Wall clock time and date at job start Mon Mar 30 2020 06:31:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46893 * 109.47193 * 2 1
4 4 C 1.46904 * 111.00017 * 297.51269 * 3 2 1
5 5 C 1.50704 * 109.46674 * 292.34795 * 4 3 2
6 6 H 1.07994 * 120.00253 * 354.95630 * 5 4 3
7 7 C 1.37877 * 119.99520 * 174.95711 * 5 4 3
8 8 N 1.31517 * 120.00127 * 0.02562 * 7 5 4
9 9 Si 1.86797 * 119.99711 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.47230 * 90.00386 * 9 7 5
11 11 H 1.48505 * 109.47106 * 210.00224 * 9 7 5
12 12 H 1.48499 * 109.47265 * 330.00203 * 9 7 5
13 13 C 1.46902 * 111.00086 * 61.46449 * 3 2 1
14 14 C 1.50695 * 109.47130 * 66.04544 * 13 3 2
15 15 O 1.21260 * 120.00114 * 0.02562 * 14 13 3
16 16 C 1.47172 * 120.00165 * 180.02562 * 14 13 3
17 17 C 1.39875 * 120.16780 * 0.27264 * 16 14 13
18 18 C 1.37868 * 119.82060 * 180.25100 * 17 16 14
19 19 C 1.38429 * 120.17218 * 359.45650 * 18 17 16
20 20 C 1.38382 * 120.34784 * 0.29701 * 19 18 17
21 21 C 1.50696 * 119.91179 * 179.97438 * 20 19 18
22 22 C 1.37908 * 120.17421 * 359.97438 * 20 19 18
23 23 H 1.08996 * 109.47026 * 299.08436 * 1 2 3
24 24 H 1.08994 * 109.47186 * 59.08699 * 1 2 3
25 25 H 1.09006 * 109.46850 * 179.08731 * 1 2 3
26 26 H 1.09001 * 109.46946 * 239.99935 * 2 1 3
27 27 H 1.09007 * 109.46853 * 120.00166 * 2 1 3
28 28 H 1.08998 * 109.47011 * 52.34830 * 4 3 2
29 29 H 1.08998 * 109.47309 * 172.34653 * 4 3 2
30 30 H 0.97000 * 119.99388 * 180.02562 * 8 7 5
31 31 H 1.09002 * 109.46943 * 306.04705 * 13 3 2
32 32 H 1.09003 * 109.46968 * 186.04649 * 13 3 2
33 33 H 1.08001 * 120.09035 * 359.97438 * 17 16 14
34 34 H 1.07995 * 119.91387 * 179.73213 * 18 17 16
35 35 H 1.07998 * 119.82709 * 180.28146 * 19 18 17
36 36 H 1.09003 * 109.47675 * 89.99615 * 21 20 19
37 37 H 1.09003 * 109.47306 * 209.99905 * 21 20 19
38 38 H 1.09002 * 109.47028 * 329.99428 * 21 20 19
39 39 H 1.08002 * 120.08646 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.5979 2.0925 -1.2164
5 6 2.3001 1.5001 -2.4110
6 1 3.0505 0.7360 -2.2722
7 6 1.9844 1.9338 -3.6812
8 7 1.0708 2.8647 -3.8501
9 14 2.8553 1.2001 -5.1619
10 1 2.0980 0.0180 -5.6460
11 1 2.9332 2.2149 -6.2433
12 1 4.2269 0.7842 -4.7736
13 6 1.5775 2.0997 1.2048
14 6 2.2291 1.4890 2.4187
15 8 2.9875 0.5512 2.2926
16 6 1.9451 2.0308 3.7573
17 6 1.0666 3.1088 3.9074
18 6 0.8097 3.6140 5.1642
19 6 1.4099 3.0500 6.2768
20 6 2.2763 1.9800 6.1370
21 6 2.9248 1.3740 7.3548
22 6 2.5478 1.4669 4.8860
23 1 -0.3633 0.4995 0.8981
24 1 -0.3633 0.5279 -0.8816
25 1 -0.3633 -1.0276 -0.0164
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 0.5199 1.9901 -1.3409
29 1 1.8550 3.1482 -1.1303
30 1 0.8485 3.1694 -4.7437
31 1 0.4941 2.0220 1.2963
32 1 1.8615 3.1493 1.1293
33 1 0.5941 3.5471 3.0407
34 1 0.1349 4.4490 5.2814
35 1 1.2012 3.4473 7.2591
36 1 2.2922 0.5765 7.7445
37 1 3.8981 0.9656 7.0829
38 1 3.0532 2.1416 8.1180
39 1 3.2245 0.6321 4.7785
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000050148595.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:31:00
Heat of formation + Delta-G solvation = -9.322762 kcal
Electronic energy + Delta-G solvation = -19149.719484 eV
Core-core repulsion = 16250.379070 eV
Total energy + Delta-G solvation = -2899.340415 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.04306 -38.45387 -36.41848 -33.18170 -32.54164 -31.30247 -29.73159 -28.40546
-26.97712 -25.49569 -23.39334 -22.97125 -21.88255 -19.99183 -18.68763 -16.99235
-16.19396 -15.72218 -15.55525 -15.41627 -14.70755 -14.42575 -14.25209 -13.97080
-13.75477 -13.44779 -13.24963 -12.69749 -12.45253 -12.30134 -12.05215 -11.80463
-11.68846 -11.46086 -11.17612 -11.14308 -10.84693 -10.72855 -10.54580 -10.00278
-9.94303 -9.35472 -9.04703 -8.95849 -8.83690 -8.41000 -7.15760 -6.00623
-4.00814 0.70136 1.23923 2.60546 3.34333 3.40333 3.45971 3.74145
4.11017 4.47324 4.61907 4.71673 4.92158 5.08235 5.11602 5.19874
5.29813 5.35235 5.37772 5.56073 5.70002 5.73208 5.78470 5.81784
5.95321 5.96117 6.07550 6.19068 6.26056 6.29446 6.40181 6.49774
6.71672 6.78810 6.99102 7.28874 7.43171 7.82285 7.89533 8.11765
8.21866 8.56608 9.07796 9.63215 11.10143
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.038450 B = 0.003980 C = 0.003860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 728.048640 B = 7033.972611 C = 7252.571789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.055 3.945
3 N -0.522 5.522
4 C 0.187 3.813
5 C -0.502 4.502
6 H 0.064 0.936
7 C 0.054 3.946
8 N -0.901 5.901
9 Si 0.897 3.103
10 H -0.281 1.281
11 H -0.287 1.287
12 H -0.273 1.273
13 C 0.006 3.994
14 C 0.392 3.608
15 O -0.431 6.431
16 C -0.154 4.154
17 C -0.080 4.080
18 C -0.129 4.129
19 C -0.098 4.098
20 C -0.103 4.103
21 C -0.113 4.113
22 C -0.067 4.067
23 H 0.040 0.960
24 H 0.069 0.931
25 H 0.048 0.952
26 H 0.081 0.919
27 H 0.066 0.934
28 H 0.005 0.995
29 H 0.025 0.975
30 H 0.260 0.740
31 H 0.062 0.938
32 H 0.100 0.900
33 H 0.133 0.867
34 H 0.127 0.873
35 H 0.123 0.877
36 H 0.070 0.930
37 H 0.068 0.932
38 H 0.066 0.934
39 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.798 0.298 20.254 20.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.249 4.249
2 C -0.074 4.074
3 N -0.246 5.246
4 C 0.063 3.937
5 C -0.541 4.541
6 H 0.082 0.918
7 C -0.146 4.146
8 N -0.541 5.541
9 Si 0.725 3.275
10 H -0.208 1.208
11 H -0.213 1.213
12 H -0.197 1.197
13 C -0.123 4.123
14 C 0.268 3.732
15 O -0.304 6.304
16 C -0.156 4.156
17 C -0.098 4.098
18 C -0.147 4.147
19 C -0.116 4.116
20 C -0.103 4.103
21 C -0.170 4.170
22 C -0.085 4.085
23 H 0.059 0.941
24 H 0.088 0.912
25 H 0.067 0.933
26 H 0.100 0.900
27 H 0.084 0.916
28 H 0.023 0.977
29 H 0.043 0.957
30 H 0.070 0.930
31 H 0.080 0.920
32 H 0.118 0.882
33 H 0.151 0.849
34 H 0.145 0.855
35 H 0.141 0.859
36 H 0.089 0.911
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -0.944 -0.108 20.026 20.049
hybrid contribution -0.674 -0.070 -0.895 1.123
sum -1.618 -0.178 19.131 19.200
Atomic orbital electron populations
1.22428 0.99792 1.01135 1.01585 1.22110 0.91515 0.91202 1.02529
1.62207 1.59097 1.01960 1.01329 1.19842 0.94935 0.93664 0.85303
1.21150 1.21248 1.21699 0.90009 0.91804 1.24972 0.95364 0.95277
0.99018 1.69956 1.32146 1.29601 1.22372 0.86507 0.80172 0.78683
0.82142 1.20772 1.21323 1.19737 1.22404 0.98405 1.00010 0.91433
1.22690 0.79372 0.82309 0.88842 1.90458 1.28169 1.23685 1.88137
1.20747 1.00565 0.98859 0.95405 1.21532 0.95691 0.94509 0.98045
1.21125 1.00664 1.00533 0.92410 1.21243 0.96002 0.95517 0.98844
1.19890 0.98460 0.96884 0.95041 1.20789 1.00483 1.00765 0.94963
1.21322 0.97614 0.98540 0.90993 0.94110 0.91230 0.93281 0.90016
0.91569 0.97729 0.95705 0.93002 0.92010 0.88160 0.84869 0.85471
0.85897 0.91144 0.91347 0.91512 0.85014
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.55 9.26 37.16 0.34 -3.21 16
2 C 0.05 1.14 5.55 -3.83 -0.02 1.12 16
3 N -0.52 -11.64 4.43 -237.51 -1.05 -12.69 16
4 C 0.19 4.83 4.54 -4.97 -0.02 4.81 16
5 C -0.50 -14.25 8.40 -34.44 -0.29 -14.54 16
6 H 0.06 1.83 7.42 -52.49 -0.39 1.44 16
7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16
9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16
10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
13 C 0.01 0.12 3.84 -4.98 -0.02 0.10 16
14 C 0.39 6.65 6.83 -30.69 -0.21 6.44 16
15 O -0.43 -8.53 14.31 5.57 0.08 -8.45 16
16 C -0.15 -2.14 5.87 -105.06 -0.62 -2.76 16
17 C -0.08 -0.92 9.47 -39.10 -0.37 -1.29 16
18 C -0.13 -1.26 10.03 -39.65 -0.40 -1.66 16
19 C -0.10 -0.92 9.69 -39.46 -0.38 -1.30 16
20 C -0.10 -1.07 5.87 -104.69 -0.61 -1.68 16
21 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16
22 C -0.07 -0.85 9.25 -39.11 -0.36 -1.21 16
23 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16
24 H 0.07 1.46 6.26 -51.93 -0.32 1.13 16
25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16
27 H 0.07 1.34 5.86 -51.93 -0.30 1.04 16
28 H 0.01 0.13 6.00 -51.93 -0.31 -0.18 16
29 H 0.02 0.67 7.90 -51.93 -0.41 0.26 16
30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
31 H 0.06 1.02 6.00 -51.93 -0.31 0.71 16
32 H 0.10 1.69 7.86 -51.93 -0.41 1.28 16
33 H 0.13 1.38 7.05 -52.49 -0.37 1.01 16
34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16
38 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16
39 H 0.13 1.69 7.65 -52.49 -0.40 1.29 16
LS Contribution 319.18 15.07 4.81 4.81
Total: -1.00 -31.71 319.18 -8.74 -40.45
By element:
Atomic # 1 Polarization: 4.69 SS G_CDS: -5.59 Total: -0.90 kcal
Atomic # 6 Polarization: -11.52 SS G_CDS: -2.70 Total: -14.22 kcal
Atomic # 7 Polarization: -38.26 SS G_CDS: -0.32 Total: -38.57 kcal
Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -31.71 -8.74 -40.45 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000050148595.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.124 kcal
(2) G-P(sol) polarization free energy of solvation -31.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.323 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds