Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47248 * 2 1 4 4 C 1.46898 * 111.00043 * 297.50782 * 3 2 1 5 5 C 1.50700 * 109.47150 * 292.34931 * 4 3 2 6 6 H 1.07994 * 120.00143 * 354.95396 * 5 4 3 7 7 C 1.37879 * 119.99919 * 174.95696 * 5 4 3 8 8 N 1.31520 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47535 * 60.00118 * 9 7 5 11 11 H 1.48503 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47024 * 299.99523 * 9 7 5 13 13 C 1.46897 * 110.99908 * 61.46228 * 3 2 1 14 14 C 1.50702 * 109.47367 * 66.04748 * 13 3 2 15 15 O 1.21257 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47165 * 120.00238 * 179.97438 * 14 13 3 17 17 C 1.39852 * 120.17091 * 179.97438 * 16 14 13 18 18 C 1.37886 * 119.82600 * 180.30267 * 17 16 14 19 19 C 1.38409 * 120.16671 * 359.44268 * 18 17 16 20 20 C 1.50704 * 119.82368 * 180.28626 * 19 18 17 21 21 C 1.38395 * 120.35133 * 0.55912 * 19 18 17 22 22 C 1.37892 * 120.17328 * 359.72585 * 21 19 18 23 23 H 1.09001 * 109.47370 * 299.09058 * 1 2 3 24 24 H 1.09003 * 109.46910 * 59.09150 * 1 2 3 25 25 H 1.09000 * 109.47453 * 179.08378 * 1 2 3 26 26 H 1.09001 * 109.46993 * 239.99315 * 2 1 3 27 27 H 1.09000 * 109.46355 * 120.00121 * 2 1 3 28 28 H 1.09003 * 109.47258 * 52.35020 * 4 3 2 29 29 H 1.08997 * 109.46959 * 172.34639 * 4 3 2 30 30 H 0.96991 * 119.99862 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47464 * 306.04580 * 13 3 2 32 32 H 1.09004 * 109.47278 * 186.04416 * 13 3 2 33 33 H 1.07999 * 120.08896 * 0.02681 * 17 16 14 34 34 H 1.07997 * 119.91846 * 179.72319 * 18 17 16 35 35 H 1.09011 * 109.46725 * 270.27721 * 20 19 18 36 36 H 1.09003 * 109.47042 * 30.26996 * 20 19 18 37 37 H 1.08995 * 109.47564 * 150.27948 * 20 19 18 38 38 H 1.07998 * 119.91870 * 179.69652 * 21 19 18 39 39 H 1.08003 * 120.08764 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5980 2.0924 -1.2164 5 6 2.3002 1.5001 -2.4110 6 1 3.0507 0.7360 -2.2722 7 6 1.9846 1.9337 -3.6812 8 7 1.0703 2.8640 -3.8503 9 14 2.8545 1.1990 -5.1620 10 1 2.6019 -0.2635 -5.2092 11 1 2.3390 1.8312 -6.4029 12 1 4.3147 1.4460 -5.0511 13 6 1.5775 2.0996 1.2048 14 6 2.2291 1.4890 2.4187 15 8 2.9867 0.5507 2.2927 16 6 1.9459 2.0315 3.7571 17 6 2.5482 1.4672 4.8861 18 6 2.2730 1.9771 6.1373 19 6 1.4121 3.0520 6.2764 20 6 1.1218 3.6072 7.6470 21 6 0.8121 3.6159 5.1641 22 6 1.0727 3.1136 3.9066 23 1 -0.3634 0.4996 0.8980 24 1 -0.3633 0.5279 -0.8818 25 1 -0.3634 -1.0275 -0.0164 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 0.5200 1.9901 -1.3410 29 1 1.8552 3.1481 -1.1302 30 1 0.8481 3.1687 -4.7438 31 1 0.4942 2.0220 1.2962 32 1 1.8615 3.1493 1.1294 33 1 3.2237 0.6314 4.7787 34 1 2.7338 1.5397 7.0106 35 1 0.2620 3.0905 8.0737 36 1 1.9897 3.4603 8.2899 37 1 0.9035 4.6722 7.5689 38 1 0.1377 4.4513 5.2811 39 1 0.6034 3.5545 3.0395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050148514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = -9.486335 kcal Electronic energy + Delta-G solvation = -19099.164416 eV Core-core repulsion = 16199.816908 eV Total energy + Delta-G solvation = -2899.347508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02669 -38.47754 -36.42360 -33.09021 -32.55238 -31.21438 -29.80479 -28.64179 -27.23339 -25.10562 -23.12084 -22.71240 -22.26545 -20.12306 -18.92101 -16.91520 -16.17213 -15.56791 -15.43208 -15.30693 -14.81577 -14.42452 -14.16692 -14.01707 -13.73239 -13.61882 -13.39379 -12.70349 -12.50743 -12.28392 -12.02989 -11.79383 -11.70642 -11.45145 -11.14345 -11.11416 -10.84302 -10.76010 -10.52231 -9.99584 -9.94019 -9.36095 -9.10913 -8.96742 -8.79062 -8.40217 -7.15367 -6.00288 -4.00595 0.68459 1.27171 2.59990 3.36688 3.39864 3.43985 3.74786 4.14792 4.47610 4.61868 4.64611 4.85053 5.03396 5.09443 5.25485 5.29761 5.35256 5.45890 5.50248 5.61498 5.73787 5.78875 5.85571 5.90727 5.95804 6.07859 6.18361 6.22831 6.36448 6.37244 6.50372 6.72114 6.78796 6.99617 7.29253 7.43484 7.82618 7.90671 8.12264 8.22326 8.57024 9.07726 9.63359 11.10464 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039803 B = 0.003886 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.293128 B = 7203.328158 C = 7419.098015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 N -0.523 5.523 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.006 3.994 14 C 0.393 3.607 15 O -0.432 6.432 16 C -0.164 4.164 17 C -0.061 4.061 18 C -0.136 4.136 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.069 4.069 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.005 0.995 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 1.187 20.411 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.073 4.073 3 N -0.246 5.246 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.123 4.123 14 C 0.268 3.732 15 O -0.306 6.306 16 C -0.166 4.166 17 C -0.080 4.080 18 C -0.154 4.154 19 C -0.065 4.065 20 C -0.174 4.174 21 C -0.153 4.153 22 C -0.087 4.087 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.676 0.784 20.180 20.265 hybrid contribution -0.606 -0.129 -0.892 1.086 sum -2.282 0.655 19.288 19.433 Atomic orbital electron populations 1.22428 0.99798 1.01130 1.01578 1.22108 0.91512 0.91196 1.02529 1.62202 1.59107 1.01968 1.01339 1.19832 0.94924 0.93646 0.85292 1.21115 1.21290 1.21770 0.90034 0.91857 1.24970 0.95335 0.95285 0.99000 1.69943 1.32023 1.29638 1.22493 0.86562 0.79989 0.79262 0.81618 1.20277 1.21425 1.20170 1.22404 0.98399 0.99999 0.91466 1.22674 0.79337 0.82314 0.88842 1.90456 1.28262 1.23729 1.88134 1.20737 1.01198 0.99163 0.95493 1.21424 0.96795 0.98265 0.91481 1.20998 0.99761 0.97291 0.97338 1.20164 0.95515 0.95064 0.95758 1.20857 1.02279 1.01141 0.93153 1.21017 1.01160 1.01083 0.92008 1.21530 0.95206 0.94113 0.97898 0.94111 0.91238 0.93284 0.90025 0.91559 0.97734 0.95726 0.92937 0.92040 0.88193 0.84960 0.85702 0.90904 0.91382 0.91297 0.85540 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.05 1.15 5.55 -3.83 -0.02 1.13 16 3 N -0.52 -11.67 4.43 -237.52 -1.05 -12.73 16 4 C 0.19 4.85 4.54 -4.98 -0.02 4.83 16 5 C -0.50 -14.30 8.40 -34.44 -0.29 -14.59 16 6 H 0.06 1.82 7.42 -52.49 -0.39 1.43 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.01 0.11 3.84 -4.98 -0.02 0.09 16 14 C 0.39 6.66 6.83 -30.68 -0.21 6.45 16 15 O -0.43 -8.56 14.31 5.58 0.08 -8.48 16 16 C -0.16 -2.28 5.87 -105.07 -0.62 -2.89 16 17 C -0.06 -0.77 9.60 -39.11 -0.38 -1.15 16 18 C -0.14 -1.39 9.68 -39.65 -0.38 -1.78 16 19 C -0.06 -0.62 5.89 -104.50 -0.62 -1.23 16 20 C -0.12 -0.76 10.00 36.01 0.36 -0.40 16 21 C -0.13 -1.34 9.68 -39.65 -0.38 -1.72 16 22 C -0.07 -0.81 9.47 -39.11 -0.37 -1.18 16 23 H 0.04 0.69 6.35 -51.93 -0.33 0.36 16 24 H 0.07 1.46 6.26 -51.93 -0.32 1.13 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 27 H 0.07 1.35 5.86 -51.93 -0.30 1.04 16 28 H 0.00 0.13 6.00 -51.93 -0.31 -0.18 16 29 H 0.02 0.67 7.90 -51.93 -0.41 0.26 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.06 1.02 6.01 -51.93 -0.31 0.71 16 32 H 0.10 1.68 7.86 -51.93 -0.41 1.28 16 33 H 0.13 1.66 7.65 -52.49 -0.40 1.26 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.07 0.38 8.08 -51.93 -0.42 -0.03 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.39 7.05 -52.48 -0.37 1.02 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -31.76 319.18 -8.74 -40.50 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.59 Total: -0.93 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.70 Total: -14.18 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.32 Total: -38.65 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.76 -8.74 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds