Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47193 * 2 1 4 4 C 1.46904 * 111.00017 * 297.51269 * 3 2 1 5 5 C 1.50704 * 109.46674 * 292.34795 * 4 3 2 6 6 H 1.07994 * 120.00253 * 354.95630 * 5 4 3 7 7 C 1.37877 * 119.99520 * 174.95711 * 5 4 3 8 8 N 1.31517 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99711 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47230 * 90.00386 * 9 7 5 11 11 H 1.48505 * 109.47106 * 210.00224 * 9 7 5 12 12 H 1.48499 * 109.47265 * 330.00203 * 9 7 5 13 13 C 1.46902 * 111.00086 * 61.46449 * 3 2 1 14 14 C 1.50695 * 109.47130 * 66.04544 * 13 3 2 15 15 O 1.21260 * 120.00114 * 0.02562 * 14 13 3 16 16 C 1.47172 * 120.00165 * 180.02562 * 14 13 3 17 17 C 1.39875 * 120.16780 * 0.27264 * 16 14 13 18 18 C 1.37868 * 119.82060 * 180.25100 * 17 16 14 19 19 C 1.38429 * 120.17218 * 359.45650 * 18 17 16 20 20 C 1.38382 * 120.34784 * 0.29701 * 19 18 17 21 21 C 1.50696 * 119.91179 * 179.97438 * 20 19 18 22 22 C 1.37908 * 120.17421 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47026 * 299.08436 * 1 2 3 24 24 H 1.08994 * 109.47186 * 59.08699 * 1 2 3 25 25 H 1.09006 * 109.46850 * 179.08731 * 1 2 3 26 26 H 1.09001 * 109.46946 * 239.99935 * 2 1 3 27 27 H 1.09007 * 109.46853 * 120.00166 * 2 1 3 28 28 H 1.08998 * 109.47011 * 52.34830 * 4 3 2 29 29 H 1.08998 * 109.47309 * 172.34653 * 4 3 2 30 30 H 0.97000 * 119.99388 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46943 * 306.04705 * 13 3 2 32 32 H 1.09003 * 109.46968 * 186.04649 * 13 3 2 33 33 H 1.08001 * 120.09035 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.91387 * 179.73213 * 18 17 16 35 35 H 1.07998 * 119.82709 * 180.28146 * 19 18 17 36 36 H 1.09003 * 109.47675 * 89.99615 * 21 20 19 37 37 H 1.09003 * 109.47306 * 209.99905 * 21 20 19 38 38 H 1.09002 * 109.47028 * 329.99428 * 21 20 19 39 39 H 1.08002 * 120.08646 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5979 2.0925 -1.2164 5 6 2.3001 1.5001 -2.4110 6 1 3.0505 0.7360 -2.2722 7 6 1.9844 1.9338 -3.6812 8 7 1.0708 2.8647 -3.8501 9 14 2.8553 1.2001 -5.1619 10 1 2.0980 0.0180 -5.6460 11 1 2.9332 2.2149 -6.2433 12 1 4.2269 0.7842 -4.7736 13 6 1.5775 2.0997 1.2048 14 6 2.2291 1.4890 2.4187 15 8 2.9875 0.5512 2.2926 16 6 1.9451 2.0308 3.7573 17 6 1.0666 3.1088 3.9074 18 6 0.8097 3.6140 5.1642 19 6 1.4099 3.0500 6.2768 20 6 2.2763 1.9800 6.1370 21 6 2.9248 1.3740 7.3548 22 6 2.5478 1.4669 4.8860 23 1 -0.3633 0.4995 0.8981 24 1 -0.3633 0.5279 -0.8816 25 1 -0.3633 -1.0276 -0.0164 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.5199 1.9901 -1.3409 29 1 1.8550 3.1482 -1.1303 30 1 0.8485 3.1694 -4.7437 31 1 0.4941 2.0220 1.2963 32 1 1.8615 3.1493 1.1293 33 1 0.5941 3.5471 3.0407 34 1 0.1349 4.4490 5.2814 35 1 1.2012 3.4473 7.2591 36 1 2.2922 0.5765 7.7445 37 1 3.8981 0.9656 7.0829 38 1 3.0532 2.1416 8.1180 39 1 3.2245 0.6321 4.7785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050148595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = -9.322762 kcal Electronic energy + Delta-G solvation = -19149.719484 eV Core-core repulsion = 16250.379070 eV Total energy + Delta-G solvation = -2899.340415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04306 -38.45387 -36.41848 -33.18170 -32.54164 -31.30247 -29.73159 -28.40546 -26.97712 -25.49569 -23.39334 -22.97125 -21.88255 -19.99183 -18.68763 -16.99235 -16.19396 -15.72218 -15.55525 -15.41627 -14.70755 -14.42575 -14.25209 -13.97080 -13.75477 -13.44779 -13.24963 -12.69749 -12.45253 -12.30134 -12.05215 -11.80463 -11.68846 -11.46086 -11.17612 -11.14308 -10.84693 -10.72855 -10.54580 -10.00278 -9.94303 -9.35472 -9.04703 -8.95849 -8.83690 -8.41000 -7.15760 -6.00623 -4.00814 0.70136 1.23923 2.60546 3.34333 3.40333 3.45971 3.74145 4.11017 4.47324 4.61907 4.71673 4.92158 5.08235 5.11602 5.19874 5.29813 5.35235 5.37772 5.56073 5.70002 5.73208 5.78470 5.81784 5.95321 5.96117 6.07550 6.19068 6.26056 6.29446 6.40181 6.49774 6.71672 6.78810 6.99102 7.28874 7.43171 7.82285 7.89533 8.11765 8.21866 8.56608 9.07796 9.63215 11.10143 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.003980 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.048640 B = 7033.972611 C = 7252.571789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 N -0.522 5.522 4 C 0.187 3.813 5 C -0.502 4.502 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.006 3.994 14 C 0.392 3.608 15 O -0.431 6.431 16 C -0.154 4.154 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.067 4.067 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.005 0.995 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 0.298 20.254 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.246 5.246 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.123 4.123 14 C 0.268 3.732 15 O -0.304 6.304 16 C -0.156 4.156 17 C -0.098 4.098 18 C -0.147 4.147 19 C -0.116 4.116 20 C -0.103 4.103 21 C -0.170 4.170 22 C -0.085 4.085 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.944 -0.108 20.026 20.049 hybrid contribution -0.674 -0.070 -0.895 1.123 sum -1.618 -0.178 19.131 19.200 Atomic orbital electron populations 1.22428 0.99792 1.01135 1.01585 1.22110 0.91515 0.91202 1.02529 1.62207 1.59097 1.01960 1.01329 1.19842 0.94935 0.93664 0.85303 1.21150 1.21248 1.21699 0.90009 0.91804 1.24972 0.95364 0.95277 0.99018 1.69956 1.32146 1.29601 1.22372 0.86507 0.80172 0.78683 0.82142 1.20772 1.21323 1.19737 1.22404 0.98405 1.00010 0.91433 1.22690 0.79372 0.82309 0.88842 1.90458 1.28169 1.23685 1.88137 1.20747 1.00565 0.98859 0.95405 1.21532 0.95691 0.94509 0.98045 1.21125 1.00664 1.00533 0.92410 1.21243 0.96002 0.95517 0.98844 1.19890 0.98460 0.96884 0.95041 1.20789 1.00483 1.00765 0.94963 1.21322 0.97614 0.98540 0.90993 0.94110 0.91230 0.93281 0.90016 0.91569 0.97729 0.95705 0.93002 0.92010 0.88160 0.84869 0.85471 0.85897 0.91144 0.91347 0.91512 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.05 1.14 5.55 -3.83 -0.02 1.12 16 3 N -0.52 -11.64 4.43 -237.51 -1.05 -12.69 16 4 C 0.19 4.83 4.54 -4.97 -0.02 4.81 16 5 C -0.50 -14.25 8.40 -34.44 -0.29 -14.54 16 6 H 0.06 1.83 7.42 -52.49 -0.39 1.44 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.01 0.12 3.84 -4.98 -0.02 0.10 16 14 C 0.39 6.65 6.83 -30.69 -0.21 6.44 16 15 O -0.43 -8.53 14.31 5.57 0.08 -8.45 16 16 C -0.15 -2.14 5.87 -105.06 -0.62 -2.76 16 17 C -0.08 -0.92 9.47 -39.10 -0.37 -1.29 16 18 C -0.13 -1.26 10.03 -39.65 -0.40 -1.66 16 19 C -0.10 -0.92 9.69 -39.46 -0.38 -1.30 16 20 C -0.10 -1.07 5.87 -104.69 -0.61 -1.68 16 21 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 22 C -0.07 -0.85 9.25 -39.11 -0.36 -1.21 16 23 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 24 H 0.07 1.46 6.26 -51.93 -0.32 1.13 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 27 H 0.07 1.34 5.86 -51.93 -0.30 1.04 16 28 H 0.01 0.13 6.00 -51.93 -0.31 -0.18 16 29 H 0.02 0.67 7.90 -51.93 -0.41 0.26 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.06 1.02 6.00 -51.93 -0.31 0.71 16 32 H 0.10 1.69 7.86 -51.93 -0.41 1.28 16 33 H 0.13 1.38 7.05 -52.49 -0.37 1.01 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.13 1.69 7.65 -52.49 -0.40 1.29 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -31.71 319.18 -8.74 -40.45 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.59 Total: -0.90 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.70 Total: -14.22 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.32 Total: -38.57 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.71 -8.74 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.124 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds