Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 H 1.07995 * 120.00358 * 120.00169 * 4 2 1 6 6 C 1.37877 * 119.99768 * 299.99729 * 4 2 1 7 7 N 1.31515 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47238 * 60.00017 * 8 6 4 10 10 H 1.48494 * 109.47094 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46981 * 299.99863 * 8 6 4 12 12 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 13 13 C 1.46898 * 111.00283 * 183.95482 * 12 2 1 14 14 C 1.46906 * 110.99573 * 60.00340 * 12 2 1 15 15 H 1.08998 * 109.47121 * 309.99709 * 14 12 2 16 16 C 1.53000 * 109.47029 * 70.00117 * 14 12 2 17 17 C 1.50706 * 109.46929 * 190.00042 * 14 12 2 18 18 O 1.21248 * 119.99708 * 345.00288 * 17 14 12 19 19 C 1.47163 * 119.99796 * 164.99892 * 17 14 12 20 20 C 1.39852 * 120.17187 * 359.72741 * 19 17 14 21 21 C 1.37887 * 119.82209 * 179.74068 * 20 19 17 22 22 C 1.38398 * 120.17628 * 0.53255 * 21 20 19 23 23 C 1.38413 * 120.34526 * 359.72306 * 22 21 20 24 24 C 1.37890 * 120.17017 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 27 27 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 28 28 H 0.96997 * 120.00560 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47334 * 296.05250 * 13 12 2 30 30 H 1.09000 * 109.46674 * 56.05127 * 13 12 2 31 31 H 1.08995 * 109.47296 * 176.04950 * 13 12 2 32 32 H 1.08999 * 109.46789 * 299.99921 * 16 14 12 33 33 H 1.08998 * 109.47056 * 60.00115 * 16 14 12 34 34 H 1.09002 * 109.46786 * 180.02562 * 16 14 12 35 35 H 1.07999 * 120.08896 * 359.97438 * 20 19 17 36 36 H 1.08002 * 119.91229 * 180.27503 * 21 20 19 37 37 H 1.08000 * 119.83077 * 179.69709 * 22 21 20 38 38 H 1.08001 * 119.91063 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.08170 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3221 -1.1194 4.0081 9 1 3.8071 -1.1190 4.0080 10 1 1.8265 -0.4198 5.2205 11 1 1.8275 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4211 15 1 0.4723 0.1322 -2.3564 16 6 2.2551 1.3223 -2.5712 17 6 1.8580 -0.8914 -3.6159 18 8 2.6421 -1.8104 -3.5122 19 6 1.2083 -0.6205 -4.9082 20 6 0.2990 0.4350 -5.0302 21 6 -0.3015 0.6857 -6.2459 22 6 -0.0148 -0.1108 -7.3408 23 6 0.8800 -1.1606 -7.2268 24 6 1.4926 -1.4209 -6.0192 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.7087 1.1616 3.4843 29 1 3.9192 0.2042 -1.2299 30 1 3.8068 -1.2917 -0.2717 31 1 3.8164 -1.3723 -2.0498 32 1 2.0314 1.9477 -1.7070 33 1 3.3315 1.1634 -2.6359 34 1 1.9053 1.8167 -3.4775 35 1 0.0706 1.0544 -4.1755 36 1 -1.0006 1.5032 -6.3428 37 1 -0.4921 0.0876 -8.2891 38 1 1.0988 -1.7774 -8.0859 39 1 2.1902 -2.2407 -5.9317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = 6.583676 kcal Electronic energy + Delta-G solvation = -19784.027520 eV Core-core repulsion = 16885.376860 eV Total energy + Delta-G solvation = -2898.650660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13604 -38.35733 -36.66032 -33.12759 -31.81284 -31.03150 -29.90231 -28.81154 -25.71934 -24.96556 -23.91077 -22.81483 -22.15476 -20.00330 -18.42739 -17.33224 -16.36091 -15.82110 -15.42368 -15.11807 -14.48983 -14.42511 -14.18588 -13.77938 -13.52468 -13.31850 -13.03356 -12.62428 -12.54483 -11.91536 -11.74297 -11.66612 -11.26575 -11.17954 -10.96648 -10.89632 -10.82859 -10.56138 -10.13009 -10.02078 -9.91865 -9.09312 -9.02317 -8.97002 -8.77929 -8.39892 -7.09852 -5.99719 -4.03124 0.70847 1.27386 2.62445 3.34640 3.38259 3.42200 3.78879 4.13334 4.44925 4.73469 4.81627 4.93438 5.07139 5.25293 5.31989 5.32935 5.47904 5.53391 5.62977 5.79469 5.87459 5.98697 6.14840 6.24759 6.30811 6.35413 6.37803 6.49214 6.57609 6.78705 6.82381 6.98746 7.04865 7.17420 7.52510 7.70237 7.85162 7.93420 8.22457 8.33775 8.61292 9.03286 9.61480 11.07264 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039626 B = 0.004676 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.430386 B = 5986.441754 C = 6334.051644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.034 3.966 15 H 0.108 0.892 16 C -0.179 4.179 17 C 0.401 3.599 18 O -0.435 6.435 19 C -0.157 4.157 20 C -0.073 4.073 21 C -0.134 4.134 22 C -0.097 4.097 23 C -0.135 4.135 24 C -0.067 4.067 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.007 0.993 28 H 0.260 0.740 29 H 0.011 0.989 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 1.390 -17.524 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.076 4.076 15 H 0.125 0.875 16 C -0.238 4.238 17 C 0.277 3.723 18 O -0.309 6.309 19 C -0.158 4.158 20 C -0.091 4.091 21 C -0.152 4.152 22 C -0.115 4.115 23 C -0.153 4.153 24 C -0.085 4.085 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.727 0.531 -17.282 17.376 hybrid contribution 0.456 0.511 0.843 1.086 sum -1.271 1.042 -16.439 16.521 Atomic orbital electron populations 1.21884 0.97908 0.99720 0.99789 1.19309 0.92171 0.92326 0.85766 0.97862 1.21128 1.30940 1.12285 0.89685 0.91845 1.24910 0.95228 0.95090 0.98954 1.69871 1.37040 1.23047 1.23483 0.86579 0.79104 0.79793 0.82050 1.20349 1.21392 1.20223 1.62258 1.10342 1.51020 1.00716 1.22556 0.88162 0.98985 1.03063 1.22055 1.02023 0.92090 0.91431 0.87451 1.22366 1.01497 0.97385 1.02564 1.22693 0.78590 0.83067 0.87931 1.90401 1.28196 1.26933 1.85339 1.20732 1.00778 0.98414 0.95884 1.21608 0.93900 0.95567 0.98069 1.21155 1.00767 1.00364 0.92916 1.21375 0.96785 0.94701 0.98675 1.21130 0.98046 0.98534 0.97637 1.21449 0.97452 0.97827 0.91746 0.94629 0.89497 0.97458 0.92979 0.97106 0.90759 0.91236 0.90633 0.92032 0.92521 0.84741 0.85495 0.85867 0.85672 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.76 37.15 0.33 -2.92 16 2 C 0.21 5.27 1.86 -68.86 -0.13 5.14 16 3 H 0.00 0.10 6.62 -51.93 -0.34 -0.24 16 4 C -0.50 -13.89 7.88 -34.44 -0.27 -14.16 16 5 H 0.06 1.78 6.41 -52.49 -0.34 1.44 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.52 -11.61 4.43 -229.69 -1.02 -12.62 16 13 C 0.02 0.44 8.41 60.06 0.50 0.94 16 14 C 0.03 0.62 1.73 -68.86 -0.12 0.50 16 15 H 0.11 1.89 5.00 -51.93 -0.26 1.63 16 16 C -0.18 -2.90 8.22 37.16 0.31 -2.59 16 17 C 0.40 6.91 6.28 -30.68 -0.19 6.72 16 18 O -0.44 -8.59 13.78 5.58 0.08 -8.51 16 19 C -0.16 -2.20 5.86 -105.07 -0.62 -2.82 16 20 C -0.07 -0.87 8.64 -39.11 -0.34 -1.21 16 21 C -0.13 -1.31 10.03 -39.65 -0.40 -1.71 16 22 C -0.10 -0.89 10.04 -39.46 -0.40 -1.28 16 23 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 24 C -0.07 -0.84 9.60 -39.11 -0.38 -1.21 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 27 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.01 0.22 6.21 -51.93 -0.32 -0.10 16 30 H 0.07 1.70 6.10 -51.93 -0.32 1.39 16 31 H 0.07 1.44 5.39 -51.93 -0.28 1.16 16 32 H 0.07 1.33 6.69 -51.93 -0.35 0.98 16 33 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 34 H 0.06 0.74 6.66 -51.93 -0.35 0.39 16 35 H 0.13 1.48 5.96 -52.49 -0.31 1.17 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.65 7.65 -52.49 -0.40 1.25 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -30.33 304.93 -7.99 -38.32 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.06 Total: 1.21 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.19 Total: -14.81 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.39 Total: -37.33 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.33 -7.99 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.903 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds