Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46726 * 2 1 4 4 C 1.46900 * 111.00196 * 286.64044 * 3 2 1 5 5 C 1.50696 * 109.47251 * 160.54896 * 4 3 2 6 6 H 1.07998 * 120.00185 * 4.64477 * 5 4 3 7 7 C 1.37876 * 119.99999 * 184.64666 * 5 4 3 8 8 N 1.31513 * 120.00407 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46786 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47374 * 119.99521 * 9 7 5 12 12 H 1.48501 * 109.47014 * 239.99979 * 9 7 5 13 13 C 1.46901 * 111.00025 * 162.68965 * 3 2 1 14 14 C 1.50700 * 109.47187 * 293.95480 * 13 3 2 15 15 O 1.21249 * 119.99766 * 359.97438 * 14 13 3 16 16 C 1.47169 * 120.00021 * 179.97438 * 14 13 3 17 17 C 1.39867 * 120.17023 * 358.18652 * 16 14 13 18 18 C 1.37868 * 119.82056 * 179.74669 * 17 16 14 19 19 C 1.38420 * 120.17562 * 0.55593 * 18 17 16 20 20 C 1.38382 * 120.34859 * 359.70189 * 19 18 17 21 21 C 1.37909 * 120.17073 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.09046 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47031 * 68.29995 * 1 2 3 24 24 H 1.09001 * 109.46873 * 188.29798 * 1 2 3 25 25 H 1.08995 * 109.47328 * 308.29833 * 1 2 3 26 26 H 1.08998 * 109.47119 * 239.99802 * 2 1 3 27 27 H 1.09001 * 109.46966 * 119.99843 * 2 1 3 28 28 H 1.09001 * 109.47587 * 280.55335 * 4 3 2 29 29 H 1.09000 * 109.46669 * 40.55295 * 4 3 2 30 30 H 0.96992 * 120.00537 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47047 * 53.95456 * 13 3 2 32 32 H 1.09001 * 109.47406 * 173.94912 * 13 3 2 33 33 H 1.07998 * 120.09194 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.91411 * 180.27772 * 18 17 16 35 35 H 1.08003 * 119.82973 * 179.71589 * 19 18 17 36 36 H 1.07998 * 119.91500 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46699 * 263.12739 * 22 21 20 38 38 H 1.09005 * 109.46929 * 23.12435 * 22 21 20 39 39 H 1.08991 * 109.47535 * 143.13037 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8248 2.0123 -1.3140 5 6 1.8772 3.5112 -1.1678 6 1 2.1134 3.9526 -0.2108 7 6 1.6236 4.3193 -2.2558 8 7 1.3365 3.7820 -3.4213 9 14 1.6893 6.1774 -2.0748 10 1 2.0319 6.5262 -0.6726 11 1 2.7223 6.7276 -2.9887 12 1 0.3654 6.7553 -2.4189 13 6 3.4295 1.4450 0.4081 14 6 3.5540 1.0208 1.8487 15 8 2.5657 0.7005 2.4739 16 6 4.8751 0.9951 2.4968 17 6 6.0219 1.3273 1.7683 18 6 7.2553 1.3060 2.3840 19 6 7.3618 0.9459 3.7162 20 6 6.2325 0.6107 4.4423 21 6 4.9909 0.6326 3.8423 22 6 3.7623 0.2667 4.6346 23 1 -0.3633 0.3800 -0.9549 24 1 -0.3633 -1.0169 0.1483 25 1 -0.3634 0.6369 0.8065 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6124 1.6857 -1.9930 29 1 0.8545 1.7202 -1.7157 30 1 1.1584 4.3504 -4.1868 31 1 4.0183 0.7762 -0.2198 32 1 3.7970 2.4652 0.2966 33 1 5.9411 1.6042 0.7275 34 1 8.1414 1.5666 1.8241 35 1 8.3313 0.9267 4.1917 36 1 6.3236 0.3312 5.4815 37 1 3.5110 -0.7783 4.4532 38 1 3.9576 0.4144 5.6968 39 1 2.9298 0.8992 4.3269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050148586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = -24.578534 kcal Electronic energy + Delta-G solvation = -19461.181631 eV Core-core repulsion = 16561.179677 eV Total energy + Delta-G solvation = -2900.001955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31043 -39.37868 -37.86171 -34.73779 -33.63346 -32.85195 -31.65738 -29.78257 -28.13156 -26.90333 -24.68237 -24.25848 -22.54941 -21.63028 -20.57931 -18.58591 -17.92375 -16.94373 -16.74404 -16.42686 -16.26022 -15.96940 -15.65089 -15.17624 -14.88591 -14.38855 -14.26517 -14.19244 -14.00108 -13.46603 -13.24291 -13.02144 -12.95659 -12.88531 -12.67299 -12.61824 -12.56488 -12.26041 -12.11133 -11.94886 -11.63529 -11.30777 -10.61724 -10.20222 -9.90386 -9.65513 -9.01981 -8.19216 -6.29153 -0.25401 0.43867 1.40203 1.41943 1.50141 1.54967 2.40445 2.83310 2.88706 3.13526 3.42759 3.85632 3.93248 4.17206 4.18302 4.25844 4.29256 4.43010 4.52959 4.53706 4.59188 4.68244 4.77918 4.81438 4.87089 4.90621 5.00998 5.06889 5.22181 5.24956 5.29217 5.35730 5.41925 5.52269 5.64185 5.67080 6.01161 6.07149 6.30778 6.55503 6.72011 6.85430 7.40288 8.91374 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.005515 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.040452 B = 5076.000127 C = 5944.044906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.019 3.981 14 C 0.396 3.604 15 O -0.456 6.456 16 C -0.191 4.191 17 C -0.078 4.078 18 C -0.141 4.141 19 C -0.080 4.080 20 C -0.141 4.141 21 C -0.042 4.042 22 C -0.122 4.122 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.019 0.981 27 H 0.076 0.924 28 H -0.031 1.031 29 H 0.013 0.987 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.647 -7.286 13.960 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.077 4.077 3 N -0.262 5.262 4 C 0.081 3.919 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.206 1.206 13 C -0.110 4.110 14 C 0.275 3.725 15 O -0.332 6.332 16 C -0.192 4.192 17 C -0.096 4.096 18 C -0.159 4.159 19 C -0.098 4.098 20 C -0.158 4.158 21 C -0.043 4.043 22 C -0.178 4.178 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.094 0.906 28 H -0.014 1.014 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.792 -7.155 14.446 19.973 hybrid contribution 0.143 0.530 -1.251 1.366 sum 11.935 -6.624 13.195 18.985 Atomic orbital electron populations 1.21618 0.94715 1.01612 1.00941 1.22119 0.97033 0.89099 0.99442 1.61919 1.16707 1.16898 1.30690 1.19462 0.94504 0.93956 0.83938 1.21445 1.46940 0.91855 0.95612 0.92496 1.25838 0.94801 1.03872 0.94746 1.70074 1.48901 1.37093 1.01237 0.85391 0.77853 0.79336 0.78379 1.19113 1.19991 1.20576 1.22332 0.91087 1.03167 0.94398 1.22681 0.87960 0.72677 0.89172 1.90390 1.40928 1.37095 1.64836 1.20389 0.94420 1.08603 0.95820 1.21695 0.92152 0.95436 1.00356 1.21473 0.97547 1.00985 0.95908 1.21809 0.99727 0.94332 0.93937 1.21370 0.91099 1.01820 1.01541 1.20430 0.96895 0.94430 0.92496 1.21064 0.95332 1.02195 0.99191 0.94542 0.90433 0.93161 0.96287 0.90564 1.01355 0.96865 0.92654 0.91562 0.87956 0.84760 0.82889 0.82248 0.83070 0.91093 0.90073 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.86 71.98 0.71 -4.27 16 2 C 0.05 2.04 5.22 86.30 0.45 2.49 16 3 N -0.54 -24.68 4.11 -905.36 -3.72 -28.40 16 4 C 0.21 11.21 4.58 85.56 0.39 11.60 16 5 C -0.52 -29.87 8.60 25.60 0.22 -29.65 16 6 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 9 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.02 0.73 3.89 85.56 0.33 1.06 16 14 C 0.40 13.99 6.63 28.03 0.19 14.18 16 15 O -0.46 -17.77 11.41 -2.93 -0.03 -17.81 16 16 C -0.19 -5.51 5.87 -20.15 -0.12 -5.63 16 17 C -0.08 -1.89 9.47 22.58 0.21 -1.68 16 18 C -0.14 -2.56 10.03 22.23 0.22 -2.34 16 19 C -0.08 -1.26 10.04 22.35 0.22 -1.04 16 20 C -0.14 -2.60 9.66 22.23 0.21 -2.39 16 21 C -0.04 -1.06 5.92 -19.55 -0.12 -1.18 16 22 C -0.12 -3.01 8.80 71.24 0.63 -2.38 16 23 H 0.04 1.49 6.88 -2.39 -0.02 1.47 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.02 0.75 8.03 -2.39 -0.02 0.73 16 27 H 0.08 2.90 5.82 -2.39 -0.01 2.88 16 28 H -0.03 -1.77 8.00 -2.39 -0.02 -1.79 16 29 H 0.01 0.78 6.46 -2.39 -0.02 0.76 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.07 2.37 8.02 -2.38 -0.02 2.35 16 32 H 0.10 4.17 7.29 -2.39 -0.02 4.15 16 33 H 0.13 3.12 7.05 -2.91 -0.02 3.10 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.15 1.93 8.05 -2.91 -0.02 1.91 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.53 8.04 -2.38 -0.02 1.51 16 39 H 0.07 2.17 5.74 -2.39 -0.01 2.16 16 Total: -1.00 -68.22 319.59 3.60 -64.62 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.03 Total: 11.15 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.02 Total: -20.43 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.44 Total: -84.16 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.03 Total: -17.81 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.22 3.60 -64.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.039 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds