Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.54471 * 2 1 4 4 C 1.53102 * 109.50382 * 239.89221 * 2 1 3 5 5 O 1.43016 * 109.25472 * 183.21820 * 4 2 1 6 6 C 1.43016 * 113.74173 * 58.67015 * 5 4 2 7 7 C 1.53094 * 109.25828 * 301.32954 * 6 5 4 8 8 N 1.47012 * 109.25943 * 56.84847 * 7 6 5 9 9 C 1.46898 * 111.00269 * 177.61091 * 8 7 6 10 10 H 1.08997 * 109.47209 * 209.22022 * 9 8 7 11 11 C 1.50707 * 109.46848 * 329.21396 * 9 8 7 12 12 H 1.08000 * 119.99861 * 95.97064 * 11 9 8 13 13 C 1.37876 * 120.00034 * 275.97275 * 11 9 8 14 14 N 1.31519 * 119.99424 * 172.29079 * 13 11 9 15 15 Si 1.86799 * 120.00184 * 352.29012 * 13 11 9 16 16 H 1.48492 * 109.47047 * 84.65682 * 15 13 11 17 17 H 1.48500 * 109.46733 * 204.65716 * 15 13 11 18 18 H 1.48504 * 109.47068 * 324.65296 * 15 13 11 19 19 C 1.50699 * 109.47757 * 89.21563 * 9 8 7 20 20 C 1.38238 * 119.99499 * 303.76397 * 19 9 8 21 21 C 1.38235 * 119.99382 * 179.78687 * 20 19 9 22 22 C 1.38237 * 120.00001 * 0.45442 * 21 20 19 23 23 C 1.38230 * 120.00172 * 359.77229 * 22 21 20 24 24 C 1.38228 * 119.99970 * 124.02520 * 19 9 8 25 25 H 1.09003 * 109.47090 * 299.88843 * 1 2 3 26 26 H 1.09001 * 109.47294 * 59.88917 * 1 2 3 27 27 H 1.09002 * 109.47150 * 179.89274 * 1 2 3 28 28 H 1.08997 * 109.50712 * 63.28290 * 4 2 1 29 29 H 1.09004 * 109.50527 * 303.15102 * 4 2 1 30 30 H 1.08998 * 109.50778 * 181.39129 * 6 5 4 31 31 H 1.09006 * 109.54006 * 61.28477 * 6 5 4 32 32 H 1.08999 * 109.50731 * 296.91293 * 7 6 5 33 33 H 1.08999 * 109.54222 * 176.80032 * 7 6 5 34 34 H 0.97008 * 119.99309 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.00554 * 359.97438 * 20 19 9 36 36 H 1.07995 * 120.00072 * 180.24869 * 21 20 19 37 37 H 1.08000 * 119.99924 * 179.79084 * 22 21 20 38 38 H 1.08001 * 120.00235 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.00472 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2485 5 8 3.4693 -0.7867 -1.2057 6 6 3.9819 -1.4579 -0.0514 7 6 3.4903 -0.7415 1.2091 8 7 2.0210 -0.6953 1.1988 9 6 1.5055 -0.0645 2.4212 10 1 0.5230 -0.4744 2.6550 11 6 2.4489 -0.3385 3.5640 12 1 3.1998 0.3904 3.8311 13 6 2.3535 -1.5198 4.2687 14 7 3.2673 -1.8274 5.1632 15 14 0.9265 -2.6831 3.9529 16 1 1.2467 -3.5565 2.7954 17 1 0.6957 -3.5214 5.1567 18 1 -0.2973 -1.8961 3.6557 19 6 1.3917 1.4232 2.2094 20 6 2.5004 2.1531 1.8234 21 6 2.3950 3.5170 1.6249 22 6 1.1832 4.1525 1.8215 23 6 0.0757 3.4233 2.2120 24 6 0.1801 2.0587 2.4064 25 1 -0.3633 0.5121 0.8910 26 1 -0.3634 0.5155 -0.8890 27 1 -0.3633 -1.0277 -0.0019 28 1 1.7273 -0.1795 -2.1390 29 1 1.6331 -1.7343 -1.2760 30 1 5.0715 -1.4443 -0.0764 31 1 3.6308 -2.4899 -0.0439 32 1 3.8863 0.2739 1.2284 33 1 3.8312 -1.2820 2.0921 34 1 3.1999 -2.6584 5.6592 35 1 3.4482 1.6573 1.6740 36 1 3.2601 4.0867 1.3194 37 1 1.1017 5.2187 1.6696 38 1 -0.8712 3.9197 2.3652 39 1 -0.6852 1.4890 2.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -2.747395 kcal Electronic energy + Delta-G solvation = -21032.635006 eV Core-core repulsion = 18133.579721 eV Total energy + Delta-G solvation = -2899.055286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95116 -38.08889 -35.58478 -32.93010 -31.68337 -30.90565 -30.25917 -28.06030 -26.48410 -25.37444 -22.81613 -22.06542 -21.76616 -20.36883 -18.99028 -16.94701 -16.34988 -15.76578 -15.63168 -14.77763 -14.74795 -14.35295 -14.18056 -14.10958 -13.57251 -13.02342 -12.97634 -12.64580 -12.20975 -11.96352 -11.79504 -11.58350 -11.32625 -11.25692 -10.85941 -10.74060 -10.67044 -10.30273 -10.08552 -9.96427 -9.82319 -9.35374 -8.93972 -8.66363 -8.32103 -7.95361 -7.29620 -6.22422 -4.24841 1.94809 1.98979 3.32021 3.36551 3.42195 4.30632 4.36538 4.37971 4.73509 5.25315 5.35965 5.40400 5.42024 5.53043 5.57176 5.61678 5.71775 5.83160 5.91136 5.97154 6.00814 6.06582 6.11568 6.17767 6.32631 6.47425 6.47710 6.54490 6.60870 6.71028 6.87887 6.98812 7.00142 7.13889 7.32706 7.41276 7.60373 7.63982 7.99105 8.15968 8.43982 8.81444 9.39013 10.87422 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.011185 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.131483 B = 2502.743941 C = 3373.996975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.033 3.967 3 H 0.054 0.946 4 C 0.072 3.928 5 O -0.395 6.395 6 C 0.058 3.942 7 C 0.029 3.971 8 N -0.526 5.526 9 C 0.202 3.798 10 H 0.060 0.940 11 C -0.512 4.512 12 H 0.077 0.923 13 C 0.087 3.913 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.268 1.268 19 C -0.051 4.051 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 4.829 -9.159 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.006 4.006 5 O -0.314 6.314 6 C -0.019 4.019 7 C -0.099 4.099 8 N -0.252 5.252 9 C 0.097 3.903 10 H 0.078 0.922 11 C -0.550 4.550 12 H 0.095 0.905 13 C -0.119 4.119 14 N -0.522 5.522 15 Si 0.715 3.285 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.194 1.194 19 C -0.053 4.053 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.162 4.162 23 C -0.142 4.142 24 C -0.145 4.145 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.991 4.258 -9.182 10.880 hybrid contribution -0.615 0.148 0.282 0.692 sum -4.606 4.407 -8.900 10.947 Atomic orbital electron populations 1.21895 0.94885 1.01888 1.01917 1.22367 0.95625 0.97348 0.92274 0.92834 1.22635 0.81161 0.99660 0.97099 1.87876 1.20609 1.78834 1.44058 1.22837 0.98135 0.95699 0.85190 1.22740 0.88925 0.99829 0.98372 1.63155 1.08463 1.52103 1.01485 1.19047 0.97940 0.84498 0.88793 0.92191 1.20831 1.16898 1.04210 1.13061 0.90508 1.24988 0.95701 0.97215 0.93976 1.69927 1.33477 1.24265 1.24557 0.86649 0.83363 0.81026 0.77479 1.19224 1.22204 1.19369 1.20877 0.92281 0.98866 0.93291 1.21299 0.99044 0.93551 0.99596 1.21059 0.97224 0.94904 1.01145 1.20893 0.93480 0.98956 1.02897 1.20977 0.98060 0.94320 1.00893 1.21007 0.97593 0.94361 1.01552 0.91311 0.93231 0.92512 0.89875 0.93179 0.89442 0.93165 0.94508 0.86987 0.92334 0.85741 0.87130 0.87254 0.87113 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.85 37.16 0.33 -2.07 16 2 C 0.03 0.59 1.97 -67.59 -0.13 0.45 16 3 H 0.05 1.02 5.40 -51.93 -0.28 0.74 16 4 C 0.07 1.18 6.29 37.21 0.23 1.41 16 5 O -0.39 -7.10 10.83 -35.23 -0.38 -7.48 16 6 C 0.06 1.03 7.01 37.21 0.26 1.29 16 7 C 0.03 0.59 4.66 -3.71 -0.02 0.57 16 8 N -0.53 -10.86 4.66 -221.18 -1.03 -11.89 16 9 C 0.20 4.49 1.27 -70.01 -0.09 4.40 16 10 H 0.06 1.40 4.90 -51.93 -0.25 1.15 16 11 C -0.51 -13.22 6.36 -34.44 -0.22 -13.44 16 12 H 0.08 2.19 7.79 -52.49 -0.41 1.79 16 13 C 0.09 2.32 5.18 -17.82 -0.09 2.23 16 14 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 15 Si 0.89 21.15 27.38 -169.99 -4.65 16.50 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.20 6.36 56.52 0.36 -5.84 16 19 C -0.05 -1.03 2.93 -104.63 -0.31 -1.34 16 20 C -0.12 -2.26 6.90 -39.58 -0.27 -2.53 16 21 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 22 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 23 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.13 -2.30 7.78 -39.59 -0.31 -2.60 16 25 H 0.07 1.17 4.15 -51.93 -0.22 0.95 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.76 4.94 -51.93 -0.26 0.50 16 33 H 0.11 2.60 6.34 -51.93 -0.33 2.27 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 2.51 4.98 -52.49 -0.26 2.25 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.96 7.69 -52.49 -0.40 1.56 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -27.97 294.27 -8.06 -36.03 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.39 Total: 6.07 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.81 Total: -19.15 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.26 Total: -36.40 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.38 Total: -7.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.97 -8.06 -36.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.279 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds