Wall clock time and date at job start Mon Mar 30 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.50572 * 2 1 4 4 C 1.53099 * 109.50902 * 239.91480 * 2 1 3 5 5 N 1.47009 * 109.25581 * 183.16997 * 4 2 1 6 6 C 1.46908 * 110.99560 * 182.39028 * 5 4 2 7 7 H 1.08995 * 109.47340 * 300.00071 * 6 5 4 8 8 C 1.50695 * 109.47051 * 60.00357 * 6 5 4 9 9 H 1.08008 * 120.00078 * 35.13804 * 8 6 5 10 10 C 1.37877 * 120.00113 * 215.14302 * 8 6 5 11 11 N 1.31516 * 119.99728 * 6.39132 * 10 8 6 12 12 Si 1.86802 * 120.00263 * 186.40121 * 10 8 6 13 13 H 1.48494 * 109.46869 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47466 * 119.99543 * 12 10 8 15 15 H 1.48505 * 109.46784 * 239.99745 * 12 10 8 16 16 C 1.50696 * 109.46889 * 180.02562 * 6 5 4 17 17 C 1.38244 * 120.00304 * 313.85430 * 16 6 5 18 18 C 1.38231 * 120.00009 * 179.78657 * 17 16 6 19 19 C 1.38237 * 120.00163 * 0.44410 * 18 17 16 20 20 C 1.38235 * 119.99577 * 359.80952 * 19 18 17 21 21 C 1.38226 * 120.00457 * 359.97438 * 20 19 18 22 22 C 1.47011 * 110.75587 * 58.61932 * 5 4 2 23 23 C 1.53105 * 109.25379 * 301.38306 * 22 5 4 24 24 O 1.43009 * 109.25929 * 56.84538 * 23 22 5 25 25 H 1.08993 * 109.46922 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46809 * 299.99933 * 1 2 3 27 27 H 1.08996 * 109.46736 * 60.00199 * 1 2 3 28 28 H 1.09001 * 109.50253 * 303.10951 * 4 2 1 29 29 H 1.09000 * 109.50404 * 63.23420 * 4 2 1 30 30 H 0.97003 * 119.99663 * 180.02562 * 11 10 8 31 31 H 1.08001 * 119.99241 * 359.97438 * 17 16 6 32 32 H 1.08000 * 119.99725 * 180.26682 * 18 17 16 33 33 H 1.07994 * 120.00242 * 179.82916 * 19 18 17 34 34 H 1.08006 * 119.99568 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00148 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.50830 * 61.30986 * 22 5 4 37 37 H 1.08996 * 109.51242 * 181.44356 * 22 5 4 38 38 H 1.08998 * 109.50746 * 176.78472 * 23 22 5 39 39 H 1.08997 * 109.50392 * 296.86540 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2487 5 7 3.5094 -0.7869 -1.2052 6 6 4.0448 -1.4249 -2.4154 7 1 3.6533 -2.4390 -2.4951 8 6 3.6312 -0.6301 -3.6271 9 1 3.5606 0.4461 -3.5687 10 6 3.3428 -1.2767 -4.8102 11 7 3.3058 -2.5908 -4.8493 12 14 3.0049 -0.2864 -6.3576 13 1 3.1067 1.1627 -6.0499 14 1 4.0003 -0.6425 -7.4005 15 1 1.6385 -0.5922 -6.8524 16 6 5.5488 -1.4725 -2.3347 17 6 6.2559 -0.3509 -1.9436 18 6 7.6353 -0.3959 -1.8653 19 6 8.3082 -1.5598 -2.1869 20 6 7.6014 -2.6798 -2.5831 21 6 6.2218 -2.6362 -2.6571 22 6 3.9650 -1.4868 0.0047 23 6 3.4344 -0.7557 1.2408 24 8 2.0085 -0.6760 1.1659 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6339 -1.7340 -1.2762 29 1 1.7267 -0.1790 -2.1391 30 1 3.1033 -3.0457 -5.6817 31 1 5.7304 0.5596 -1.6963 32 1 8.1874 0.4791 -1.5556 33 1 9.3860 -1.5942 -2.1285 34 1 8.1272 -3.5891 -2.8348 35 1 5.6696 -3.5113 -2.9662 36 1 3.5883 -2.5096 -0.0028 37 1 5.0546 -1.4997 0.0293 38 1 3.7217 -1.3029 2.1386 39 1 3.8543 0.2495 1.2774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:41 Heat of formation + Delta-G solvation = -19.246055 kcal Electronic energy + Delta-G solvation = -20308.242508 eV Core-core repulsion = 17408.471787 eV Total energy + Delta-G solvation = -2899.770721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.26186 -38.13877 -35.28857 -32.62409 -32.32818 -30.52131 -30.00309 -28.22836 -26.32217 -24.94128 -22.58291 -22.11473 -21.61343 -20.02426 -19.39612 -16.59153 -15.97502 -15.81718 -15.63988 -14.81225 -14.39160 -14.32893 -14.04770 -13.91038 -13.48492 -12.90521 -12.53795 -12.34870 -12.12190 -12.05280 -11.96117 -11.53433 -11.32640 -11.07544 -10.91660 -10.74011 -10.64324 -10.35667 -10.23311 -10.06761 -9.69777 -9.40105 -9.01359 -8.62678 -8.06474 -7.69914 -7.30338 -6.17516 -4.20734 2.26767 2.29447 3.22197 3.30984 3.35187 4.17843 4.29774 4.61405 4.91649 5.16122 5.38098 5.52027 5.62780 5.64143 5.68054 5.72774 5.75215 5.82284 5.93670 5.95569 6.13713 6.20030 6.27111 6.38674 6.40567 6.45255 6.49994 6.63739 6.78080 6.86527 6.96217 7.25338 7.30427 7.36489 7.62732 7.68748 7.72277 7.79016 8.00750 8.09721 8.43445 8.91709 9.43074 10.88720 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.009911 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.372719 B = 2824.528219 C = 4441.599946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.060 0.940 4 C 0.044 3.956 5 N -0.531 5.531 6 C 0.232 3.768 7 H 0.043 0.957 8 C -0.497 4.497 9 H 0.065 0.935 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.895 3.105 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.284 1.284 16 C -0.025 4.025 17 C -0.104 4.104 18 C -0.135 4.135 19 C -0.152 4.152 20 C -0.130 4.130 21 C -0.118 4.118 22 C 0.014 3.986 23 C 0.069 3.931 24 O -0.392 6.392 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 2.542 7.694 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.078 0.922 4 C -0.085 4.085 5 N -0.256 5.256 6 C 0.126 3.874 7 H 0.061 0.939 8 C -0.536 4.536 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.522 5.522 12 Si 0.722 3.278 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.026 4.026 17 C -0.122 4.122 18 C -0.153 4.153 19 C -0.170 4.170 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.008 4.008 24 O -0.312 6.312 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.479 2.785 7.713 8.333 hybrid contribution -0.063 -0.390 -1.352 1.409 sum 1.416 2.396 6.361 6.943 Atomic orbital electron populations 1.21714 0.93681 1.02563 1.01910 1.22247 0.94095 0.95584 0.85241 0.92234 1.22492 0.88775 0.99358 0.97835 1.62382 1.07987 1.53050 1.02228 1.18528 0.86313 0.95919 0.86600 0.93875 1.20937 1.45264 0.93667 0.93684 0.91664 1.24998 0.94459 0.94938 0.99257 1.69920 1.48026 1.07244 1.27016 0.86484 0.77779 0.80561 0.82954 1.19447 1.20865 1.20960 1.20490 0.97995 0.91759 0.92338 1.20974 0.92854 0.98742 0.99652 1.21010 0.94854 0.97324 1.02148 1.20819 0.98524 0.94049 1.03642 1.20961 0.94510 0.97830 1.01501 1.21088 0.93648 0.98606 1.00340 1.22723 1.00839 0.95917 0.91955 1.22569 0.80999 0.99832 0.97412 1.87875 1.21173 1.78750 1.43378 0.92165 0.92411 0.91029 0.95208 0.88683 0.92684 0.86277 0.87592 0.87753 0.87590 0.86578 0.95269 0.90298 0.89650 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 37.16 0.36 -1.62 16 2 C 0.09 1.45 3.42 -26.68 -0.09 1.36 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.04 0.88 4.70 -3.71 -0.02 0.86 16 5 N -0.53 -11.10 4.11 -229.12 -0.94 -12.04 16 6 C 0.23 5.52 1.83 -70.02 -0.13 5.40 16 7 H 0.04 1.17 7.02 -51.93 -0.36 0.81 16 8 C -0.50 -12.87 6.97 -34.44 -0.24 -13.11 16 9 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 10 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 11 N -0.88 -24.30 12.76 55.43 0.71 -23.59 16 12 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C -0.02 -0.55 3.54 -104.62 -0.37 -0.92 16 17 C -0.10 -2.11 8.46 -39.58 -0.33 -2.45 16 18 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 19 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 20 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 21 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16 22 C 0.01 0.27 5.29 -3.71 -0.02 0.25 16 23 C 0.07 1.11 7.01 37.21 0.26 1.37 16 24 O -0.39 -6.88 10.47 -35.23 -0.37 -7.25 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 31 H 0.12 2.42 7.91 -52.49 -0.42 2.01 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.12 2.61 7.99 -52.49 -0.42 2.19 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.46 6.36 -51.93 -0.33 1.13 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -27.56 315.98 -9.21 -36.77 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.09 Total: 4.42 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.26 Total: -18.77 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.23 Total: -35.63 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.37 Total: -7.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.56 -9.21 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.527 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds