Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47148 * 2 1 4 4 C 1.50710 * 109.46904 * 240.00259 * 2 1 3 5 5 H 1.07999 * 119.99973 * 240.00266 * 4 2 1 6 6 C 1.37876 * 119.99957 * 59.99992 * 4 2 1 7 7 N 1.31520 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00203 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46698 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47118 * 119.99852 * 8 6 4 11 11 H 1.48494 * 109.47406 * 240.00363 * 8 6 4 12 12 N 1.46896 * 109.47122 * 120.00415 * 2 1 3 13 13 C 1.46896 * 111.00225 * 302.81931 * 12 2 1 14 14 C 1.46903 * 110.99897 * 178.86536 * 12 2 1 15 15 H 1.08998 * 109.47209 * 316.01597 * 14 12 2 16 16 C 1.52998 * 109.47316 * 76.01794 * 14 12 2 17 17 C 1.50700 * 109.47211 * 196.01895 * 14 12 2 18 18 O 1.21253 * 119.99926 * 345.00280 * 17 14 12 19 19 C 1.47168 * 120.00164 * 164.99837 * 17 14 12 20 20 C 1.39856 * 120.17025 * 179.97438 * 19 17 14 21 21 C 1.37883 * 119.82293 * 180.02562 * 20 19 17 22 22 C 1.38411 * 120.17269 * 0.02614 * 21 20 19 23 23 C 1.38406 * 120.34829 * 0.23128 * 22 21 20 24 24 C 1.37891 * 120.16937 * 359.48907 * 23 22 21 25 25 H 1.08999 * 109.46618 * 304.85791 * 1 2 3 26 26 H 1.08995 * 109.46878 * 64.85246 * 1 2 3 27 27 H 1.08994 * 109.47151 * 184.85700 * 1 2 3 28 28 H 0.96999 * 119.99323 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47268 * 296.04846 * 13 12 2 30 30 H 1.09000 * 109.46934 * 56.04633 * 13 12 2 31 31 H 1.08999 * 109.47548 * 176.04900 * 13 12 2 32 32 H 1.08994 * 109.47776 * 185.62448 * 16 14 12 33 33 H 1.09000 * 109.46978 * 305.62589 * 16 14 12 34 34 H 1.09004 * 109.47001 * 65.62198 * 16 14 12 35 35 H 1.07994 * 120.08571 * 0.02562 * 20 19 17 36 36 H 1.08003 * 119.91669 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.82192 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.91218 * 179.72444 * 23 22 21 39 39 H 1.07996 * 120.08378 * 180.23442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1677 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0197 -0.6926 1.1993 13 6 1.4944 -0.0666 2.4201 14 6 3.4879 -0.7357 1.2198 15 1 3.8574 -1.0016 0.2294 16 6 4.0331 0.6379 1.6157 17 6 3.9464 -1.7655 2.2200 18 8 3.1675 -2.2032 3.0397 19 6 5.3394 -2.2399 2.2018 20 6 5.7688 -3.1951 3.1288 21 6 7.0756 -3.6341 3.1056 22 6 7.9618 -3.1316 2.1686 23 6 7.5459 -2.1823 1.2513 24 6 6.2407 -1.7374 1.2580 25 1 -0.3632 0.5874 0.8433 26 1 -0.3633 0.4367 -0.9302 27 1 -0.3633 -1.0239 0.0870 28 1 0.7095 1.1620 -3.4843 29 1 1.8729 0.9526 2.4976 30 1 0.4054 -0.0476 2.3789 31 1 1.8151 -0.6404 3.2896 32 1 5.1200 0.6348 1.5343 33 1 3.6212 1.3976 0.9514 34 1 3.7464 0.8601 2.6436 35 1 5.0786 -3.5877 3.8607 36 1 7.4089 -4.3714 3.8210 37 1 8.9842 -3.4792 2.1558 38 1 8.2444 -1.7917 0.5261 39 1 5.9167 -0.9993 0.5392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = 2.306704 kcal Electronic energy + Delta-G solvation = -19931.826544 eV Core-core repulsion = 17032.990421 eV Total energy + Delta-G solvation = -2898.836123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00079 -38.24695 -36.63879 -33.11484 -31.84675 -30.93539 -30.15989 -28.12880 -26.09077 -24.95718 -24.05676 -22.68509 -21.98714 -19.62859 -18.67261 -17.17348 -16.16611 -15.71735 -15.48283 -15.22282 -14.42814 -14.39937 -14.12219 -13.67838 -13.44057 -13.35062 -13.01538 -12.61289 -12.28630 -11.80252 -11.75171 -11.61667 -11.41186 -11.06584 -11.04619 -10.80987 -10.70924 -10.64207 -10.22228 -10.08438 -9.90941 -8.99583 -8.94448 -8.90185 -8.85698 -8.43646 -7.11696 -6.03488 -4.08734 0.81048 1.37294 2.73456 3.27261 3.36008 3.39901 3.89122 4.24230 4.39964 4.83428 4.90980 5.02758 5.10810 5.27975 5.35396 5.42994 5.58159 5.64318 5.79260 5.90020 5.96962 6.10203 6.22135 6.28087 6.34878 6.36052 6.40933 6.50808 6.56781 6.68559 6.88787 6.91207 7.09060 7.13860 7.51635 7.71131 7.79916 7.98419 8.23245 8.32505 8.59457 8.97810 9.56666 11.02694 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.006542 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.304962 B = 4278.948003 C = 5252.826496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.210 3.790 3 H 0.003 0.997 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.520 5.520 13 C 0.015 3.985 14 C 0.045 3.955 15 H 0.123 0.877 16 C -0.173 4.173 17 C 0.401 3.599 18 O -0.442 6.442 19 C -0.157 4.157 20 C -0.067 4.067 21 C -0.137 4.137 22 C -0.098 4.098 23 C -0.134 4.134 24 C -0.071 4.071 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.100 -3.546 8.462 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.244 5.244 13 C -0.133 4.133 14 C -0.065 4.065 15 H 0.140 0.860 16 C -0.232 4.232 17 C 0.278 3.722 18 O -0.316 6.316 19 C -0.158 4.158 20 C -0.086 4.086 21 C -0.155 4.155 22 C -0.116 4.116 23 C -0.152 4.152 24 C -0.089 4.089 25 H 0.028 0.972 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.395 -4.142 8.732 14.941 hybrid contribution 0.636 0.408 -0.972 1.232 sum 12.031 -3.734 7.760 14.795 Atomic orbital electron populations 1.21847 0.97593 0.99050 1.00748 1.19309 0.92428 0.92102 0.85709 0.97960 1.21169 1.31103 1.12185 0.89842 0.92013 1.24917 0.95179 0.95031 0.98954 1.69900 1.36799 1.22960 1.23330 0.86519 0.78715 0.79665 0.83027 1.19678 1.20992 1.21105 1.62139 1.04070 1.54848 1.03319 1.22548 1.00537 0.96166 0.94076 1.21953 0.91680 0.93026 0.99890 0.85956 1.22313 1.00863 0.98178 1.01843 1.22803 0.85763 0.80762 0.82908 1.90404 1.55132 1.51392 1.34662 1.20752 0.96256 1.00224 0.98580 1.21430 0.95806 0.94350 0.96976 1.21105 0.93605 1.01067 0.99724 1.21361 0.99513 0.96059 0.94667 1.21164 0.96165 0.98289 0.99606 1.21668 0.92894 0.97784 0.96600 0.97203 0.89416 0.94748 0.93002 0.96817 0.91867 0.91519 0.92421 0.90687 0.92773 0.85131 0.85780 0.85954 0.85517 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.55 37.16 0.32 -3.02 16 2 C 0.21 5.25 1.91 -68.86 -0.13 5.12 16 3 H 0.00 0.08 6.84 -51.93 -0.36 -0.28 16 4 C -0.50 -13.47 7.70 -34.44 -0.27 -13.74 16 5 H 0.06 1.65 6.74 -52.49 -0.35 1.30 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.89 -24.88 11.30 55.43 0.63 -24.25 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.52 -11.58 4.32 -229.68 -0.99 -12.58 16 13 C 0.02 0.30 8.20 60.06 0.49 0.80 16 14 C 0.04 0.86 1.70 -68.86 -0.12 0.74 16 15 H 0.12 2.49 5.22 -51.93 -0.27 2.22 16 16 C -0.17 -2.90 7.95 37.16 0.30 -2.60 16 17 C 0.40 7.30 6.30 -30.68 -0.19 7.11 16 18 O -0.44 -8.98 14.26 5.58 0.08 -8.90 16 19 C -0.16 -2.38 5.86 -105.06 -0.62 -3.00 16 20 C -0.07 -0.91 9.60 -39.11 -0.38 -1.29 16 21 C -0.14 -1.50 10.03 -39.65 -0.40 -1.90 16 22 C -0.10 -0.99 10.04 -39.46 -0.40 -1.39 16 23 C -0.13 -1.48 10.03 -39.65 -0.40 -1.88 16 24 C -0.07 -0.95 8.72 -39.11 -0.34 -1.29 16 25 H 0.01 0.21 6.56 -51.93 -0.34 -0.13 16 26 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.01 0.26 6.32 -51.93 -0.33 -0.07 16 30 H 0.06 1.26 6.14 -51.93 -0.32 0.94 16 31 H 0.07 1.31 5.93 -51.93 -0.31 1.00 16 32 H 0.06 0.80 6.63 -51.93 -0.34 0.46 16 33 H 0.07 1.38 6.80 -51.93 -0.35 1.02 16 34 H 0.05 0.87 6.69 -51.93 -0.35 0.52 16 35 H 0.13 1.74 7.65 -52.49 -0.40 1.34 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.77 5.86 -52.49 -0.31 1.46 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -29.71 306.57 -8.07 -37.78 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.16 Total: 2.28 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.22 Total: -14.80 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.37 Total: -36.83 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.71 -8.07 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.091 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds