Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46726 * 2 1 4 4 C 1.46900 * 111.00196 * 286.64044 * 3 2 1 5 5 C 1.50696 * 109.47251 * 160.54896 * 4 3 2 6 6 H 1.07998 * 120.00185 * 4.64477 * 5 4 3 7 7 C 1.37876 * 119.99999 * 184.64666 * 5 4 3 8 8 N 1.31513 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46786 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47374 * 119.99521 * 9 7 5 12 12 H 1.48501 * 109.47014 * 239.99979 * 9 7 5 13 13 C 1.46901 * 111.00025 * 162.68965 * 3 2 1 14 14 C 1.50700 * 109.47187 * 293.95480 * 13 3 2 15 15 O 1.21249 * 119.99766 * 359.97438 * 14 13 3 16 16 C 1.47169 * 120.00021 * 179.97438 * 14 13 3 17 17 C 1.39867 * 120.17023 * 358.18652 * 16 14 13 18 18 C 1.37868 * 119.82056 * 179.74669 * 17 16 14 19 19 C 1.38420 * 120.17562 * 0.55593 * 18 17 16 20 20 C 1.38382 * 120.34859 * 359.70189 * 19 18 17 21 21 C 1.37909 * 120.17073 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.09046 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47031 * 68.29995 * 1 2 3 24 24 H 1.09001 * 109.46873 * 188.29798 * 1 2 3 25 25 H 1.08995 * 109.47328 * 308.29833 * 1 2 3 26 26 H 1.08998 * 109.47119 * 239.99802 * 2 1 3 27 27 H 1.09001 * 109.46966 * 119.99843 * 2 1 3 28 28 H 1.09001 * 109.47587 * 280.55335 * 4 3 2 29 29 H 1.09000 * 109.46669 * 40.55295 * 4 3 2 30 30 H 0.96992 * 120.00537 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47047 * 53.95456 * 13 3 2 32 32 H 1.09001 * 109.47406 * 173.94912 * 13 3 2 33 33 H 1.07998 * 120.09194 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.91411 * 180.27772 * 18 17 16 35 35 H 1.08003 * 119.82973 * 179.71589 * 19 18 17 36 36 H 1.07998 * 119.91500 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46699 * 263.12739 * 22 21 20 38 38 H 1.09005 * 109.46929 * 23.12435 * 22 21 20 39 39 H 1.08991 * 109.47535 * 143.13037 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8248 2.0123 -1.3140 5 6 1.8772 3.5112 -1.1678 6 1 2.1134 3.9526 -0.2108 7 6 1.6236 4.3193 -2.2558 8 7 1.3365 3.7820 -3.4213 9 14 1.6893 6.1774 -2.0748 10 1 2.0319 6.5262 -0.6726 11 1 2.7223 6.7276 -2.9887 12 1 0.3654 6.7553 -2.4189 13 6 3.4295 1.4450 0.4081 14 6 3.5540 1.0208 1.8487 15 8 2.5657 0.7005 2.4739 16 6 4.8751 0.9951 2.4968 17 6 6.0219 1.3273 1.7683 18 6 7.2553 1.3060 2.3840 19 6 7.3618 0.9459 3.7162 20 6 6.2325 0.6107 4.4423 21 6 4.9909 0.6326 3.8423 22 6 3.7623 0.2667 4.6346 23 1 -0.3633 0.3800 -0.9549 24 1 -0.3633 -1.0169 0.1483 25 1 -0.3634 0.6369 0.8065 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6124 1.6857 -1.9930 29 1 0.8545 1.7202 -1.7157 30 1 1.1584 4.3504 -4.1868 31 1 4.0183 0.7762 -0.2198 32 1 3.7970 2.4652 0.2966 33 1 5.9411 1.6042 0.7275 34 1 8.1414 1.5666 1.8241 35 1 8.3313 0.9267 4.1917 36 1 6.3236 0.3312 5.4815 37 1 3.5110 -0.7783 4.4532 38 1 3.9576 0.4144 5.6968 39 1 2.9298 0.8992 4.3269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050148586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -6.854570 kcal Electronic energy + Delta-G solvation = -19460.413063 eV Core-core repulsion = 16561.179677 eV Total energy + Delta-G solvation = -2899.233386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12463 -38.19486 -36.21083 -32.74724 -32.54216 -31.73202 -30.15501 -28.06811 -26.91546 -25.31851 -23.43459 -22.52321 -21.45917 -20.15941 -19.21501 -16.81375 -16.39293 -15.75205 -15.51953 -14.96247 -14.69768 -14.57223 -14.20957 -13.72973 -13.59419 -13.15165 -12.98144 -12.86790 -12.29994 -12.04961 -12.00964 -11.72449 -11.67978 -11.35803 -11.13764 -11.08001 -10.88311 -10.79548 -10.51878 -10.25256 -9.82912 -9.24169 -8.98596 -8.83982 -8.72502 -8.41013 -7.23534 -6.02054 -4.03340 0.77701 1.32318 2.68513 3.31195 3.39048 3.44243 3.80243 4.21589 4.44461 4.74298 4.83159 4.92078 5.02479 5.21245 5.32777 5.33786 5.59937 5.64612 5.77363 5.80888 5.83429 5.85937 5.97611 6.08981 6.13724 6.21857 6.28365 6.29284 6.37864 6.44623 6.61345 6.69303 6.87712 6.93089 7.22345 7.32658 7.82410 7.93178 8.14616 8.20634 8.54953 9.04595 9.61026 11.08433 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.005515 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.040452 B = 5076.000127 C = 5944.044906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 N -0.523 5.523 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.020 3.980 14 C 0.391 3.609 15 O -0.431 6.431 16 C -0.165 4.165 17 C -0.068 4.068 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.141 4.141 21 C -0.028 4.028 22 C -0.126 4.126 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.065 0.935 28 H -0.011 1.011 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -7.502 12.240 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 N -0.248 5.248 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.109 4.109 14 C 0.268 3.732 15 O -0.305 6.305 16 C -0.166 4.166 17 C -0.086 4.086 18 C -0.160 4.160 19 C -0.110 4.110 20 C -0.159 4.159 21 C -0.028 4.028 22 C -0.182 4.182 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.007 0.993 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.546 -7.360 12.716 17.521 hybrid contribution 0.750 0.654 -0.756 1.250 sum 10.296 -6.706 11.960 17.147 Atomic orbital electron populations 1.21661 0.95385 0.99900 1.02551 1.22058 0.96426 0.90366 0.98939 1.62002 1.14284 1.15362 1.33132 1.19830 0.96747 0.94364 0.82497 1.21208 1.46729 0.90688 0.95712 0.91930 1.24977 0.95450 0.98898 0.95223 1.69960 1.48277 1.35190 1.00440 0.86478 0.77611 0.85447 0.78126 1.19664 1.21134 1.21007 1.22299 0.92872 1.03302 0.92413 1.22713 0.86717 0.73474 0.90303 1.90394 1.39841 1.35555 1.64724 1.20593 0.95651 1.05610 0.94791 1.21563 0.91670 0.95169 1.00172 1.21112 0.97665 1.02007 0.95207 1.21335 0.98432 0.96860 0.94407 1.21032 0.91970 1.02683 1.00172 1.20258 0.95625 0.93969 0.92981 1.21150 0.96260 1.03025 0.97768 0.92686 0.93819 0.91934 0.96490 0.91688 0.99283 0.94236 0.92994 0.92903 0.86803 0.84717 0.85589 0.85939 0.85815 0.90875 0.92553 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.86 37.16 0.37 -2.19 16 2 C 0.05 0.99 5.22 -3.82 -0.02 0.97 16 3 N -0.52 -11.57 4.11 -237.51 -0.98 -12.55 16 4 C 0.19 4.93 4.58 -4.98 -0.02 4.90 16 5 C -0.50 -14.09 8.60 -34.44 -0.30 -14.39 16 6 H 0.06 1.75 7.65 -52.49 -0.40 1.35 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.02 0.38 3.89 -4.98 -0.02 0.36 16 14 C 0.39 6.74 6.63 -30.68 -0.20 6.53 16 15 O -0.43 -8.15 11.41 5.58 0.06 -8.09 16 16 C -0.17 -2.41 5.87 -105.06 -0.62 -3.03 16 17 C -0.07 -0.85 9.47 -39.11 -0.37 -1.22 16 18 C -0.14 -1.51 10.03 -39.65 -0.40 -1.91 16 19 C -0.09 -0.92 10.04 -39.46 -0.40 -1.32 16 20 C -0.14 -1.54 9.66 -39.65 -0.38 -1.92 16 21 C -0.03 -0.37 5.92 -104.14 -0.62 -0.99 16 22 C -0.13 -1.60 8.80 36.01 0.32 -1.28 16 23 H 0.05 1.09 6.88 -51.93 -0.36 0.73 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 27 H 0.06 1.22 5.82 -51.93 -0.30 0.92 16 28 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 29 H 0.04 1.10 6.46 -51.93 -0.34 0.76 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 32 H 0.11 2.22 7.29 -51.93 -0.38 1.84 16 33 H 0.13 1.58 7.05 -52.49 -0.37 1.21 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 1.07 8.05 -52.49 -0.42 0.65 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.10 1.49 5.74 -51.93 -0.30 1.19 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -30.93 319.59 -8.92 -39.85 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.78 Total: -0.81 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -2.76 Total: -14.02 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.24 Total: -38.32 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.93 -8.92 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.996 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds