Wall clock time and date at job start Mon Mar 30 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46630 * 2 1 4 4 C 1.46900 * 110.99813 * 294.60928 * 3 2 1 5 5 C 1.50698 * 109.47222 * 295.07959 * 4 3 2 6 6 H 1.08000 * 120.00245 * 355.02051 * 5 4 3 7 7 C 1.37888 * 119.99891 * 175.02179 * 5 4 3 8 8 N 1.31512 * 119.99884 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46799 * 90.00283 * 9 7 5 11 11 H 1.48501 * 109.46818 * 209.99837 * 9 7 5 12 12 H 1.48496 * 109.47474 * 330.00340 * 9 7 5 13 13 C 1.46893 * 111.00160 * 58.56805 * 3 2 1 14 14 H 1.08998 * 109.47389 * 296.04025 * 13 3 2 15 15 C 1.53003 * 109.47091 * 176.04144 * 13 3 2 16 16 C 1.50700 * 109.47280 * 56.04586 * 13 3 2 17 17 O 1.21251 * 119.99929 * 19.99383 * 16 13 3 18 18 C 1.47168 * 119.99837 * 199.99956 * 16 13 3 19 19 C 1.39853 * 120.17006 * 179.97438 * 18 16 13 20 20 C 1.37885 * 119.82352 * 179.74802 * 19 18 16 21 21 C 1.38403 * 120.17460 * 0.25627 * 20 19 18 22 22 C 1.38407 * 120.34700 * 359.97438 * 21 20 19 23 23 C 1.37889 * 120.17233 * 0.02562 * 22 21 20 24 24 H 1.08988 * 109.47244 * 302.06624 * 1 2 3 25 25 H 1.08997 * 109.46793 * 62.06994 * 1 2 3 26 26 H 1.09002 * 109.46891 * 182.06794 * 1 2 3 27 27 H 1.08992 * 109.46936 * 239.99835 * 2 1 3 28 28 H 1.08998 * 109.46975 * 119.99618 * 2 1 3 29 29 H 1.08999 * 109.47177 * 55.08469 * 4 3 2 30 30 H 1.09006 * 109.46610 * 175.08467 * 4 3 2 31 31 H 0.96994 * 120.00405 * 179.97438 * 8 7 5 32 32 H 1.09012 * 109.46855 * 60.00102 * 15 13 3 33 33 H 1.09001 * 109.47399 * 179.97438 * 15 13 3 34 34 H 1.08996 * 109.47526 * 300.00602 * 15 13 3 35 35 H 1.08002 * 120.08815 * 0.02562 * 19 18 16 36 36 H 1.08005 * 119.91499 * 180.27165 * 20 19 18 37 37 H 1.08000 * 119.83052 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.91579 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.08465 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6566 2.0716 -1.2469 5 6 2.3634 1.4164 -2.4053 6 1 3.0782 0.6271 -2.2253 7 6 2.0976 1.8247 -3.6953 8 7 1.2276 2.7862 -3.9145 9 14 2.9743 1.0130 -5.1312 10 1 2.1813 -0.1514 -5.6009 11 1 3.1207 1.9913 -6.2388 12 1 4.3175 0.5537 -4.6955 13 6 1.5208 2.1197 1.1701 14 1 0.4348 2.1950 1.1160 15 6 2.1290 3.5235 1.1882 16 6 1.9116 1.3868 2.4276 17 8 2.8212 0.5853 2.4043 18 6 1.1891 1.6437 3.6837 19 6 1.5485 0.9652 4.8526 20 6 0.8701 1.2153 6.0267 21 6 -0.1673 2.1311 6.0493 22 6 -0.5320 2.8031 4.8956 23 6 0.1366 2.5641 3.7135 24 1 -0.3633 0.5455 0.8708 25 1 -0.3633 0.4813 -0.9080 26 1 -0.3633 -1.0270 0.0371 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5787 2.0083 -1.3960 30 1 1.9540 3.1185 -1.1849 31 1 1.0408 3.0738 -4.8219 32 1 1.8464 4.0537 0.2786 33 1 1.7586 4.0689 2.0562 34 1 3.2151 3.4483 1.2422 35 1 2.3580 0.2505 4.8367 36 1 1.1493 0.6953 6.9313 37 1 -0.6946 2.3230 6.9721 38 1 -1.3424 3.5166 4.9212 39 1 -0.1489 3.0896 2.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050148494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:04 Heat of formation + Delta-G solvation = -20.532891 kcal Electronic energy + Delta-G solvation = -19750.101838 eV Core-core repulsion = 16850.275316 eV Total energy + Delta-G solvation = -2899.826523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43488 -39.44775 -38.18285 -34.79327 -33.58390 -31.95942 -31.84182 -30.46299 -28.13284 -26.28934 -24.81801 -24.00776 -23.32682 -21.68808 -19.93015 -18.53011 -18.32033 -16.91966 -16.81674 -16.63628 -16.39029 -16.17036 -15.42619 -15.12521 -14.88481 -14.60644 -14.31096 -14.20294 -13.75452 -13.55905 -13.43132 -13.26121 -12.98705 -12.69750 -12.63431 -12.61631 -12.40184 -12.28720 -11.98705 -11.96398 -11.54945 -11.25335 -10.59788 -10.40361 -9.93240 -9.91590 -8.92140 -8.18665 -6.26217 -0.30254 0.44253 1.39939 1.40745 1.44962 1.52649 2.40360 2.84534 2.87625 3.14044 3.32964 3.86071 4.04421 4.09671 4.12657 4.19300 4.22800 4.31902 4.42787 4.50121 4.54889 4.58124 4.64224 4.84954 4.90550 4.92946 5.01628 5.09975 5.19303 5.21271 5.36192 5.40858 5.44765 5.48958 5.51661 5.68029 5.98039 6.08802 6.31909 6.50317 6.71711 6.89110 7.42072 8.91732 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038918 B = 0.004636 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.290954 B = 6037.618824 C = 6220.914244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.204 3.796 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.034 3.966 14 H 0.071 0.929 15 C -0.133 4.133 16 C 0.404 3.596 17 O -0.470 6.470 18 C -0.184 4.184 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.132 4.132 23 C -0.080 4.080 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.068 0.932 29 H -0.018 1.018 30 H 0.018 0.982 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 0.349 20.061 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.074 4.074 3 N -0.259 5.259 4 C 0.079 3.921 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.196 1.196 13 C -0.075 4.075 14 H 0.088 0.912 15 C -0.190 4.190 16 C 0.283 3.717 17 O -0.346 6.346 18 C -0.185 4.185 19 C -0.098 4.098 20 C -0.151 4.151 21 C -0.101 4.101 22 C -0.149 4.149 23 C -0.098 4.098 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.086 0.914 29 H -0.001 1.001 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.926 0.024 19.928 20.528 hybrid contribution -0.344 -0.306 -1.410 1.484 sum -5.270 -0.282 18.518 19.255 Atomic orbital electron populations 1.22275 0.97763 1.02427 1.01079 1.22057 0.93218 0.90639 1.01501 1.62136 1.59459 1.02195 1.02065 1.19510 0.93300 0.93779 0.85560 1.21420 1.23559 1.19589 0.91519 0.92987 1.25748 0.96035 0.95764 1.01426 1.70046 1.35371 1.29826 1.21717 0.85508 0.78997 0.78283 0.78596 1.19910 1.20465 1.19587 1.22056 0.99091 0.95904 0.90487 0.91184 1.21752 1.01049 0.92984 1.03234 1.22760 0.80780 0.78855 0.89346 1.90444 1.26816 1.29966 1.87384 1.20480 1.00757 1.02755 0.94518 1.21526 0.98708 0.97323 0.92283 1.21460 0.96518 0.99296 0.97841 1.21861 0.95264 0.93567 0.99445 1.21536 1.00672 1.00786 0.91937 1.21725 0.93150 0.94996 0.99940 0.92428 0.93895 0.91003 0.92154 0.91386 1.00083 0.96388 0.92705 0.91893 0.89017 0.93012 0.86034 0.82966 0.82185 0.82557 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.62 9.23 71.99 0.66 -5.95 16 2 C 0.05 2.33 5.42 86.31 0.47 2.80 16 3 N -0.53 -24.54 4.32 -879.93 -3.81 -28.35 16 4 C 0.20 10.84 4.34 85.56 0.37 11.21 16 5 C -0.52 -30.34 8.32 25.60 0.21 -30.13 16 6 H 0.05 3.07 7.25 -2.91 -0.02 3.05 16 7 C 0.01 0.49 5.46 84.66 0.46 0.95 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.03 1.25 1.12 44.17 0.05 1.30 16 14 H 0.07 2.41 5.34 -2.39 -0.01 2.40 16 15 C -0.13 -4.46 8.85 71.98 0.64 -3.82 16 16 C 0.40 13.98 5.57 28.03 0.16 14.14 16 17 O -0.47 -19.28 14.66 -2.94 -0.04 -19.32 16 18 C -0.18 -4.94 5.87 -20.15 -0.12 -5.06 16 19 C -0.08 -1.90 9.60 22.58 0.22 -1.68 16 20 C -0.13 -2.19 10.03 22.23 0.22 -1.97 16 21 C -0.08 -1.11 10.04 22.35 0.22 -0.89 16 22 C -0.13 -2.01 10.03 22.23 0.22 -1.78 16 23 C -0.08 -1.70 8.87 22.58 0.20 -1.50 16 24 H 0.06 1.93 6.35 -2.39 -0.02 1.91 16 25 H 0.04 1.82 6.53 -2.39 -0.02 1.80 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.06 2.86 6.75 -2.39 -0.02 2.84 16 28 H 0.07 2.86 5.82 -2.39 -0.01 2.85 16 29 H -0.02 -1.04 6.28 -2.39 -0.01 -1.05 16 30 H 0.02 1.01 5.87 -2.38 -0.01 0.99 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.06 2.31 6.22 -2.38 -0.01 2.29 16 33 H 0.09 2.32 7.30 -2.39 -0.02 2.31 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.12 3.04 7.65 -2.91 -0.02 3.02 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.14 2.73 6.18 -2.91 -0.02 2.71 16 Total: -1.00 -69.67 312.20 3.50 -66.17 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.04 Total: 11.71 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.99 Total: -22.38 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.52 Total: -83.49 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.04 Total: -19.32 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.67 3.50 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.637 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds