Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47158 * 2 1 4 4 C 1.37094 * 120.00248 * 263.55762 * 3 2 1 5 5 H 1.08006 * 119.99980 * 188.38997 * 4 3 2 6 6 C 1.38948 * 120.00108 * 8.38636 * 4 3 2 7 7 N 1.31414 * 119.99768 * 25.17024 * 6 4 3 8 8 Si 1.86799 * 120.00220 * 205.16868 * 6 4 3 9 9 H 1.48496 * 109.47284 * 84.98932 * 8 6 4 10 10 H 1.48500 * 109.46964 * 204.98997 * 8 6 4 11 11 H 1.48496 * 109.47066 * 324.98562 * 8 6 4 12 12 C 1.34778 * 119.99789 * 83.55500 * 3 2 1 13 13 O 1.21293 * 120.00174 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99935 * 0.02562 * 12 3 2 15 15 C 1.53010 * 109.47112 * 179.97438 * 14 12 3 16 16 C 1.50692 * 109.47147 * 179.97438 * 15 14 12 17 17 C 1.38236 * 120.00164 * 90.00292 * 16 15 14 18 18 C 1.38234 * 120.00129 * 179.72906 * 17 16 15 19 19 C 1.38235 * 119.99978 * 0.24840 * 18 17 16 20 20 C 1.50703 * 119.99952 * 180.02562 * 19 18 17 21 21 C 1.38231 * 120.00250 * 0.02562 * 19 18 17 22 22 C 1.38237 * 120.00035 * 359.95981 * 21 19 18 23 23 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47327 * 300.00051 * 1 2 3 25 25 H 1.09003 * 109.46761 * 59.99949 * 1 2 3 26 26 H 1.08998 * 109.47327 * 239.99949 * 2 1 3 27 27 H 1.09000 * 109.47212 * 120.00294 * 2 1 3 28 28 H 0.97002 * 120.00200 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47610 * 59.99867 * 14 12 3 30 30 H 1.08999 * 109.46885 * 299.99276 * 14 12 3 31 31 H 1.09003 * 109.46820 * 59.99594 * 15 14 12 32 32 H 1.08995 * 109.46811 * 300.00048 * 15 14 12 33 33 H 1.08006 * 119.99932 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.99908 * 180.27908 * 18 17 16 35 35 H 1.09003 * 109.47186 * 89.99723 * 20 19 18 36 36 H 1.08994 * 109.47011 * 210.00367 * 20 19 18 37 37 H 1.09004 * 109.47122 * 330.00346 * 20 19 18 38 38 H 1.07997 * 120.00011 * 179.97438 * 21 19 18 39 39 H 1.07997 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1797 5 1 2.8580 2.9478 -1.1694 6 6 2.1068 1.3520 -2.3888 7 7 1.1283 0.4789 -2.4732 8 14 3.1405 1.7448 -3.8943 9 1 4.3646 0.9042 -3.8873 10 1 2.3538 1.4634 -5.1220 11 1 3.5247 3.1790 -3.8706 12 6 2.1194 2.0602 1.1599 13 8 2.5242 3.2036 1.1600 14 6 1.7307 1.3984 2.4567 15 6 1.9395 2.3791 3.6125 16 6 1.5502 1.7175 4.9092 17 6 2.4930 1.0172 5.6383 18 6 2.1372 0.4150 6.8306 19 6 0.8373 0.5089 7.2914 20 6 0.4495 -0.1471 8.5916 21 6 -0.1069 1.2044 6.5596 22 6 0.2489 1.8068 5.3674 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 0.9430 0.0380 -3.3171 29 1 2.3498 0.5151 2.6139 30 1 0.6820 1.1042 2.4144 31 1 1.3207 3.2626 3.4555 32 1 2.9883 2.6729 3.6546 33 1 3.5087 0.9438 5.2782 34 1 2.8749 -0.1283 7.4024 35 1 0.5978 0.5557 9.4115 36 1 -0.5989 -0.4424 8.5510 37 1 1.0695 -1.0291 8.7526 38 1 -1.1226 1.2773 6.9194 39 1 -0.4887 2.3505 4.7959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050164699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -18.218669 kcal Electronic energy + Delta-G solvation = -19176.959274 eV Core-core repulsion = 16277.233104 eV Total energy + Delta-G solvation = -2899.726170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45208 -38.46617 -35.20810 -34.15658 -31.87065 -30.82769 -30.75824 -29.34509 -27.05445 -24.89340 -23.02916 -22.61375 -22.02772 -20.46152 -18.60449 -16.82716 -16.35581 -15.56968 -15.51066 -14.93308 -14.44273 -14.31737 -14.10821 -13.80519 -13.33359 -12.96592 -12.77395 -12.62025 -12.50679 -12.25105 -11.95601 -11.74675 -11.34881 -11.16770 -11.04941 -10.94386 -10.82990 -10.69172 -10.45686 -10.28332 -10.07238 -9.77624 -8.86457 -8.83108 -8.48520 -8.18362 -7.71968 -6.32894 -3.73912 1.43120 1.49702 3.17905 3.27734 3.32524 3.82798 3.94381 4.16365 4.80735 4.86054 4.91862 5.09101 5.10481 5.23238 5.24037 5.46686 5.58890 5.64289 5.68350 5.76167 5.78808 5.89999 6.04242 6.12047 6.20437 6.33027 6.37638 6.53358 6.61114 6.64037 6.66184 6.68302 6.80405 6.89521 7.12872 7.29505 7.49955 7.76316 8.13815 8.55322 9.22766 9.49941 10.05739 10.67939 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040717 B = 0.004008 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.503048 B = 6984.700780 C = 7280.206988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 N -0.443 5.443 4 C -0.307 4.307 5 H 0.104 0.896 6 C 0.029 3.971 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.441 3.559 13 O -0.596 6.596 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.075 4.075 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.031 0.969 28 H 0.266 0.734 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -4.454 15.293 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 N -0.161 5.161 4 C -0.435 4.435 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.230 3.770 13 O -0.482 6.482 14 C -0.162 4.162 15 C -0.101 4.101 16 C -0.075 4.075 17 C -0.133 4.133 18 C -0.138 4.138 19 C -0.102 4.102 20 C -0.168 4.168 21 C -0.138 4.138 22 C -0.132 4.132 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.917 -4.028 15.111 15.756 hybrid contribution 0.296 -0.110 -0.842 0.899 sum -1.621 -4.138 14.269 14.945 Atomic orbital electron populations 1.22118 0.96763 0.99765 1.01985 1.21430 0.94467 0.83749 1.00652 1.43840 1.55437 1.11251 1.05597 1.19734 1.35993 1.05494 0.82271 0.87869 1.25174 0.96032 0.97242 0.98866 1.70118 1.25019 1.28926 1.26615 0.86075 0.79993 0.79161 0.80319 1.20427 1.21181 1.19527 1.19979 0.85049 0.86898 0.85120 1.90497 1.52144 1.18555 1.87029 1.21530 1.02441 0.98773 0.93422 1.20328 1.02876 0.97611 0.89247 1.20123 0.93519 0.97247 0.96580 1.21091 0.99545 0.97741 0.94885 1.20980 0.95664 1.00595 0.96599 1.19853 0.93946 0.99298 0.97088 1.20750 1.01717 0.99940 0.94364 1.20985 0.98975 0.98546 0.95285 1.21105 0.95993 0.99918 0.96174 0.94438 0.95715 0.89023 0.88140 0.95022 0.92350 0.90787 0.90268 0.90540 0.90573 0.86050 0.86436 0.91542 0.91789 0.91803 0.86416 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.64 37.16 0.36 -2.76 16 2 C 0.12 2.72 5.07 -4.04 -0.02 2.70 16 3 N -0.44 -11.38 2.64 -114.81 -0.30 -11.68 16 4 C -0.31 -8.58 9.43 -14.94 -0.14 -8.72 16 5 H 0.10 3.06 7.31 -52.48 -0.38 2.68 16 6 C 0.03 0.77 4.90 -17.47 -0.09 0.68 16 7 N -0.87 -22.26 8.65 55.50 0.48 -21.79 16 8 Si 0.92 20.58 29.62 -169.99 -5.04 15.54 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.44 10.85 7.58 -10.99 -0.08 10.76 16 13 O -0.60 -16.63 15.57 5.55 0.09 -16.54 16 14 C -0.12 -2.29 4.29 -27.88 -0.12 -2.41 16 15 C -0.06 -1.07 4.63 -27.88 -0.13 -1.20 16 16 C -0.07 -1.09 5.13 -104.62 -0.54 -1.63 16 17 C -0.11 -1.53 9.70 -39.58 -0.38 -1.91 16 18 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 19 C -0.10 -1.16 5.88 -104.62 -0.62 -1.78 16 20 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 21 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 22 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.48 6.45 -51.93 -0.34 0.15 16 25 H 0.09 2.21 6.38 -51.93 -0.33 1.88 16 26 H 0.10 2.44 5.83 -51.93 -0.30 2.13 16 27 H 0.03 0.62 6.71 -51.93 -0.35 0.28 16 28 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 29 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.08 1.44 6.41 -51.93 -0.33 1.10 16 31 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 32 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -29.99 318.77 -8.28 -38.27 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.77 Total: 3.79 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.55 Total: -12.39 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.18 Total: -33.47 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.04 Total: 15.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.99 -8.28 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050164699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.049 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds