Wall clock time and date at job start Mon Mar 30 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99834 * 2 1 4 4 H 1.08999 * 110.26799 * 32.93100 * 3 2 1 5 5 C 1.54345 * 110.29873 * 155.00092 * 3 2 1 6 6 C 1.54355 * 102.56184 * 145.16267 * 5 3 2 7 7 C 1.51666 * 105.01147 * 333.90308 * 6 5 3 8 8 C 1.38166 * 109.86324 * 16.91881 * 7 6 5 9 9 C 1.38498 * 119.87972 * 180.15621 * 8 7 6 10 10 C 1.38174 * 120.33385 * 359.97438 * 9 8 7 11 11 C 1.38123 * 119.99982 * 0.02562 * 10 9 8 12 12 C 1.38647 * 119.86903 * 359.97438 * 11 10 9 13 13 O 1.35894 * 119.95187 * 179.97438 * 12 11 10 14 14 C 1.42896 * 117.00089 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.47636 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00274 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99826 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99991 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00269 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47153 * 89.99657 * 20 18 16 22 22 H 1.48502 * 109.47206 * 209.99643 * 20 18 16 23 23 H 1.48498 * 109.46785 * 329.99579 * 20 18 16 24 24 H 1.09002 * 109.47431 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47184 * 299.99598 * 1 2 3 26 26 H 1.08995 * 109.47227 * 59.99406 * 1 2 3 27 27 H 1.00894 * 111.00416 * 123.95630 * 2 1 3 28 28 H 1.09002 * 110.82474 * 263.48617 * 5 3 2 29 29 H 1.09005 * 110.82589 * 26.84391 * 5 3 2 30 30 H 1.08998 * 110.29824 * 92.68278 * 6 5 3 31 31 H 1.09002 * 110.30078 * 214.83532 * 6 5 3 32 32 H 1.07994 * 119.83552 * 179.97438 * 9 8 7 33 33 H 1.08005 * 120.00286 * 179.97438 * 10 9 8 34 34 H 1.07998 * 120.06465 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47068 * 300.00049 * 14 13 12 36 36 H 1.09006 * 109.47106 * 59.99970 * 14 13 12 37 37 H 1.09001 * 109.47138 * 300.00258 * 15 14 13 38 38 H 1.09006 * 109.46692 * 59.99969 * 15 14 13 39 39 H 0.97004 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3295 2.0316 0.5559 5 6 3.4121 1.4013 0.6118 6 6 4.1125 2.4995 -0.2165 7 6 3.3796 2.5177 -1.5442 8 6 2.1663 1.8686 -1.4196 9 6 1.3258 1.7607 -2.5151 10 6 1.6940 2.2997 -3.7329 11 6 2.9059 2.9495 -3.8624 12 6 3.7506 3.0599 -2.7685 13 8 4.9435 3.6985 -2.8942 14 6 5.2616 4.2316 -4.1812 15 6 6.6325 4.9090 -4.1282 16 6 6.9682 5.4706 -5.4857 17 1 6.2731 5.3562 -6.3044 18 6 8.1622 6.1313 -5.6824 19 7 8.4554 6.6210 -6.8672 20 14 9.3642 6.3298 -4.2662 21 1 10.2944 5.1726 -4.2407 22 1 10.1389 7.5838 -4.4465 23 1 8.6146 6.3907 -2.9858 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 3.3734 1.6762 1.6658 29 1 3.9107 0.4407 0.4817 30 1 4.0183 3.4653 0.2799 31 1 5.1632 2.2498 -0.3638 32 1 0.3778 1.2528 -2.4170 33 1 1.0346 2.2121 -4.5838 34 1 3.1949 3.3708 -4.8139 35 1 5.2828 3.4245 -4.9136 36 1 4.5062 4.9631 -4.4684 37 1 6.6109 5.7160 -3.3959 38 1 7.3881 4.1778 -3.8409 39 1 9.2953 7.0862 -7.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062799227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:11 Heat of formation + Delta-G solvation = -19.630875 kcal Electronic energy + Delta-G solvation = -19039.397813 eV Core-core repulsion = 16139.610405 eV Total energy + Delta-G solvation = -2899.787408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41247 -38.32324 -36.00707 -34.16087 -33.31441 -30.95846 -29.50851 -28.91501 -27.06054 -25.24292 -24.09398 -22.34855 -21.37808 -20.73697 -19.85536 -17.57546 -16.62094 -16.31374 -15.78969 -15.38045 -15.36894 -15.04747 -14.37512 -14.04971 -13.84580 -13.75270 -13.06926 -12.82315 -12.57424 -12.45259 -12.32793 -11.90110 -11.63027 -11.48127 -11.29743 -11.01898 -10.96920 -10.77222 -10.69392 -10.15714 -9.97023 -9.79897 -9.33736 -8.77555 -8.62032 -8.44509 -7.77584 -6.13174 -4.13976 1.47460 1.70327 3.28778 3.35889 3.41390 3.75198 3.86665 4.12329 4.39386 4.41784 4.52402 4.85908 5.03293 5.08525 5.14814 5.18770 5.20988 5.28519 5.39574 5.46369 5.64630 5.70457 5.72682 5.89972 5.90840 5.94481 6.04569 6.05752 6.24261 6.43461 6.59767 6.63703 6.68266 6.77939 6.94315 7.09114 7.15265 7.24346 7.63387 7.95845 8.39409 8.87756 9.47188 10.99415 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.003982 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.260440 B = 7029.264988 C = 7701.329610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.684 5.684 3 C 0.125 3.875 4 H 0.061 0.939 5 C -0.123 4.123 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.048 4.048 9 C -0.143 4.143 10 C -0.083 4.083 11 C -0.210 4.210 12 C 0.155 3.845 13 O -0.319 6.319 14 C 0.072 3.928 15 C -0.008 4.008 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.067 0.933 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.343 0.657 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.023 0.977 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.000 -11.669 15.089 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.315 5.315 3 C 0.016 3.984 4 H 0.079 0.921 5 C -0.161 4.161 6 C -0.104 4.104 7 C -0.139 4.139 8 C -0.048 4.048 9 C -0.162 4.162 10 C -0.101 4.101 11 C -0.228 4.228 12 C 0.109 3.891 13 O -0.232 6.232 14 C -0.002 4.002 15 C -0.046 4.046 16 C -0.564 4.564 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.708 3.292 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.655 -11.601 14.448 23.624 hybrid contribution 0.338 0.475 1.057 1.207 sum -14.317 -11.126 15.505 23.857 Atomic orbital electron populations 1.22333 0.87849 1.01827 1.00567 1.60420 1.07754 1.13414 1.49876 1.21050 0.95943 0.89067 0.92337 0.92125 1.22538 0.94300 1.00299 0.98949 1.20840 0.99648 0.98591 0.91369 1.19740 0.97114 1.03474 0.93545 1.20088 0.93615 0.96503 0.94635 1.20384 1.00218 1.03418 0.92151 1.20805 0.95693 0.96510 0.97069 1.21281 0.96388 1.06283 0.98895 1.18698 0.85859 0.92013 0.92574 1.86114 1.32566 1.68230 1.36298 1.23063 0.99663 0.96650 0.80827 1.19573 0.90434 0.95825 0.98720 1.20850 1.04758 1.36332 0.94496 0.90756 1.24937 0.97753 0.94626 0.95708 1.69897 1.24274 1.37472 1.22004 0.86753 0.81304 0.77809 0.83378 1.20049 1.21191 1.18752 0.91437 0.96067 0.91345 0.83884 0.90720 0.89975 0.90520 0.90314 0.86726 0.85988 0.84944 0.92583 0.92588 0.95463 0.95881 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.48 60.06 0.63 0.81 16 2 N -0.68 -6.37 6.64 -114.13 -0.76 -7.12 16 3 C 0.13 1.33 3.21 -67.82 -0.22 1.11 16 4 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 5 C -0.12 -1.20 6.46 -25.32 -0.16 -1.36 16 6 C -0.07 -0.86 6.73 -26.70 -0.18 -1.04 16 7 C -0.14 -2.13 6.12 -103.91 -0.64 -2.77 16 8 C -0.05 -0.65 5.78 -104.22 -0.60 -1.25 16 9 C -0.14 -1.90 9.75 -39.51 -0.39 -2.28 16 10 C -0.08 -1.14 10.04 -39.65 -0.40 -1.54 16 11 C -0.21 -3.38 9.03 -39.47 -0.36 -3.74 16 12 C 0.16 2.74 6.69 -39.17 -0.26 2.48 16 13 O -0.32 -6.39 10.08 -19.41 -0.20 -6.58 16 14 C 0.07 1.51 4.68 37.16 0.17 1.69 16 15 C -0.01 -0.20 4.41 -27.89 -0.12 -0.32 16 16 C -0.53 -14.94 9.66 -34.44 -0.33 -15.28 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.14 8.07 -51.93 -0.42 -0.27 16 26 H 0.07 0.57 5.97 -51.93 -0.31 0.26 16 27 H 0.34 2.53 8.46 -39.30 -0.33 2.20 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.28 6.11 -52.49 -0.32 0.96 16 33 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 2.09 6.29 -52.49 -0.33 1.76 16 35 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 36 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 37 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 38 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 315.17 15.07 4.75 4.75 Total: -1.00 -31.24 315.17 -8.85 -40.09 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.80 Total: 0.03 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.95 Total: -21.50 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.02 Total: -33.78 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.24 -8.85 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062799227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.457 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds