Wall clock time and date at job start Mon Mar 30 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.54284 * 2 1 4 4 C 1.53093 * 109.51016 * 120.11481 * 2 1 3 5 5 N 1.47012 * 109.25879 * 176.78100 * 4 2 1 6 6 C 1.46898 * 110.99768 * 177.60521 * 5 4 2 7 7 H 1.08995 * 109.47412 * 56.15977 * 6 5 4 8 8 C 1.50706 * 109.47234 * 176.15773 * 6 5 4 9 9 H 1.07996 * 119.99868 * 234.83481 * 8 6 5 10 10 C 1.37880 * 119.99705 * 54.82613 * 8 6 5 11 11 N 1.31515 * 120.00168 * 350.08164 * 10 8 6 12 12 Si 1.86793 * 119.99757 * 170.08123 * 10 8 6 13 13 H 1.48506 * 109.47334 * 90.00132 * 12 10 8 14 14 H 1.48509 * 109.46918 * 210.00024 * 12 10 8 15 15 H 1.48502 * 109.47474 * 330.00192 * 12 10 8 16 16 C 1.50701 * 109.47572 * 296.15568 * 6 5 4 17 17 C 1.38235 * 119.99936 * 148.66828 * 16 6 5 18 18 C 1.38233 * 119.99786 * 179.81073 * 17 16 6 19 19 C 1.38240 * 120.00351 * 0.42921 * 18 17 16 20 20 C 1.38237 * 119.99391 * 359.80614 * 19 18 17 21 21 C 1.38229 * 119.99808 * 328.95273 * 16 6 5 22 22 C 1.47012 * 110.78881 * 301.40735 * 5 4 2 23 23 C 1.53093 * 109.25633 * 58.55211 * 22 5 4 24 24 O 1.43014 * 109.29382 * 303.21189 * 23 22 5 25 25 H 1.08997 * 109.47045 * 180.10862 * 1 2 3 26 26 H 1.09006 * 109.46414 * 300.10305 * 1 2 3 27 27 H 1.08999 * 109.47100 * 60.09750 * 1 2 3 28 28 H 1.09004 * 109.50596 * 296.71978 * 4 2 1 29 29 H 1.09003 * 109.50794 * 56.80137 * 4 2 1 30 30 H 0.96996 * 120.00246 * 180.02562 * 11 10 8 31 31 H 1.07997 * 119.99918 * 0.02562 * 17 16 6 32 32 H 1.08002 * 120.00268 * 180.21277 * 18 17 16 33 33 H 1.07997 * 120.00616 * 179.78705 * 19 18 17 34 34 H 1.08002 * 119.99668 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.00577 * 359.97121 * 21 16 6 36 36 H 1.09000 * 109.47363 * 298.63875 * 22 5 4 37 37 H 1.08999 * 109.54472 * 178.50873 * 22 5 4 38 38 H 1.09000 * 109.50747 * 183.26323 * 23 22 5 39 39 H 1.08996 * 109.51117 * 63.17017 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2482 5 7 3.5094 -0.7886 1.2042 6 6 4.0447 -1.4271 2.4140 7 1 3.6002 -2.4154 2.5303 8 6 5.5408 -1.5606 2.2915 9 1 6.0082 -2.5269 2.4099 10 6 6.3129 -0.4489 2.0281 11 7 5.7390 0.6855 1.6915 12 14 8.1739 -0.5543 2.1493 13 1 8.7343 -0.9486 0.8318 14 1 8.7200 0.7693 2.5434 15 1 8.5470 -1.5673 3.1691 16 6 3.7127 -0.5822 3.6169 17 6 3.5015 -1.1807 4.8449 18 6 3.2008 -0.4054 5.9491 19 6 3.1026 0.9678 5.8235 20 6 3.3091 1.5659 4.5945 21 6 3.6137 0.7908 3.4910 22 6 3.9648 -1.4878 -0.0061 23 6 3.4334 -0.7567 -1.2418 24 8 2.0075 -0.6761 -1.1663 25 1 -0.3633 -1.0276 0.0019 26 1 -0.3632 0.5155 0.8891 27 1 -0.3633 0.5123 -0.8908 28 1 1.7274 -0.1797 2.1390 29 1 1.6326 -1.7341 1.2762 30 1 6.2821 1.4674 1.5059 31 1 3.5747 -2.2538 4.9423 32 1 3.0391 -0.8726 6.9093 33 1 2.8643 1.5733 6.6855 34 1 3.2320 2.6387 4.4962 35 1 3.7747 1.2582 2.5308 36 1 3.5881 -2.5106 0.0016 37 1 5.0545 -1.5008 -0.0315 38 1 3.7200 -1.3040 -2.1398 39 1 3.8533 0.2485 -1.2786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:42 Heat of formation + Delta-G solvation = -19.151826 kcal Electronic energy + Delta-G solvation = -20748.786438 eV Core-core repulsion = 17849.019803 eV Total energy + Delta-G solvation = -2899.766635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70793 -39.49930 -36.88504 -34.22489 -33.50380 -32.17758 -31.34260 -29.14979 -28.65973 -25.85242 -24.65738 -23.29611 -22.79731 -21.57615 -21.01104 -18.32911 -17.34907 -17.16103 -16.93122 -16.67253 -15.80350 -15.76540 -15.50506 -15.31844 -14.88981 -14.37508 -14.10908 -13.72274 -13.65523 -13.41294 -13.18860 -13.07688 -12.84371 -12.63784 -12.52955 -12.24631 -12.13464 -11.95730 -11.78578 -11.52758 -11.15209 -11.00489 -10.47803 -10.34399 -9.45599 -9.11580 -8.65284 -7.89388 -6.13181 0.82078 0.95165 1.40205 1.45317 1.51377 2.45936 2.91506 3.13596 3.34082 3.49646 4.03364 4.25783 4.31090 4.32910 4.35883 4.37857 4.43562 4.54623 4.64115 4.72137 4.77600 4.82711 4.85712 4.93950 5.01349 5.07933 5.18808 5.24690 5.32265 5.35692 5.47610 5.62429 5.73772 5.86769 5.98342 6.15393 6.30966 6.33631 6.53367 6.57263 6.81834 7.06292 7.53272 9.01168 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.010751 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.259824 B = 2603.680562 C = 3965.472557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.092 3.908 3 H 0.054 0.946 4 C 0.026 3.974 5 N -0.493 5.493 6 C 0.248 3.752 7 H -0.023 1.023 8 C -0.551 4.551 9 H 0.041 0.959 10 C 0.062 3.938 11 N -0.830 5.830 12 Si 0.925 3.075 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.050 4.050 17 C -0.153 4.153 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.083 4.083 22 C 0.050 3.950 23 C 0.074 3.926 24 O -0.400 6.400 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.255 0.745 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.003 0.997 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 1.477 0.447 7.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.034 3.966 3 H 0.072 0.928 4 C -0.103 4.103 5 N -0.218 5.218 6 C 0.142 3.858 7 H -0.006 1.006 8 C -0.589 4.589 9 H 0.060 0.940 10 C -0.146 4.146 11 N -0.463 5.463 12 Si 0.752 3.248 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.208 1.208 16 C -0.051 4.051 17 C -0.171 4.171 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.102 4.102 22 C -0.079 4.079 23 C -0.002 4.002 24 O -0.320 6.320 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.021 0.979 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.137 2.087 0.222 7.439 hybrid contribution 1.400 -1.024 0.383 1.776 sum -5.737 1.064 0.605 5.866 Atomic orbital electron populations 1.21715 0.91103 1.02870 1.03425 1.22183 0.95768 0.94779 0.83825 0.92794 1.22790 0.90681 0.97871 0.98980 1.62224 1.04639 1.53096 1.01800 1.18142 0.93859 0.88017 0.85789 1.00555 1.20857 0.91009 0.94078 1.52993 0.94046 1.25261 1.00124 0.95352 0.93861 1.70189 1.34684 1.00640 1.40751 0.86104 0.83486 0.77056 0.78128 1.20227 1.21083 1.20755 1.20235 0.94323 0.95265 0.95246 1.21087 1.02999 0.99484 0.93571 1.21154 1.01804 0.94282 0.98170 1.21218 1.02586 0.94903 0.97599 1.21437 1.01988 0.99906 0.93644 1.21462 0.95446 0.93415 0.99836 1.22297 1.01272 0.93343 0.90942 1.22629 0.80069 0.99992 0.97548 1.87841 1.21901 1.78791 1.43419 0.92231 0.89732 0.90777 0.91047 0.97257 0.93518 0.87630 0.84669 0.84468 0.85918 0.84770 0.97876 0.90575 0.87414 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.57 71.98 0.69 -2.85 16 2 C 0.09 3.22 3.43 30.63 0.10 3.33 16 3 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.03 1.02 4.57 86.31 0.39 1.41 16 5 N -0.49 -22.37 2.41 -878.81 -2.11 -24.48 16 6 C 0.25 12.21 1.94 43.43 0.08 12.29 16 7 H -0.02 -1.19 8.07 -2.39 -0.02 -1.21 16 8 C -0.55 -29.11 7.18 25.60 0.18 -28.93 16 9 H 0.04 2.25 7.83 -2.91 -0.02 2.23 16 10 C 0.06 3.16 4.65 84.66 0.39 3.55 16 11 N -0.83 -42.55 9.36 21.45 0.20 -42.34 16 12 Si 0.93 41.80 29.55 68.60 2.03 43.83 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 16 C -0.05 -2.29 3.90 -19.87 -0.08 -2.37 16 17 C -0.15 -6.35 9.70 22.27 0.22 -6.14 16 18 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 19 C -0.15 -4.91 10.05 22.27 0.22 -4.69 16 20 C -0.15 -5.76 10.05 22.27 0.22 -5.54 16 21 C -0.08 -3.70 6.92 22.27 0.15 -3.55 16 22 C 0.05 2.18 5.28 86.31 0.46 2.63 16 23 C 0.07 2.76 7.01 72.01 0.50 3.27 16 24 O -0.40 -14.84 10.47 -148.98 -1.56 -16.40 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.87 6.37 -2.38 -0.02 2.85 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 31 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 33 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.13 6.58 5.80 -2.91 -0.02 6.56 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.08 3.65 6.42 -2.39 -0.02 3.63 16 38 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -56.26 307.55 3.34 -52.92 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.01 Total: 18.61 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.77 Total: -32.13 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.91 Total: -66.83 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.56 Total: -16.40 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -56.26 3.34 -52.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.767 kcal (2) G-P(sol) polarization free energy of solvation -56.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds