Wall clock time and date at job start Mon Mar 30 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47158 * 2 1 4 4 C 1.37094 * 120.00248 * 263.55762 * 3 2 1 5 5 H 1.08006 * 119.99980 * 188.38997 * 4 3 2 6 6 C 1.38948 * 120.00108 * 8.38636 * 4 3 2 7 7 N 1.31414 * 119.99768 * 25.17024 * 6 4 3 8 8 Si 1.86799 * 120.00220 * 205.16868 * 6 4 3 9 9 H 1.48496 * 109.47284 * 84.98932 * 8 6 4 10 10 H 1.48500 * 109.46964 * 204.98997 * 8 6 4 11 11 H 1.48496 * 109.47066 * 324.98562 * 8 6 4 12 12 C 1.34778 * 119.99789 * 83.55500 * 3 2 1 13 13 O 1.21293 * 120.00174 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99935 * 0.02562 * 12 3 2 15 15 C 1.53010 * 109.47112 * 179.97438 * 14 12 3 16 16 C 1.50692 * 109.47147 * 179.97438 * 15 14 12 17 17 C 1.38236 * 120.00164 * 90.00292 * 16 15 14 18 18 C 1.38234 * 120.00129 * 179.72906 * 17 16 15 19 19 C 1.38235 * 119.99978 * 0.24840 * 18 17 16 20 20 C 1.50703 * 119.99952 * 180.02562 * 19 18 17 21 21 C 1.38231 * 120.00250 * 0.02562 * 19 18 17 22 22 C 1.38237 * 120.00035 * 359.95981 * 21 19 18 23 23 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47327 * 300.00051 * 1 2 3 25 25 H 1.09003 * 109.46761 * 59.99949 * 1 2 3 26 26 H 1.08998 * 109.47327 * 239.99949 * 2 1 3 27 27 H 1.09000 * 109.47212 * 120.00294 * 2 1 3 28 28 H 0.97002 * 120.00200 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47610 * 59.99867 * 14 12 3 30 30 H 1.08999 * 109.46885 * 299.99276 * 14 12 3 31 31 H 1.09003 * 109.46820 * 59.99594 * 15 14 12 32 32 H 1.08995 * 109.46811 * 300.00048 * 15 14 12 33 33 H 1.08006 * 119.99932 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.99908 * 180.27908 * 18 17 16 35 35 H 1.09003 * 109.47186 * 89.99723 * 20 19 18 36 36 H 1.08994 * 109.47011 * 210.00367 * 20 19 18 37 37 H 1.09004 * 109.47122 * 330.00346 * 20 19 18 38 38 H 1.07997 * 120.00011 * 179.97438 * 21 19 18 39 39 H 1.07997 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1797 5 1 2.8580 2.9478 -1.1694 6 6 2.1068 1.3520 -2.3888 7 7 1.1283 0.4789 -2.4732 8 14 3.1405 1.7448 -3.8943 9 1 4.3646 0.9042 -3.8873 10 1 2.3538 1.4634 -5.1220 11 1 3.5247 3.1790 -3.8706 12 6 2.1194 2.0602 1.1599 13 8 2.5242 3.2036 1.1600 14 6 1.7307 1.3984 2.4567 15 6 1.9395 2.3791 3.6125 16 6 1.5502 1.7175 4.9092 17 6 2.4930 1.0172 5.6383 18 6 2.1372 0.4150 6.8306 19 6 0.8373 0.5089 7.2914 20 6 0.4495 -0.1471 8.5916 21 6 -0.1069 1.2044 6.5596 22 6 0.2489 1.8068 5.3674 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 0.9430 0.0380 -3.3171 29 1 2.3498 0.5151 2.6139 30 1 0.6820 1.1042 2.4144 31 1 1.3207 3.2626 3.4555 32 1 2.9883 2.6729 3.6546 33 1 3.5087 0.9438 5.2782 34 1 2.8749 -0.1283 7.4024 35 1 0.5978 0.5557 9.4115 36 1 -0.5989 -0.4424 8.5510 37 1 1.0695 -1.0291 8.7526 38 1 -1.1226 1.2773 6.9194 39 1 -0.4887 2.3505 4.7959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050164699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:41 Heat of formation + Delta-G solvation = -33.244377 kcal Electronic energy + Delta-G solvation = -19177.610838 eV Core-core repulsion = 16277.233104 eV Total energy + Delta-G solvation = -2900.377734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72208 -40.06446 -37.10266 -35.41048 -33.81389 -32.01348 -31.76633 -31.15051 -28.30012 -26.59521 -24.46667 -23.74754 -23.55421 -21.51982 -20.42344 -18.79489 -18.04228 -16.81418 -16.73219 -16.35740 -15.99049 -15.83851 -15.75495 -14.71308 -14.56866 -14.45164 -14.28434 -14.14864 -13.74905 -13.50751 -13.24408 -13.10762 -12.93853 -12.83504 -12.62661 -12.39387 -12.18691 -12.10710 -11.95176 -11.81833 -11.73015 -11.52982 -10.82516 -10.31355 -9.78097 -9.70634 -9.31888 -8.33419 -5.83188 0.45465 0.54704 1.36417 1.42719 1.53096 2.03983 2.29086 2.84483 3.05830 3.15187 3.81867 3.93366 4.11354 4.20029 4.20902 4.24405 4.35954 4.42620 4.54306 4.64828 4.73610 4.83304 4.89519 4.89716 4.91512 5.01245 5.04014 5.14622 5.22789 5.27232 5.36378 5.43445 5.49735 5.57187 5.74948 5.81527 5.90357 6.09761 6.18611 6.55262 7.20507 7.53264 8.09644 8.64957 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040717 B = 0.004008 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.503048 B = 6984.700780 C = 7280.206988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.121 3.879 3 N -0.454 5.454 4 C -0.354 4.354 5 H 0.070 0.930 6 C 0.005 3.995 7 N -0.868 5.868 8 Si 0.980 3.020 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.426 3.574 13 O -0.642 6.642 14 C -0.105 4.105 15 C -0.052 4.052 16 C -0.094 4.094 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.125 4.125 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.274 0.726 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -6.509 16.708 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.002 4.002 3 N -0.172 5.172 4 C -0.482 4.482 5 H 0.088 0.912 6 C -0.198 4.198 7 N -0.506 5.506 8 Si 0.804 3.196 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.216 3.784 13 O -0.531 6.531 14 C -0.145 4.145 15 C -0.090 4.090 16 C -0.094 4.094 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.167 4.167 21 C -0.142 4.142 22 C -0.143 4.143 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.518 -6.125 16.527 17.804 hybrid contribution 0.432 0.504 -1.260 1.424 sum -2.086 -5.621 15.267 16.402 Atomic orbital electron populations 1.21964 0.95601 1.01221 1.00804 1.21515 0.95377 0.82144 1.01186 1.44088 1.55350 1.12396 1.05350 1.19586 1.38684 1.05655 0.84260 0.91194 1.25839 0.96332 0.96878 1.00711 1.70191 1.24471 1.28336 1.27590 0.85169 0.78740 0.78392 0.77319 1.19466 1.19692 1.20554 1.20978 0.84108 0.86655 0.86630 1.90453 1.54007 1.20708 1.87915 1.21437 1.03117 0.99192 0.90724 1.20137 1.01741 0.96850 0.90270 1.19897 0.94607 0.98916 0.95956 1.21231 0.99562 0.97841 0.95570 1.21285 0.96598 1.00241 0.96063 1.20290 0.93566 0.98233 0.97958 1.20815 1.02625 1.00388 0.92829 1.21274 1.00334 0.98025 0.94600 1.21226 0.95592 1.00410 0.97116 0.91558 0.94710 0.92318 0.89996 0.91944 0.91631 0.88947 0.89118 0.92256 0.91900 0.85638 0.84071 0.90379 0.90717 0.90637 0.84208 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.64 71.98 0.69 -4.95 16 2 C 0.12 5.35 5.07 86.38 0.44 5.78 16 3 N -0.45 -23.86 2.64 -635.54 -1.68 -25.53 16 4 C -0.35 -20.51 9.43 84.04 0.79 -19.72 16 5 H 0.07 4.42 7.31 -2.91 -0.02 4.40 16 6 C 0.01 0.29 4.90 84.93 0.42 0.70 16 7 N -0.87 -44.31 8.65 21.66 0.19 -44.13 16 8 Si 0.98 42.41 29.62 68.60 2.03 44.45 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.43 21.60 7.58 87.66 0.66 22.26 16 13 O -0.64 -37.69 15.57 -3.07 -0.05 -37.74 16 14 C -0.10 -3.95 4.29 29.85 0.13 -3.82 16 15 C -0.05 -1.81 4.63 29.85 0.14 -1.68 16 16 C -0.09 -2.69 5.13 -19.87 -0.10 -2.79 16 17 C -0.12 -3.15 9.70 22.27 0.22 -2.93 16 18 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 19 C -0.10 -1.99 5.88 -19.87 -0.12 -2.10 16 20 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 21 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 22 C -0.13 -3.26 9.70 22.27 0.22 -3.04 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.03 1.32 6.45 -2.39 -0.02 1.30 16 25 H 0.06 2.81 6.38 -2.39 -0.02 2.79 16 26 H 0.08 3.93 5.83 -2.39 -0.01 3.92 16 27 H 0.06 2.35 6.71 -2.39 -0.02 2.34 16 28 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 29 H 0.09 3.13 7.42 -2.39 -0.02 3.11 16 30 H 0.09 3.21 6.41 -2.39 -0.02 3.19 16 31 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 32 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 33 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -66.72 318.77 6.15 -60.58 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.03 Total: 20.23 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.63 Total: -17.85 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.49 Total: -69.66 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.05 Total: -37.74 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.45 kcal Total: -66.72 6.15 -60.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050164699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.331 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds