Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.54471 * 2 1 4 4 C 1.53102 * 109.50382 * 239.89221 * 2 1 3 5 5 O 1.43016 * 109.25472 * 183.21820 * 4 2 1 6 6 C 1.43016 * 113.74173 * 58.67015 * 5 4 2 7 7 C 1.53094 * 109.25828 * 301.32954 * 6 5 4 8 8 N 1.47012 * 109.25943 * 56.84847 * 7 6 5 9 9 C 1.46898 * 111.00269 * 177.61091 * 8 7 6 10 10 H 1.08997 * 109.47209 * 209.22022 * 9 8 7 11 11 C 1.50707 * 109.46848 * 329.21396 * 9 8 7 12 12 H 1.08000 * 119.99861 * 95.97064 * 11 9 8 13 13 C 1.37876 * 120.00034 * 275.97275 * 11 9 8 14 14 N 1.31519 * 119.99424 * 172.29079 * 13 11 9 15 15 Si 1.86799 * 120.00184 * 352.29012 * 13 11 9 16 16 H 1.48492 * 109.47047 * 84.65682 * 15 13 11 17 17 H 1.48500 * 109.46733 * 204.65716 * 15 13 11 18 18 H 1.48504 * 109.47068 * 324.65296 * 15 13 11 19 19 C 1.50699 * 109.47757 * 89.21563 * 9 8 7 20 20 C 1.38238 * 119.99499 * 303.76397 * 19 9 8 21 21 C 1.38235 * 119.99382 * 179.78687 * 20 19 9 22 22 C 1.38237 * 120.00001 * 0.45442 * 21 20 19 23 23 C 1.38230 * 120.00172 * 359.77229 * 22 21 20 24 24 C 1.38228 * 119.99970 * 124.02520 * 19 9 8 25 25 H 1.09003 * 109.47090 * 299.88843 * 1 2 3 26 26 H 1.09001 * 109.47294 * 59.88917 * 1 2 3 27 27 H 1.09002 * 109.47150 * 179.89274 * 1 2 3 28 28 H 1.08997 * 109.50712 * 63.28290 * 4 2 1 29 29 H 1.09004 * 109.50527 * 303.15102 * 4 2 1 30 30 H 1.08998 * 109.50778 * 181.39129 * 6 5 4 31 31 H 1.09006 * 109.54006 * 61.28477 * 6 5 4 32 32 H 1.08999 * 109.50731 * 296.91293 * 7 6 5 33 33 H 1.08999 * 109.54222 * 176.80032 * 7 6 5 34 34 H 0.97008 * 119.99309 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.00554 * 359.97438 * 20 19 9 36 36 H 1.07995 * 120.00072 * 180.24869 * 21 20 19 37 37 H 1.08000 * 119.99924 * 179.79084 * 22 21 20 38 38 H 1.08001 * 120.00235 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.00472 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2485 5 8 3.4693 -0.7867 -1.2057 6 6 3.9819 -1.4579 -0.0514 7 6 3.4903 -0.7415 1.2091 8 7 2.0210 -0.6953 1.1988 9 6 1.5055 -0.0645 2.4212 10 1 0.5230 -0.4744 2.6550 11 6 2.4489 -0.3385 3.5640 12 1 3.1998 0.3904 3.8311 13 6 2.3535 -1.5198 4.2687 14 7 3.2673 -1.8274 5.1632 15 14 0.9265 -2.6831 3.9529 16 1 1.2467 -3.5565 2.7954 17 1 0.6957 -3.5214 5.1567 18 1 -0.2973 -1.8961 3.6557 19 6 1.3917 1.4232 2.2094 20 6 2.5004 2.1531 1.8234 21 6 2.3950 3.5170 1.6249 22 6 1.1832 4.1525 1.8215 23 6 0.0757 3.4233 2.2120 24 6 0.1801 2.0587 2.4064 25 1 -0.3633 0.5121 0.8910 26 1 -0.3634 0.5155 -0.8890 27 1 -0.3633 -1.0277 -0.0019 28 1 1.7273 -0.1795 -2.1390 29 1 1.6331 -1.7343 -1.2760 30 1 5.0715 -1.4443 -0.0764 31 1 3.6308 -2.4899 -0.0439 32 1 3.8863 0.2739 1.2284 33 1 3.8312 -1.2820 2.0921 34 1 3.1999 -2.6584 5.6592 35 1 3.4482 1.6573 1.6740 36 1 3.2601 4.0867 1.3194 37 1 1.1017 5.2187 1.6696 38 1 -0.8712 3.9197 2.3652 39 1 -0.6852 1.4890 2.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -21.027035 kcal Electronic energy + Delta-G solvation = -21033.427671 eV Core-core repulsion = 18133.579721 eV Total energy + Delta-G solvation = -2899.847950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44283 -39.47098 -37.09928 -34.74897 -33.30990 -32.39070 -31.62445 -29.64544 -27.97629 -26.99626 -24.34539 -23.44324 -23.31104 -21.85942 -20.51303 -18.89908 -17.75360 -17.30387 -17.07337 -16.40500 -16.21932 -15.79215 -15.73980 -15.53573 -15.10843 -14.68539 -14.44204 -14.32935 -13.84934 -13.35444 -13.23468 -12.90327 -12.81047 -12.75860 -12.61260 -12.21322 -12.17917 -11.87304 -11.68130 -11.66179 -11.35368 -11.21395 -10.71973 -10.41552 -9.67893 -9.38131 -8.92035 -8.30997 -6.34984 0.59220 0.62232 1.37793 1.42908 1.48471 2.37236 2.82508 3.00155 3.07742 3.45705 3.97875 4.04536 4.09084 4.18791 4.23241 4.26315 4.33660 4.41106 4.48133 4.58991 4.70467 4.74086 4.77284 4.82785 4.90775 4.98424 5.09813 5.19197 5.21840 5.30405 5.32583 5.39293 5.48540 5.67188 5.70742 5.90661 6.10317 6.22826 6.26233 6.45073 6.55896 6.78427 7.30855 8.82800 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.011185 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.131483 B = 2502.743941 C = 3373.996975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.033 3.967 3 H 0.044 0.956 4 C 0.070 3.930 5 O -0.400 6.400 6 C 0.066 3.934 7 C 0.035 3.965 8 N -0.534 5.534 9 C 0.211 3.789 10 H 0.051 0.949 11 C -0.501 4.501 12 H 0.034 0.966 13 C 0.039 3.961 14 N -0.934 5.934 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.296 1.296 18 H -0.254 1.254 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.118 4.118 24 C -0.136 4.136 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.267 0.733 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 6.303 -11.288 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 H 0.062 0.938 4 C -0.007 4.007 5 O -0.319 6.319 6 C -0.011 4.011 7 C -0.093 4.093 8 N -0.259 5.259 9 C 0.105 3.895 10 H 0.068 0.932 11 C -0.540 4.540 12 H 0.052 0.948 13 C -0.162 4.162 14 N -0.573 5.573 15 Si 0.767 3.233 16 H -0.191 1.191 17 H -0.223 1.223 18 H -0.178 1.178 19 C -0.077 4.077 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.136 4.136 24 C -0.155 4.155 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.072 5.747 -11.330 14.081 hybrid contribution 0.069 -0.151 0.903 0.918 sum -6.003 5.596 -10.428 13.270 Atomic orbital electron populations 1.21881 0.93256 1.02226 1.02890 1.22457 0.96941 0.96685 0.91429 0.93791 1.22820 0.80238 1.00234 0.97395 1.87873 1.21706 1.78793 1.43518 1.22769 0.99280 0.95165 0.83851 1.22580 0.89151 0.99148 0.98395 1.62998 1.08299 1.52507 1.02098 1.18770 0.96053 0.86542 0.88138 0.93162 1.20896 1.16272 1.02827 1.13965 0.94811 1.25658 0.97762 0.98785 0.93985 1.70050 1.35578 1.25117 1.26540 0.85789 0.81162 0.79232 0.77131 1.19092 1.22265 1.17798 1.20678 0.93720 0.97575 0.95708 1.21215 0.98046 0.94984 1.01181 1.21336 0.98938 0.93840 1.00571 1.21338 0.92414 1.00762 1.00755 1.21370 0.99753 0.93295 0.99189 1.21161 0.96893 0.95728 1.01707 0.92240 0.90369 0.92459 0.86837 0.92687 0.87517 0.93005 0.95381 0.90792 0.92439 0.87946 0.85035 0.83518 0.83609 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 8.85 71.98 0.64 -3.70 16 2 C 0.03 1.15 1.97 44.93 0.09 1.24 16 3 H 0.04 1.63 5.40 -2.39 -0.01 1.62 16 4 C 0.07 2.12 6.29 72.02 0.45 2.58 16 5 O -0.40 -13.70 10.83 -148.98 -1.61 -15.32 16 6 C 0.07 2.32 7.01 72.01 0.50 2.82 16 7 C 0.04 1.48 4.66 86.31 0.40 1.89 16 8 N -0.53 -22.12 4.66 -853.67 -3.98 -26.09 16 9 C 0.21 9.52 1.27 43.42 0.06 9.58 16 10 H 0.05 2.35 4.90 -2.39 -0.01 2.34 16 11 C -0.50 -27.21 6.36 25.60 0.16 -27.04 16 12 H 0.03 2.07 7.79 -2.91 -0.02 2.05 16 13 C 0.04 2.15 5.18 84.65 0.44 2.59 16 14 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 15 Si 0.94 44.44 27.38 68.60 1.88 46.32 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 18 H -0.25 -11.25 6.36 99.48 0.63 -10.61 16 19 C -0.08 -3.01 2.93 -19.87 -0.06 -3.07 16 20 C -0.14 -5.29 6.90 22.27 0.15 -5.14 16 21 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 22 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 23 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 24 C -0.14 -4.71 7.78 22.27 0.17 -4.54 16 25 H 0.06 1.90 4.15 -2.39 -0.01 1.89 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 30 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.03 1.23 4.94 -2.39 -0.01 1.22 16 33 H 0.07 3.66 6.34 -2.39 -0.02 3.65 16 34 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 35 H 0.10 4.35 4.98 -2.91 -0.01 4.34 16 36 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.12 3.90 7.69 -2.91 -0.02 3.88 16 Total: -1.00 -63.03 294.27 1.24 -61.79 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.97 Total: 22.22 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.68 Total: -33.23 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.68 Total: -81.78 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.61 Total: -15.32 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -63.03 1.24 -61.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.763 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds