Wall clock time and date at job start Mon Mar 30 2020 06:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.08999 * 110.26438 * 327.07079 * 3 2 1 5 5 C 1.54347 * 110.30651 * 204.99820 * 3 2 1 6 6 C 1.54343 * 102.38263 * 214.72825 * 5 3 2 7 7 C 1.51361 * 105.16834 * 26.33715 * 6 5 3 8 8 C 1.38165 * 109.77535 * 342.82018 * 7 6 5 9 9 C 1.38502 * 119.88132 * 179.97438 * 8 7 6 10 10 C 1.38170 * 120.33244 * 359.97438 * 9 8 7 11 11 C 1.38122 * 119.99810 * 0.02562 * 10 9 8 12 12 C 1.38640 * 119.87089 * 0.03202 * 11 10 9 13 13 O 1.35904 * 119.95292 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99464 * 359.89827 * 13 12 11 15 15 C 1.53005 * 109.46748 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46872 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00058 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00000 * 179.97438 * 16 15 14 19 19 N 1.31506 * 119.99922 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46920 * 60.00272 * 20 18 16 22 22 H 1.48491 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47164 * 300.00448 * 20 18 16 24 24 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 27 27 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 28 28 H 1.09004 * 110.81754 * 332.95659 * 5 3 2 29 29 H 1.08996 * 110.82218 * 96.50346 * 5 3 2 30 30 H 1.09003 * 110.30010 * 145.26106 * 6 5 3 31 31 H 1.09000 * 110.30157 * 267.41291 * 6 5 3 32 32 H 1.07996 * 119.83385 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.00172 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.06489 * 179.97438 * 11 10 9 35 35 H 1.08993 * 109.47082 * 299.99484 * 14 13 12 36 36 H 1.09001 * 109.46966 * 59.99895 * 14 13 12 37 37 H 1.08999 * 109.47268 * 299.99311 * 15 14 13 38 38 H 1.08995 * 109.47057 * 59.99648 * 15 14 13 39 39 H 0.97005 * 120.00077 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3296 2.0314 -0.5558 5 6 3.4123 1.4013 -0.6117 6 6 4.1075 2.5021 0.2172 7 6 3.3795 2.5180 1.5441 8 6 2.1664 1.8685 1.4196 9 6 1.3260 1.7601 2.5152 10 6 1.6948 2.2979 3.7333 11 6 2.9065 2.9481 3.8627 12 6 3.7503 3.0601 2.7685 13 8 4.9432 3.6991 2.8941 14 6 5.2611 4.2323 4.1812 15 6 6.6323 4.9090 4.1284 16 6 6.9673 5.4719 5.4856 17 1 6.2715 5.3587 6.3039 18 6 8.1619 6.1314 5.6828 19 7 9.0089 6.2696 4.6863 20 14 8.5768 6.8297 7.3649 21 1 8.6044 5.7311 8.3638 22 1 9.9077 7.4863 7.3138 23 1 7.5478 7.8271 7.7543 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.8306 -0.5261 0.7814 28 1 3.9120 0.4418 -0.4785 29 1 3.3735 1.6761 -1.6657 30 1 5.1591 2.2564 0.3656 31 1 4.0103 3.4676 -0.2793 32 1 0.3782 1.2519 2.4171 33 1 1.0355 2.2099 4.5842 34 1 3.1956 3.3693 4.8143 35 1 4.5055 4.9636 4.4683 36 1 5.2825 3.4253 4.9136 37 1 7.3877 4.1775 3.8417 38 1 6.6113 5.7159 3.3959 39 1 9.8492 6.7340 4.8249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062799226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:09 Heat of formation + Delta-G solvation = -43.442790 kcal Electronic energy + Delta-G solvation = -19009.738049 eV Core-core repulsion = 16108.918079 eV Total energy + Delta-G solvation = -2900.819970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.62919 -39.63028 -36.96842 -35.48931 -35.05071 -32.48116 -30.64901 -29.94585 -27.95146 -26.99430 -24.89623 -23.73110 -23.10910 -21.73710 -21.32417 -19.13337 -18.20005 -17.20578 -17.08570 -16.78816 -16.55473 -16.19633 -16.05682 -15.32816 -14.80954 -14.40210 -14.34092 -14.18680 -14.05762 -13.60147 -13.21608 -13.11826 -12.84338 -12.71446 -12.56843 -12.55595 -12.38666 -12.03109 -11.95388 -11.77479 -11.60829 -11.58507 -11.43117 -10.63534 -9.84295 -9.28689 -9.07982 -8.28461 -6.42701 0.27211 0.44614 1.39472 1.43523 1.51616 2.25898 2.50385 2.69881 3.05795 3.24749 3.46138 3.67857 3.99476 4.02950 4.15127 4.18756 4.22734 4.27830 4.39683 4.54670 4.56522 4.63803 4.69824 4.75781 4.82754 4.89098 5.07957 5.10585 5.17654 5.24564 5.29543 5.42135 5.43819 5.45071 5.51359 5.65762 5.85879 6.04002 6.05185 6.40471 6.52698 6.71741 7.27585 8.84525 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042635 B = 0.003680 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.585077 B = 7607.123566 C = 8179.791994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.684 5.684 3 C 0.134 3.866 4 H 0.102 0.898 5 C -0.096 4.096 6 C -0.078 4.078 7 C -0.149 4.149 8 C -0.095 4.095 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.221 4.221 12 C 0.116 3.884 13 O -0.338 6.338 14 C 0.084 3.916 15 C 0.031 3.969 16 C -0.549 4.549 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.264 1.264 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.346 0.654 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.058 0.942 37 H -0.002 1.002 38 H -0.002 1.002 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 -11.573 -7.317 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.313 5.313 3 C 0.024 3.976 4 H 0.119 0.881 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.150 4.150 8 C -0.097 4.097 9 C -0.165 4.165 10 C -0.097 4.097 11 C -0.240 4.240 12 C 0.070 3.930 13 O -0.253 6.253 14 C 0.010 3.990 15 C -0.007 4.007 16 C -0.587 4.587 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.188 1.188 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.164 0.836 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.983 -11.562 -8.218 22.904 hybrid contribution 0.591 1.027 2.001 2.325 sum -17.392 -10.535 -6.217 21.263 Atomic orbital electron populations 1.22390 0.86758 1.02792 1.00934 1.60644 1.08916 1.11861 1.49888 1.21180 0.97458 0.89978 0.88975 0.88056 1.22302 0.93311 0.98142 0.99671 1.20976 0.99083 1.00340 0.91128 1.20134 0.98520 1.02714 0.93638 1.21483 0.93132 0.97404 0.97706 1.20796 1.00579 1.03383 0.91766 1.21147 0.94847 0.95240 0.98473 1.21423 0.97352 1.06907 0.98311 1.19234 0.85665 0.93585 0.94482 1.86101 1.34434 1.69146 1.35599 1.22855 0.98133 0.96422 0.81588 1.18935 0.90367 0.94387 0.96961 1.21371 1.04230 1.37002 0.96079 0.91159 1.26046 0.95819 0.96052 1.01708 1.70111 1.10200 1.42841 1.33824 0.85334 0.77567 0.78821 0.78336 1.18799 1.20681 1.18819 0.95232 0.90262 0.91279 0.83610 0.90343 0.88458 0.92059 0.90383 0.83864 0.82914 0.85247 0.92358 0.92373 0.98405 0.98404 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.48 127.69 1.34 1.59 16 2 N -0.68 -11.27 6.62 -514.99 -3.41 -14.68 16 3 C 0.13 2.60 3.19 44.84 0.14 2.75 16 4 H 0.10 1.80 7.82 -2.39 -0.02 1.79 16 5 C -0.10 -1.95 6.77 31.51 0.21 -1.74 16 6 C -0.08 -2.13 6.71 30.51 0.20 -1.93 16 7 C -0.15 -4.66 6.11 -19.50 -0.12 -4.78 16 8 C -0.10 -2.35 5.49 -19.60 -0.11 -2.45 16 9 C -0.15 -3.26 9.74 22.32 0.22 -3.04 16 10 C -0.08 -1.93 10.04 22.23 0.22 -1.71 16 11 C -0.22 -6.97 9.03 22.34 0.20 -6.77 16 12 C 0.12 4.24 6.69 22.53 0.15 4.39 16 13 O -0.34 -14.88 10.09 -92.47 -0.93 -15.81 16 14 C 0.08 3.80 4.68 71.98 0.34 4.14 16 15 C 0.03 1.71 5.34 29.85 0.16 1.87 16 16 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 17 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 20 Si 0.98 43.67 29.54 68.60 2.03 45.69 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.03 0.35 5.97 -2.39 -0.01 0.34 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.81 8.07 -2.38 -0.02 0.79 16 27 H 0.35 5.78 8.53 -89.69 -0.76 5.01 16 28 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.14 2.32 6.11 -2.91 -0.02 2.31 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.13 4.03 6.29 -2.91 -0.02 4.02 16 35 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 36 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -66.74 318.85 1.90 -64.84 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.28 Total: 14.97 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 3.66 Total: -38.21 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -3.13 Total: -71.47 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.93 Total: -15.81 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.74 1.90 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062799226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.392 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds