12 12 H 1.48496 * 109.47474 * 330.00340 * 9 7 5 13 13 C 1.46893 * 111.00160 * 58.56805 * 3 2 1 14 14 H 1.08998 * 109.47389 * 296.04025 * 13 3 2 15 15 C 1.53003 * 109.47091 * 176.04144 * 13 3 2 16 16 C 1.50700 * 109.47280 * 56.04586 * 13 3 2 17 17 O 1.21251 * 119.99929 * 19.99383 * 16 13 3 18 18 C 1.47168 * 119.99837 * 199.99956 * 16 13 3 19 19 C 1.39853 * 120.17006 * 179.97438 * 18 16 13 20 20 C 1.37885 * 119.82352 * 179.74802 * 19 18 16 21 21 C 1.38403 * 120.17460 * 0.25627 * 20 19 18 22 22 C 1.38407 * 120.34700 * 359.97438 * 21 20 19 23 23 C 1.37889 * 120.17233 * 0.02562 * 22 21 20 24 24 H 1.08988 * 109.47244 * 302.06624 * 1 2 3 25 25 H 1.08997 * 109.46793 * 62.06994 * 1 2 3 26 26 H 1.09002 * 109.46891 * 182.06794 * 1 2 3 27 27 H 1.08992 * 109.46936 * 239.99835 * 2 1 3 28 28 H 1.08998 * 109.46975 * 119.99618 * 2 1 3 29 29 H 1.08999 * 109.47177 * 55.08469 * 4 3 2 30 30 H 1.09006 * 109.46610 * 175.08467 * 4 3 2 31 31 H 0.96994 * 120.00405 * 179.97438 * 8 7 5 32 32 H 1.09012 * 109.46855 * 60.00102 * 15 13 3 33 33 H 1.09001 * 109.47399 * 179.97438 * 15 13 3 34 34 H 1.08996 * 109.47526 * 300.00602 * 15 13 3 35 35 H 1.08002 * 120.08815 * 0.02562 * 19 18 16 36 36 H 1.08005 * 119.91499 * 180.27165 * 20 19 18 37 37 H 1.08000 * 119.83052 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.91579 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.08465 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6566 2.0716 -1.2469 5 6 2.3634 1.4164 -2.4053 6 1 3.0782 0.6271 -2.2253 7 6 2.0976 1.8247 -3.6953 8 7 1.2276 2.7862 -3.9145 9 14 2.9743 1.0130 -5.1312 10 1 2.1813 -0.1514 -5.6009 11 1 3.1207 1.9913 -6.2388 12 1 4.3175 0.5537 -4.6955 13 6 1.5208 2.1197 1.1701 14 1 0.4348 2.1950 1.1160 15 6 2.1290 3.5235 1.1882 16 6 1.9116 1.3868 2.4276 17 8 2.8212 0.5853 2.4043 18 6 1.1891 1.6437 3.6837 19 6 1.5485 0.9652 4.8526 20 6 0.8701 1.2153 6.0267 21 6 -0.1673 2.1311 6.0493 22 6 -0.5320 2.8031 4.8956 23 6 0.1366 2.5641 3.7135 24 1 -0.3633 0.5455 0.8708 25 1 -0.3633 0.4813 -0.9080 26 1 -0.3633 -1.0270 0.0371 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5787 2.0083 -1.3960 30 1 1.9540 3.1185 -1.1849 31 1 1.0408 3.0738 -4.8219 32 1 1.8464 4.0537 0.2786 33 1 1.7586 4.0689 2.0562 34 1 3.2151 3.4483 1.2422 35 1 2.3580 0.2505 4.8367 36 1 1.1493 0.6953 6.9313 37 1 -0.6946 2.3230 6.9721 38 1 -1.3424 3.5166 4.9212 39 1 -0.1489 3.0896 2.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050148494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = -1.638317 kcal Electronic energy + Delta-G solvation = -19749.282508 eV Core-core repulsion = 16850.275316 eV Total energy + Delta-G solvation = -2899.007192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17514 -38.37360 -36.59615 -32.76929 -32.15354 -31.05899 -30.75028 -28.67874 -26.32222 -24.93709 -23.07820 -22.78096 -22.31056 -20.24131 -18.51206 -17.36737 -16.31010 -15.75985 -15.38543 -15.12825 -15.00665 -14.56088 -14.19814 -13.85471 -13.62943 -13.43670 -12.95083 -12.53571 -12.34069 -12.11967 -11.92697 -11.73317 -11.69500 -11.23488 -11.20089 -10.99895 -10.78460 -10.71025 -10.46791 -9.98481 -9.89970 -9.19792 -9.12079 -9.04299 -8.96836 -8.39733 -7.15357 -6.01075 -4.00844 0.67894 1.24778 2.58996 3.33750 3.39950 3.45419 3.76103 4.10606 4.46579 4.70972 4.79269 4.91001 4.91489 5.22865 5.29632 5.34759 5.47734 5.59239 5.64388 5.75847 5.84181 5.86561 5.97664 6.02362 6.14990 6.22756 6.28165 6.30672 6.35880 6.48325 6.62606 6.72518 6.76198 6.96792 7.30712 7.42707 7.79878 7.87002 8.12704 8.22315 8.57414 9.07370 9.62865 11.09760 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038918 B = 0.004636 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.290954 B = 6037.618824 C = 6220.914244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 N -0.517 5.517 4 C 0.186 3.814 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.039 3.961 14 H 0.059 0.941 15 C -0.139 4.139 16 C 0.397 3.603 17 O -0.430 6.430 18 C -0.158 4.158 19 C -0.067 4.067 20 C -0.135 4.135 21 C -0.097 4.097 22 C -0.134 4.134 23 C -0.074 4.074 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.001 0.999 30 H 0.034 0.966 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 0.141 17.915 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.077 4.077 3 N -0.241 5.241 4 C 0.062 3.938 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.071 4.071 14 H 0.076 0.924 15 C -0.197 4.197 16 C 0.272 3.728 17 O -0.302 6.302 18 C -0.160 4.160 19 C -0.085 4.085 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.092 4.092 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.634 -0.189 17.766 18.135 hybrid contribution -0.687 -0.276 -0.890 1.158 sum -4.322 -0.465 16.876 17.427 Atomic orbital electron populations 1.22419 0.99698 1.00975 1.01699 1.22141 0.91617 0.91370 1.02542 1.62279 1.58391 1.01528 1.01943 1.19882 0.94994 0.94564 0.84399 1.21158 1.23396 1.19566 0.90069 0.91848 1.24957 0.95406 0.95289 0.98877 1.69946 1.34325 1.28788 1.20941 0.86525 0.80187 0.78999 0.81907 1.20800 1.21317 1.19749 1.21900 0.98424 0.95433 0.91331 0.92370 1.21802 1.01990 0.93520 1.02360 1.22644 0.81384 0.80139 0.88595 1.90462 1.24895 1.28088 1.86775 1.20756 0.99214 1.00214 0.95793 1.21452 0.98245 0.97206 0.91569 1.21131 0.96886 0.99242 0.98040 1.21380 0.96393 0.95433 0.98294 1.21160 1.00595 1.00675 0.92741 1.21604 0.93534 0.95435 0.98621 0.94110 0.91358 0.93311 0.89646 0.91962 0.98139 0.94856 0.93009 0.90259 0.92799 0.91566 0.84999 0.85635 0.85835 0.85485 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 9.23 37.16 0.34 -3.18 16 2 C 0.05 1.08 5.42 -3.82 -0.02 1.06 16 3 N -0.52 -11.44 4.32 -229.48 -0.99 -12.44 16 4 C 0.19 4.74 4.34 -4.98 -0.02 4.72 16 5 C -0.50 -14.13 8.32 -34.44 -0.29 -14.41 16 6 H 0.06 1.80 7.25 -52.49 -0.38 1.42 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.04 0.70 1.12 -68.87 -0.08 0.63 16 14 H 0.06 1.00 5.34 -51.93 -0.28 0.73 16 15 C -0.14 -2.31 8.85 37.16 0.33 -1.98 16 16 C 0.40 6.80 5.57 -30.68 -0.17 6.63 16 17 O -0.43 -8.52 14.66 5.58 0.08 -8.44 16 18 C -0.16 -2.21 5.87 -105.06 -0.62 -2.83 16 19 C -0.07 -0.83 9.60 -39.11 -0.38 -1.21 16 20 C -0.14 -1.34 10.03 -39.65 -0.40 -1.73 16 21 C -0.10 -0.87 10.04 -39.46 -0.40 -1.27 16 22 C -0.13 -1.29 10.03 -39.65 -0.40 -1.69 16 23 C -0.07 -0.87 8.87 -39.11 -0.35 -1.22 16 24 H 0.04 0.69 6.35 -51.94 -0.33 0.36 16 25 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.93 6.75 -51.93 -0.35 1.58 16 28 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 29 H 0.00 0.02 6.28 -51.93 -0.33 -0.30 16 30 H 0.03 0.89 5.87 -51.93 -0.30 0.58 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 1.41 6.22 -51.92 -0.32 1.08 16 33 H 0.05 0.71 7.30 -51.93 -0.38 0.33 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.13 1.64 7.65 -52.49 -0.40 1.24 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 1.48 6.18 -52.49 -0.32 1.15 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -31.21 312.20 -8.31 -39.52 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.29 Total: 0.54 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.53 Total: -15.00 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.26 Total: -38.08 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.21 -8.31 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.882 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds