Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99834 * 2 1 4 4 H 1.08999 * 110.26799 * 32.93100 * 3 2 1 5 5 C 1.54345 * 110.29873 * 155.00092 * 3 2 1 6 6 C 1.54355 * 102.56184 * 145.16267 * 5 3 2 7 7 C 1.51666 * 105.01147 * 333.90308 * 6 5 3 8 8 C 1.38166 * 109.86324 * 16.91881 * 7 6 5 9 9 C 1.38498 * 119.87972 * 180.15621 * 8 7 6 10 10 C 1.38174 * 120.33385 * 359.97438 * 9 8 7 11 11 C 1.38123 * 119.99982 * 0.02562 * 10 9 8 12 12 C 1.38647 * 119.86903 * 359.97438 * 11 10 9 13 13 O 1.35894 * 119.95187 * 179.97438 * 12 11 10 14 14 C 1.42896 * 117.00089 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.47636 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00274 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99826 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99991 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00269 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47153 * 89.99657 * 20 18 16 22 22 H 1.48502 * 109.47206 * 209.99643 * 20 18 16 23 23 H 1.48498 * 109.46785 * 329.99579 * 20 18 16 24 24 H 1.09002 * 109.47431 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47184 * 299.99598 * 1 2 3 26 26 H 1.08995 * 109.47227 * 59.99406 * 1 2 3 27 27 H 1.00894 * 111.00416 * 123.95630 * 2 1 3 28 28 H 1.09002 * 110.82474 * 263.48617 * 5 3 2 29 29 H 1.09005 * 110.82589 * 26.84391 * 5 3 2 30 30 H 1.08998 * 110.29824 * 92.68278 * 6 5 3 31 31 H 1.09002 * 110.30078 * 214.83532 * 6 5 3 32 32 H 1.07994 * 119.83552 * 179.97438 * 9 8 7 33 33 H 1.08005 * 120.00286 * 179.97438 * 10 9 8 34 34 H 1.07998 * 120.06465 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47068 * 300.00049 * 14 13 12 36 36 H 1.09006 * 109.47106 * 59.99970 * 14 13 12 37 37 H 1.09001 * 109.47138 * 300.00258 * 15 14 13 38 38 H 1.09006 * 109.46692 * 59.99969 * 15 14 13 39 39 H 0.97004 * 120.00228 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3295 2.0316 0.5559 5 6 3.4121 1.4013 0.6118 6 6 4.1125 2.4995 -0.2165 7 6 3.3796 2.5177 -1.5442 8 6 2.1663 1.8686 -1.4196 9 6 1.3258 1.7607 -2.5151 10 6 1.6940 2.2997 -3.7329 11 6 2.9059 2.9495 -3.8624 12 6 3.7506 3.0599 -2.7685 13 8 4.9435 3.6985 -2.8942 14 6 5.2616 4.2316 -4.1812 15 6 6.6325 4.9090 -4.1282 16 6 6.9682 5.4706 -5.4857 17 1 6.2731 5.3562 -6.3044 18 6 8.1622 6.1313 -5.6824 19 7 8.4554 6.6210 -6.8672 20 14 9.3642 6.3298 -4.2662 21 1 10.2944 5.1726 -4.2407 22 1 10.1389 7.5838 -4.4465 23 1 8.6146 6.3907 -2.9858 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 3.3734 1.6762 1.6658 29 1 3.9107 0.4407 0.4817 30 1 4.0183 3.4653 0.2799 31 1 5.1632 2.2498 -0.3638 32 1 0.3778 1.2528 -2.4170 33 1 1.0346 2.2121 -4.5838 34 1 3.1949 3.3708 -4.8139 35 1 5.2828 3.4245 -4.9136 36 1 4.5062 4.9631 -4.4684 37 1 6.6109 5.7160 -3.3959 38 1 7.3881 4.1778 -3.8409 39 1 9.2953 7.0862 -7.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062799227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = -39.553101 kcal Electronic energy + Delta-G solvation = -19040.261706 eV Core-core repulsion = 16139.610405 eV Total energy + Delta-G solvation = -2900.651301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54222 -39.58300 -37.04839 -35.42281 -34.99124 -32.86517 -30.71766 -29.99661 -27.93390 -27.08386 -24.91448 -23.52326 -22.92904 -21.83347 -21.17633 -19.27081 -18.27799 -17.28071 -17.07792 -16.79429 -16.40542 -16.29445 -15.91192 -15.22071 -14.96979 -14.69178 -14.62091 -14.28654 -14.07497 -13.50477 -13.27712 -13.22349 -13.03454 -12.71742 -12.48874 -12.26884 -12.10997 -12.03861 -11.88373 -11.81863 -11.74598 -11.55404 -11.43445 -10.83109 -9.63117 -9.36000 -9.03735 -8.36499 -6.43578 0.35275 0.52007 1.35202 1.36423 1.49479 2.32142 2.34455 2.75874 2.98405 3.36589 3.48027 3.60024 3.95204 4.03562 4.16239 4.19705 4.25577 4.31029 4.38969 4.48721 4.57469 4.62820 4.64782 4.72192 4.86435 4.88880 4.98647 5.09784 5.11222 5.20094 5.22262 5.28064 5.42471 5.49766 5.54282 5.62075 5.91286 6.04795 6.14646 6.51738 6.52556 6.61989 7.21729 8.79379 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037311 B = 0.003982 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.260440 B = 7029.264988 C = 7701.329610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.694 5.694 3 C 0.130 3.870 4 H 0.073 0.927 5 C -0.112 4.112 6 C -0.072 4.072 7 C -0.153 4.153 8 C -0.051 4.051 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.225 4.225 12 C 0.117 3.883 13 O -0.333 6.333 14 C 0.087 3.913 15 C -0.004 4.004 16 C -0.538 4.538 17 H 0.041 0.959 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.950 3.050 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.250 1.250 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.355 0.645 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -12.995 17.812 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.326 5.326 3 C 0.020 3.980 4 H 0.090 0.910 5 C -0.149 4.149 6 C -0.109 4.109 7 C -0.155 4.155 8 C -0.052 4.052 9 C -0.157 4.157 10 C -0.102 4.102 11 C -0.244 4.244 12 C 0.072 3.928 13 O -0.247 6.247 14 C 0.012 3.988 15 C -0.041 4.041 16 C -0.576 4.576 17 H 0.059 0.941 18 C -0.184 4.184 19 N -0.582 5.582 20 Si 0.773 3.227 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.174 1.174 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.175 0.825 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.750 -12.950 17.186 26.667 hybrid contribution 0.515 0.815 0.168 0.978 sum -15.235 -12.136 17.354 26.087 Atomic orbital electron populations 1.22370 0.86832 1.02725 1.00711 1.60341 1.08822 1.12616 1.50833 1.21018 0.96702 0.90048 0.90227 0.90972 1.22523 0.93262 0.99223 0.99909 1.20948 0.99140 1.00111 0.90749 1.20170 0.98358 1.03159 0.93776 1.20604 0.92673 0.95475 0.96459 1.20761 1.00955 1.02340 0.91688 1.21129 0.95034 0.95602 0.98463 1.21381 0.97463 1.07223 0.98359 1.19084 0.85587 0.93890 0.94287 1.86026 1.34378 1.69270 1.35030 1.22645 0.97884 0.96470 0.81774 1.19420 0.92473 0.95935 0.96289 1.21113 1.04409 1.36611 0.95487 0.94110 1.25892 0.99821 0.94141 0.98593 1.70030 1.25259 1.38573 1.24384 0.85660 0.78776 0.78303 0.79987 1.18893 1.20332 1.17403 0.90226 0.94989 0.92056 0.82470 0.87864 0.89715 0.90087 0.91461 0.84249 0.83402 0.85702 0.92743 0.92657 0.95399 0.95563 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.48 127.69 1.34 1.61 16 2 N -0.69 -10.62 6.64 -515.00 -3.42 -14.04 16 3 C 0.13 2.35 3.21 44.84 0.14 2.50 16 4 H 0.07 1.18 7.82 -2.39 -0.02 1.16 16 5 C -0.11 -1.86 6.46 31.51 0.20 -1.66 16 6 C -0.07 -1.76 6.73 30.62 0.21 -1.55 16 7 C -0.15 -4.66 6.12 -19.40 -0.12 -4.78 16 8 C -0.05 -1.30 5.78 -19.60 -0.11 -1.41 16 9 C -0.14 -3.39 9.75 22.32 0.22 -3.17 16 10 C -0.08 -2.23 10.04 22.23 0.22 -2.00 16 11 C -0.23 -7.36 9.03 22.34 0.20 -7.16 16 12 C 0.12 4.19 6.69 22.54 0.15 4.34 16 13 O -0.33 -13.63 10.08 -92.36 -0.93 -14.56 16 14 C 0.09 3.76 4.68 71.98 0.34 4.10 16 15 C 0.00 -0.18 4.41 29.85 0.13 -0.05 16 16 C -0.54 -31.46 9.66 25.60 0.25 -31.22 16 17 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 18 C 0.01 0.80 5.47 84.65 0.46 1.27 16 19 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 20 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.03 0.32 8.07 -2.39 -0.02 0.30 16 26 H 0.06 0.82 5.97 -2.39 -0.01 0.80 16 27 H 0.36 4.00 8.46 -89.70 -0.76 3.24 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.38 8.05 -2.38 -0.02 1.36 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.14 2.68 6.11 -2.91 -0.02 2.66 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.13 4.13 6.29 -2.91 -0.02 4.11 16 35 H 0.05 2.32 7.66 -2.39 -0.02 2.30 16 36 H 0.06 2.35 7.66 -2.38 -0.02 2.33 16 37 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 38 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -68.38 315.17 1.70 -66.68 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.23 Total: 13.20 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.63 Total: -39.19 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -3.12 Total: -72.62 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.93 Total: -14.56 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -68.38 1.70 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062799227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.128 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds