Wall clock time and date at job start Mon Mar 30 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47248 * 2 1 4 4 C 1.46898 * 111.00043 * 297.50782 * 3 2 1 5 5 C 1.50700 * 109.47150 * 292.34931 * 4 3 2 6 6 H 1.07994 * 120.00143 * 354.95396 * 5 4 3 7 7 C 1.37879 * 119.99919 * 174.95696 * 5 4 3 8 8 N 1.31520 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47535 * 60.00118 * 9 7 5 11 11 H 1.48503 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47024 * 299.99523 * 9 7 5 13 13 C 1.46897 * 110.99908 * 61.46228 * 3 2 1 14 14 C 1.50702 * 109.47367 * 66.04748 * 13 3 2 15 15 O 1.21257 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47165 * 120.00238 * 179.97438 * 14 13 3 17 17 C 1.39852 * 120.17091 * 179.97438 * 16 14 13 18 18 C 1.37886 * 119.82600 * 180.30267 * 17 16 14 19 19 C 1.38409 * 120.16671 * 359.44268 * 18 17 16 20 20 C 1.50704 * 119.82368 * 180.28626 * 19 18 17 21 21 C 1.38395 * 120.35133 * 0.55912 * 19 18 17 22 22 C 1.37892 * 120.17328 * 359.72585 * 21 19 18 23 23 H 1.09001 * 109.47370 * 299.09058 * 1 2 3 24 24 H 1.09003 * 109.46910 * 59.09150 * 1 2 3 25 25 H 1.09000 * 109.47453 * 179.08378 * 1 2 3 26 26 H 1.09001 * 109.46993 * 239.99315 * 2 1 3 27 27 H 1.09000 * 109.46355 * 120.00121 * 2 1 3 28 28 H 1.09003 * 109.47258 * 52.35020 * 4 3 2 29 29 H 1.08997 * 109.46959 * 172.34639 * 4 3 2 30 30 H 0.96991 * 119.99862 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47464 * 306.04580 * 13 3 2 32 32 H 1.09004 * 109.47278 * 186.04416 * 13 3 2 33 33 H 1.07999 * 120.08896 * 0.02681 * 17 16 14 34 34 H 1.07997 * 119.91846 * 179.72319 * 18 17 16 35 35 H 1.09011 * 109.46725 * 270.27721 * 20 19 18 36 36 H 1.09003 * 109.47042 * 30.26996 * 20 19 18 37 37 H 1.08995 * 109.47564 * 150.27948 * 20 19 18 38 38 H 1.07998 * 119.91870 * 179.69652 * 21 19 18 39 39 H 1.08003 * 120.08764 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5980 2.0924 -1.2164 5 6 2.3002 1.5001 -2.4110 6 1 3.0507 0.7360 -2.2722 7 6 1.9846 1.9337 -3.6812 8 7 1.0703 2.8640 -3.8503 9 14 2.8545 1.1990 -5.1620 10 1 2.6019 -0.2635 -5.2092 11 1 2.3390 1.8312 -6.4029 12 1 4.3147 1.4460 -5.0511 13 6 1.5775 2.0996 1.2048 14 6 2.2291 1.4890 2.4187 15 8 2.9867 0.5507 2.2927 16 6 1.9459 2.0315 3.7571 17 6 2.5482 1.4672 4.8861 18 6 2.2730 1.9771 6.1373 19 6 1.4121 3.0520 6.2764 20 6 1.1218 3.6072 7.6470 21 6 0.8121 3.6159 5.1641 22 6 1.0727 3.1136 3.9066 23 1 -0.3634 0.4996 0.8980 24 1 -0.3633 0.5279 -0.8818 25 1 -0.3634 -1.0275 -0.0164 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 0.5200 1.9901 -1.3410 29 1 1.8552 3.1481 -1.1302 30 1 0.8481 3.1687 -4.7438 31 1 0.4942 2.0220 1.2962 32 1 1.8615 3.1493 1.1294 33 1 3.2237 0.6314 4.7787 34 1 2.7338 1.5397 7.0106 35 1 0.2620 3.0905 8.0737 36 1 1.9897 3.4603 8.2899 37 1 0.9035 4.6722 7.5689 38 1 0.1377 4.4513 5.2811 39 1 0.6034 3.5545 3.0395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050148514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:56 Heat of formation + Delta-G solvation = -28.453705 kcal Electronic energy + Delta-G solvation = -19099.986903 eV Core-core repulsion = 16199.816908 eV Total energy + Delta-G solvation = -2900.169995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20272 -39.60880 -38.08012 -34.71834 -33.93911 -32.10588 -31.31273 -30.26551 -28.47179 -26.65530 -25.00958 -23.56791 -23.37587 -21.57454 -20.30594 -18.39697 -18.04533 -17.05263 -16.64734 -16.52824 -16.15562 -16.10345 -15.43432 -15.23671 -14.77995 -14.56554 -14.44839 -14.28795 -14.17586 -13.50072 -13.14461 -12.97899 -12.96106 -12.79738 -12.72355 -12.58890 -12.54901 -12.41888 -11.98283 -11.91528 -11.58193 -11.39541 -10.59106 -10.49396 -9.95228 -9.66094 -8.92598 -8.19252 -6.27814 -0.30508 0.43448 1.40241 1.42916 1.45130 1.50905 2.40150 2.82419 2.87807 3.13087 3.46309 3.83263 3.96924 4.04340 4.19236 4.23043 4.27150 4.41245 4.45398 4.51353 4.52375 4.63289 4.79854 4.83322 4.88337 4.88903 4.97414 5.10638 5.20094 5.25903 5.32628 5.36380 5.44788 5.47656 5.60213 5.67576 5.97910 6.07005 6.32254 6.52138 6.71549 6.87549 7.40952 8.90835 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039803 B = 0.003886 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.293128 B = 7203.328158 C = 7419.098015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 N -0.541 5.541 4 C 0.204 3.796 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.004 3.996 14 C 0.400 3.600 15 O -0.473 6.473 16 C -0.190 4.190 17 C -0.073 4.073 18 C -0.138 4.138 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.072 4.072 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.074 0.926 28 H -0.010 1.010 29 H 0.005 0.995 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 1.670 22.384 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.264 5.264 4 C 0.078 3.922 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.197 1.197 13 C -0.124 4.124 14 C 0.279 3.721 15 O -0.349 6.349 16 C -0.191 4.191 17 C -0.091 4.091 18 C -0.156 4.156 19 C -0.056 4.056 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.090 4.090 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.007 0.993 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.172 0.828 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.288 1.273 22.176 22.330 hybrid contribution -0.446 -0.220 -1.353 1.441 sum -2.734 1.053 20.823 21.028 Atomic orbital electron populations 1.22292 0.97868 1.02463 1.01146 1.22030 0.93093 0.90312 1.01561 1.62046 1.60062 1.02655 1.01660 1.19478 0.93611 0.92617 0.86455 1.21387 1.21470 1.21836 0.91526 0.92907 1.25788 0.95955 0.95560 1.01820 1.70045 1.33091 1.30603 1.23337 0.85531 0.78848 0.78711 0.78099 1.19541 1.20467 1.19725 1.22514 0.99590 1.00052 0.90251 1.22774 0.78090 0.81400 0.89841 1.90437 1.30185 1.25580 1.88713 1.20466 1.03772 1.01083 0.93828 1.21488 0.96959 0.98404 0.92284 1.21287 0.99793 0.97440 0.97039 1.20619 0.93792 0.93932 0.97300 1.20947 1.03312 1.01883 0.91222 1.21373 1.01234 1.01559 0.91251 1.21690 0.94628 0.93394 0.99295 0.92183 0.93900 0.91010 0.92570 0.90816 0.99260 0.97728 0.92643 0.90312 0.87458 0.85873 0.83277 0.89594 0.90237 0.90006 0.82792 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.06 2.49 5.55 86.30 0.48 2.97 16 3 N -0.54 -24.88 4.43 -905.39 -4.01 -28.89 16 4 C 0.20 10.93 4.54 85.56 0.39 11.32 16 5 C -0.52 -30.62 8.40 25.60 0.21 -30.40 16 6 H 0.05 3.13 7.42 -2.91 -0.02 3.11 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.00 0.16 3.84 85.56 0.33 0.49 16 14 C 0.40 13.79 6.83 28.03 0.19 13.98 16 15 O -0.47 -19.30 14.31 -2.96 -0.04 -19.34 16 16 C -0.19 -5.18 5.87 -20.15 -0.12 -5.30 16 17 C -0.07 -1.79 9.60 22.58 0.22 -1.58 16 18 C -0.14 -2.50 9.68 22.23 0.22 -2.29 16 19 C -0.06 -0.88 5.89 -19.78 -0.12 -1.00 16 20 C -0.12 -1.02 10.00 71.24 0.71 -0.31 16 21 C -0.14 -2.30 9.68 22.23 0.22 -2.08 16 22 C -0.07 -1.56 9.47 22.58 0.21 -1.35 16 23 H 0.06 1.97 6.35 -2.39 -0.02 1.96 16 24 H 0.04 1.82 6.26 -2.39 -0.01 1.81 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.65 7.01 -2.39 -0.02 2.63 16 27 H 0.07 3.06 5.86 -2.39 -0.01 3.05 16 28 H -0.01 -0.57 6.00 -2.39 -0.01 -0.59 16 29 H 0.00 0.26 7.90 -2.39 -0.02 0.24 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.08 2.58 6.01 -2.39 -0.01 2.56 16 32 H 0.11 3.68 7.86 -2.38 -0.02 3.66 16 33 H 0.12 3.16 7.65 -2.91 -0.02 3.14 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 37 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.14 2.74 7.05 -2.91 -0.02 2.72 16 Total: -1.00 -69.88 319.18 3.36 -66.52 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.03 Total: 10.52 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 4.07 Total: -20.69 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.72 Total: -84.43 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.04 Total: -19.34 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.88 3.36 -66.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.065 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds