Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47193 * 2 1 4 4 C 1.46904 * 111.00017 * 297.51269 * 3 2 1 5 5 C 1.50704 * 109.46674 * 292.34795 * 4 3 2 6 6 H 1.07994 * 120.00253 * 354.95630 * 5 4 3 7 7 C 1.37877 * 119.99520 * 174.95711 * 5 4 3 8 8 N 1.31517 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99711 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47230 * 90.00386 * 9 7 5 11 11 H 1.48505 * 109.47106 * 210.00224 * 9 7 5 12 12 H 1.48499 * 109.47265 * 330.00203 * 9 7 5 13 13 C 1.46902 * 111.00086 * 61.46449 * 3 2 1 14 14 C 1.50695 * 109.47130 * 66.04544 * 13 3 2 15 15 O 1.21260 * 120.00114 * 0.02562 * 14 13 3 16 16 C 1.47172 * 120.00165 * 180.02562 * 14 13 3 17 17 C 1.39875 * 120.16780 * 0.27264 * 16 14 13 18 18 C 1.37868 * 119.82060 * 180.25100 * 17 16 14 19 19 C 1.38429 * 120.17218 * 359.45650 * 18 17 16 20 20 C 1.38382 * 120.34784 * 0.29701 * 19 18 17 21 21 C 1.50696 * 119.91179 * 179.97438 * 20 19 18 22 22 C 1.37908 * 120.17421 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.47026 * 299.08436 * 1 2 3 24 24 H 1.08994 * 109.47186 * 59.08699 * 1 2 3 25 25 H 1.09006 * 109.46850 * 179.08731 * 1 2 3 26 26 H 1.09001 * 109.46946 * 239.99935 * 2 1 3 27 27 H 1.09007 * 109.46853 * 120.00166 * 2 1 3 28 28 H 1.08998 * 109.47011 * 52.34830 * 4 3 2 29 29 H 1.08998 * 109.47309 * 172.34653 * 4 3 2 30 30 H 0.97000 * 119.99388 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46943 * 306.04705 * 13 3 2 32 32 H 1.09003 * 109.46968 * 186.04649 * 13 3 2 33 33 H 1.08001 * 120.09035 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.91387 * 179.73213 * 18 17 16 35 35 H 1.07998 * 119.82709 * 180.28146 * 19 18 17 36 36 H 1.09003 * 109.47675 * 89.99615 * 21 20 19 37 37 H 1.09003 * 109.47306 * 209.99905 * 21 20 19 38 38 H 1.09002 * 109.47028 * 329.99428 * 21 20 19 39 39 H 1.08002 * 120.08646 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5979 2.0925 -1.2164 5 6 2.3001 1.5001 -2.4110 6 1 3.0505 0.7360 -2.2722 7 6 1.9844 1.9338 -3.6812 8 7 1.0708 2.8647 -3.8501 9 14 2.8553 1.2001 -5.1619 10 1 2.0980 0.0180 -5.6460 11 1 2.9332 2.2149 -6.2433 12 1 4.2269 0.7842 -4.7736 13 6 1.5775 2.0997 1.2048 14 6 2.2291 1.4890 2.4187 15 8 2.9875 0.5512 2.2926 16 6 1.9451 2.0308 3.7573 17 6 1.0666 3.1088 3.9074 18 6 0.8097 3.6140 5.1642 19 6 1.4099 3.0500 6.2768 20 6 2.2763 1.9800 6.1370 21 6 2.9248 1.3740 7.3548 22 6 2.5478 1.4669 4.8860 23 1 -0.3633 0.4995 0.8981 24 1 -0.3633 0.5279 -0.8816 25 1 -0.3633 -1.0276 -0.0164 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.5199 1.9901 -1.3409 29 1 1.8550 3.1482 -1.1303 30 1 0.8485 3.1694 -4.7437 31 1 0.4941 2.0220 1.2963 32 1 1.8615 3.1493 1.1293 33 1 0.5941 3.5471 3.0407 34 1 0.1349 4.4490 5.2814 35 1 1.2012 3.4473 7.2591 36 1 2.2922 0.5765 7.7445 37 1 3.8981 0.9656 7.0829 38 1 3.0532 2.1416 8.1180 39 1 3.2245 0.6321 4.7785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050148595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = -28.277955 kcal Electronic energy + Delta-G solvation = -19150.541443 eV Core-core repulsion = 16250.379070 eV Total energy + Delta-G solvation = -2900.162374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21977 -39.59277 -38.07417 -34.72355 -33.99194 -32.24344 -31.27868 -30.14144 -27.95753 -27.03328 -25.01897 -24.46452 -22.71495 -21.59462 -20.01060 -18.36617 -18.02197 -17.07592 -16.81419 -16.61574 -16.39473 -16.01500 -15.45047 -15.23103 -14.84124 -14.55690 -14.41388 -14.20638 -13.98998 -13.49286 -13.14835 -13.03910 -12.96182 -12.82881 -12.70052 -12.59909 -12.56487 -12.42117 -12.00266 -11.94559 -11.58760 -11.37996 -10.59540 -10.49993 -9.93148 -9.65829 -8.92793 -8.19382 -6.27772 -0.29339 0.41020 1.40200 1.41005 1.46030 1.53011 2.40152 2.82548 2.85753 3.13066 3.45455 3.83676 3.98498 4.13801 4.20136 4.21476 4.26677 4.40489 4.41638 4.45113 4.51923 4.62744 4.78493 4.83770 4.88908 4.92546 4.97456 5.00281 5.20342 5.27618 5.32554 5.39683 5.45238 5.47425 5.58811 5.67750 5.98680 6.06928 6.32033 6.51243 6.70601 6.87724 7.41032 8.90865 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.003980 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.048640 B = 7033.972611 C = 7252.571789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 N -0.540 5.540 4 C 0.204 3.796 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.005 3.995 14 C 0.399 3.601 15 O -0.472 6.472 16 C -0.178 4.178 17 C -0.085 4.085 18 C -0.127 4.127 19 C -0.088 4.088 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.083 4.083 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.073 0.927 28 H -0.010 1.010 29 H 0.005 0.995 30 H 0.265 0.735 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 0.830 22.247 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.264 5.264 4 C 0.078 3.922 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.195 1.195 13 C -0.124 4.124 14 C 0.278 3.722 15 O -0.348 6.348 16 C -0.179 4.179 17 C -0.103 4.103 18 C -0.144 4.144 19 C -0.106 4.106 20 C -0.106 4.106 21 C -0.169 4.169 22 C -0.101 4.101 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.008 0.992 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.159 0.841 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.609 0.427 22.040 22.103 hybrid contribution -0.494 -0.182 -1.376 1.473 sum -2.102 0.246 20.664 20.772 Atomic orbital electron populations 1.22291 0.97854 1.02468 1.01154 1.22033 0.93103 0.90322 1.01563 1.62049 1.60056 1.02644 1.01649 1.19488 0.93629 0.92639 0.86457 1.21407 1.21407 1.21748 0.91503 0.92933 1.25787 0.95987 0.95558 1.01830 1.70055 1.33199 1.30556 1.23255 0.85472 0.78979 0.78186 0.78528 1.19825 1.20441 1.19548 1.22511 0.99597 1.00061 0.90198 1.22806 0.78119 0.81386 0.89877 1.90439 1.30086 1.25540 1.88727 1.20483 1.03028 1.00732 0.93692 1.21707 0.95197 0.93839 0.99571 1.21510 1.00514 1.00891 0.91501 1.21704 0.94253 0.94249 1.00373 1.20219 0.98476 0.97052 0.94847 1.20850 1.00266 1.01585 0.94226 1.21375 0.97988 0.98779 0.91968 0.92190 0.93879 0.91008 0.92532 0.90855 0.99237 0.97694 0.92662 0.90259 0.87410 0.84107 0.82409 0.82442 0.90150 0.91655 0.89429 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.06 2.48 5.55 86.31 0.48 2.96 16 3 N -0.54 -24.83 4.43 -905.35 -4.01 -28.83 16 4 C 0.20 10.88 4.54 85.56 0.39 11.27 16 5 C -0.52 -30.48 8.40 25.60 0.21 -30.27 16 6 H 0.05 3.12 7.42 -2.91 -0.02 3.10 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.00 0.17 3.84 85.55 0.33 0.50 16 14 C 0.40 13.79 6.83 28.03 0.19 13.99 16 15 O -0.47 -19.32 14.31 -2.97 -0.04 -19.36 16 16 C -0.18 -4.87 5.87 -20.15 -0.12 -4.99 16 17 C -0.08 -1.82 9.47 22.58 0.21 -1.61 16 18 C -0.13 -2.02 10.03 22.23 0.22 -1.80 16 19 C -0.09 -1.31 9.69 22.35 0.22 -1.09 16 20 C -0.11 -1.96 5.87 -19.91 -0.12 -2.07 16 21 C -0.11 -1.42 10.01 71.23 0.71 -0.71 16 22 C -0.08 -2.08 9.25 22.58 0.21 -1.87 16 23 H 0.06 1.97 6.35 -2.39 -0.02 1.95 16 24 H 0.04 1.83 6.26 -2.39 -0.01 1.81 16 25 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.06 2.66 7.01 -2.39 -0.02 2.65 16 27 H 0.07 3.04 5.86 -2.38 -0.01 3.03 16 28 H -0.01 -0.56 6.00 -2.39 -0.01 -0.57 16 29 H 0.00 0.28 7.90 -2.39 -0.02 0.26 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.08 2.59 6.00 -2.39 -0.01 2.57 16 32 H 0.11 3.69 7.86 -2.39 -0.02 3.67 16 33 H 0.14 2.70 7.05 -2.91 -0.02 2.68 16 34 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 39 H 0.12 3.19 7.65 -2.91 -0.02 3.16 16 Total: -1.00 -70.05 319.18 3.37 -66.69 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.03 Total: 10.39 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.07 Total: -20.85 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.72 Total: -84.27 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.05 3.37 -66.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050148595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.408 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds