Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47516 * 2 1 4 4 C 1.50707 * 109.46654 * 119.99979 * 2 1 3 5 5 H 1.07995 * 120.00358 * 120.00169 * 4 2 1 6 6 C 1.37877 * 119.99768 * 299.99729 * 4 2 1 7 7 N 1.31515 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47238 * 60.00017 * 8 6 4 10 10 H 1.48494 * 109.47094 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46981 * 299.99863 * 8 6 4 12 12 N 1.46902 * 109.47407 * 239.99296 * 2 1 3 13 13 C 1.46898 * 111.00283 * 183.95482 * 12 2 1 14 14 C 1.46906 * 110.99573 * 60.00340 * 12 2 1 15 15 H 1.08998 * 109.47121 * 309.99709 * 14 12 2 16 16 C 1.53000 * 109.47029 * 70.00117 * 14 12 2 17 17 C 1.50706 * 109.46929 * 190.00042 * 14 12 2 18 18 O 1.21248 * 119.99708 * 345.00288 * 17 14 12 19 19 C 1.47163 * 119.99796 * 164.99892 * 17 14 12 20 20 C 1.39852 * 120.17187 * 359.72741 * 19 17 14 21 21 C 1.37887 * 119.82209 * 179.74068 * 20 19 17 22 22 C 1.38398 * 120.17628 * 0.53255 * 21 20 19 23 23 C 1.38413 * 120.34526 * 359.72306 * 22 21 20 24 24 C 1.37890 * 120.17017 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47841 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47719 * 300.00655 * 1 2 3 27 27 H 1.09001 * 109.46892 * 60.00647 * 1 2 3 28 28 H 0.96997 * 120.00560 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47334 * 296.05250 * 13 12 2 30 30 H 1.09000 * 109.46674 * 56.05127 * 13 12 2 31 31 H 1.08995 * 109.47296 * 176.04950 * 13 12 2 32 32 H 1.08999 * 109.46789 * 299.99921 * 16 14 12 33 33 H 1.08998 * 109.47056 * 60.00115 * 16 14 12 34 34 H 1.09002 * 109.46786 * 180.02562 * 16 14 12 35 35 H 1.07999 * 120.08896 * 359.97438 * 20 19 17 36 36 H 1.08002 * 119.91229 * 180.27503 * 21 20 19 37 37 H 1.08000 * 119.83077 * 179.69709 * 22 21 20 38 38 H 1.08001 * 119.91063 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.08170 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3221 -1.1194 4.0081 9 1 3.8071 -1.1190 4.0080 10 1 1.8265 -0.4198 5.2205 11 1 1.8275 -2.5196 4.0083 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4211 15 1 0.4723 0.1322 -2.3564 16 6 2.2551 1.3223 -2.5712 17 6 1.8580 -0.8914 -3.6159 18 8 2.6421 -1.8104 -3.5122 19 6 1.2083 -0.6205 -4.9082 20 6 0.2990 0.4350 -5.0302 21 6 -0.3015 0.6857 -6.2459 22 6 -0.0148 -0.1108 -7.3408 23 6 0.8800 -1.1606 -7.2268 24 6 1.4926 -1.4209 -6.0192 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.7087 1.1616 3.4843 29 1 3.9192 0.2042 -1.2299 30 1 3.8068 -1.2917 -0.2717 31 1 3.8164 -1.3723 -2.0498 32 1 2.0314 1.9477 -1.7070 33 1 3.3315 1.1634 -2.6359 34 1 1.9053 1.8167 -3.4775 35 1 0.0706 1.0544 -4.1755 36 1 -1.0006 1.5032 -6.3428 37 1 -0.4921 0.0876 -8.2891 38 1 1.0988 -1.7774 -8.0859 39 1 2.1902 -2.2407 -5.9317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = -11.534353 kcal Electronic energy + Delta-G solvation = -19784.813177 eV Core-core repulsion = 16885.376860 eV Total energy + Delta-G solvation = -2899.436317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39672 -39.45074 -38.26630 -35.05338 -33.07605 -31.88184 -31.47001 -30.48664 -27.50936 -26.56005 -25.49563 -23.96665 -23.25734 -21.48751 -19.91985 -18.49522 -18.34500 -17.12709 -16.65835 -16.50337 -16.18511 -15.71081 -15.37559 -15.24827 -14.82847 -14.59804 -14.45438 -14.31115 -13.62879 -13.42867 -13.28746 -13.00938 -12.89526 -12.69009 -12.64038 -12.56825 -12.22328 -12.03725 -12.01532 -11.91133 -11.83625 -10.88607 -10.50230 -10.33405 -9.91248 -9.89426 -8.87389 -8.11347 -6.21635 -0.27598 0.46098 1.41463 1.42991 1.48108 1.50698 2.41658 2.86589 2.90726 3.17039 3.46383 3.88262 4.06326 4.10299 4.15290 4.18892 4.32337 4.51181 4.54819 4.61664 4.64345 4.71302 4.80820 4.87931 4.94407 5.03785 5.10961 5.14452 5.17442 5.29016 5.43564 5.49058 5.53126 5.53896 5.73573 5.79156 5.99949 6.26833 6.37642 6.57061 6.75679 6.91712 7.46612 8.94241 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039626 B = 0.004676 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.430386 B = 5986.441754 C = 6334.051644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H -0.020 1.020 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.535 5.535 13 C 0.030 3.970 14 C 0.030 3.970 15 H 0.114 0.886 16 C -0.169 4.169 17 C 0.405 3.595 18 O -0.474 6.474 19 C -0.183 4.183 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.081 4.081 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.015 0.985 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 2.022 -19.791 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H -0.002 1.002 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.201 1.201 12 N -0.259 5.259 13 C -0.118 4.118 14 C -0.079 4.079 15 H 0.132 0.868 16 C -0.228 4.228 17 C 0.284 3.716 18 O -0.350 6.350 19 C -0.184 4.184 20 C -0.097 4.097 21 C -0.150 4.150 22 C -0.102 4.102 23 C -0.152 4.152 24 C -0.099 4.099 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.835 1.173 -19.566 19.805 hybrid contribution 0.743 0.344 1.400 1.622 sum -2.091 1.517 -18.165 18.348 Atomic orbital electron populations 1.21699 0.97171 0.99100 1.00187 1.19095 0.92653 0.90880 0.86393 1.00229 1.21398 1.31236 1.12271 0.91293 0.93052 1.25610 0.95368 0.95769 1.01520 1.69977 1.37567 1.23897 1.24110 0.85651 0.78651 0.78685 0.78868 1.19956 1.20547 1.20074 1.62144 1.10581 1.51698 1.01471 1.22433 0.88129 0.99034 1.02206 1.22183 1.02361 0.93167 0.90236 0.86827 1.22258 1.00880 0.96137 1.03497 1.22834 0.77933 0.81913 0.88895 1.90376 1.30179 1.28441 1.86000 1.20471 1.02741 1.00676 0.94496 1.21742 0.93597 0.94950 0.99447 1.21538 1.00440 1.00989 0.92011 1.21857 0.95295 0.93164 0.99925 1.21456 0.97462 0.99061 0.97242 1.21525 0.98065 0.97716 0.92629 0.95575 0.91754 0.94340 0.92852 0.96700 0.92890 0.90494 0.92295 0.92727 0.88969 0.84300 0.82520 0.82241 0.83050 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.76 71.98 0.63 -5.38 16 2 C 0.22 11.14 1.86 44.17 0.08 11.22 16 3 H -0.02 -1.09 6.62 -2.39 -0.02 -1.11 16 4 C -0.52 -29.76 7.88 25.60 0.20 -29.56 16 5 H 0.05 2.98 6.41 -2.91 -0.02 2.96 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.54 11.32 21.45 0.24 -52.29 16 8 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.53 -24.49 4.43 -880.59 -3.90 -28.39 16 13 C 0.03 1.34 8.41 127.69 1.07 2.41 16 14 C 0.03 1.09 1.73 44.17 0.08 1.17 16 15 H 0.11 3.93 5.00 -2.39 -0.01 3.92 16 16 C -0.17 -5.40 8.22 71.98 0.59 -4.81 16 17 C 0.41 14.04 6.28 28.03 0.18 14.21 16 18 O -0.47 -19.21 13.78 -2.93 -0.04 -19.25 16 19 C -0.18 -4.94 5.86 -20.15 -0.12 -5.06 16 20 C -0.08 -1.68 8.64 22.58 0.19 -1.49 16 21 C -0.13 -2.03 10.03 22.22 0.22 -1.81 16 22 C -0.08 -1.15 10.04 22.35 0.22 -0.93 16 23 C -0.13 -2.26 10.03 22.23 0.22 -2.03 16 24 C -0.08 -1.95 9.60 22.58 0.22 -1.73 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 27 H 0.04 1.57 6.20 -2.39 -0.01 1.56 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 29 H 0.01 0.63 6.21 -2.39 -0.01 0.61 16 30 H 0.05 2.54 6.10 -2.39 -0.01 2.52 16 31 H 0.08 3.31 5.39 -2.39 -0.01 3.30 16 32 H 0.06 2.08 6.69 -2.39 -0.02 2.06 16 33 H 0.05 1.80 6.33 -2.39 -0.02 1.79 16 34 H 0.09 2.24 6.66 -2.39 -0.02 2.23 16 35 H 0.14 2.72 5.96 -2.91 -0.02 2.71 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 Total: -1.00 -67.13 304.93 3.63 -63.50 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.06 Total: 12.13 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.25 Total: -22.42 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -3.65 Total: -80.68 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.04 Total: -19.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.13 3.63 -63.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.963 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds