Wall clock time and date at job start Mon Mar 30 2020 06:26:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.47148 * 2 1
4 4 C 1.50710 * 109.46904 * 240.00259 * 2 1 3
5 5 H 1.07999 * 119.99973 * 240.00266 * 4 2 1
6 6 C 1.37876 * 119.99957 * 59.99992 * 4 2 1
7 7 N 1.31520 * 119.99686 * 0.02562 * 6 4 2
8 8 Si 1.86797 * 120.00203 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46698 * 0.02562 * 8 6 4
10 10 H 1.48495 * 109.47118 * 119.99852 * 8 6 4
11 11 H 1.48494 * 109.47406 * 240.00363 * 8 6 4
12 12 N 1.46896 * 109.47122 * 120.00415 * 2 1 3
13 13 C 1.46896 * 111.00225 * 302.81931 * 12 2 1
14 14 C 1.46903 * 110.99897 * 178.86536 * 12 2 1
15 15 H 1.08998 * 109.47209 * 316.01597 * 14 12 2
16 16 C 1.52998 * 109.47316 * 76.01794 * 14 12 2
17 17 C 1.50700 * 109.47211 * 196.01895 * 14 12 2
18 18 O 1.21253 * 119.99926 * 345.00280 * 17 14 12
19 19 C 1.47168 * 120.00164 * 164.99837 * 17 14 12
20 20 C 1.39856 * 120.17025 * 179.97438 * 19 17 14
21 21 C 1.37883 * 119.82293 * 180.02562 * 20 19 17
22 22 C 1.38411 * 120.17269 * 0.02614 * 21 20 19
23 23 C 1.38406 * 120.34829 * 0.23128 * 22 21 20
24 24 C 1.37891 * 120.16937 * 359.48907 * 23 22 21
25 25 H 1.08999 * 109.46618 * 304.85791 * 1 2 3
26 26 H 1.08995 * 109.46878 * 64.85246 * 1 2 3
27 27 H 1.08994 * 109.47151 * 184.85700 * 1 2 3
28 28 H 0.96999 * 119.99323 * 179.97438 * 7 6 4
29 29 H 1.09004 * 109.47268 * 296.04846 * 13 12 2
30 30 H 1.09000 * 109.46934 * 56.04633 * 13 12 2
31 31 H 1.08999 * 109.47548 * 176.04900 * 13 12 2
32 32 H 1.08994 * 109.47776 * 185.62448 * 16 14 12
33 33 H 1.09000 * 109.46978 * 305.62589 * 16 14 12
34 34 H 1.09004 * 109.47001 * 65.62198 * 16 14 12
35 35 H 1.07994 * 120.08571 * 0.02562 * 20 19 17
36 36 H 1.08003 * 119.91669 * 179.97438 * 21 20 19
37 37 H 1.07999 * 119.82192 * 179.97438 * 22 21 20
38 38 H 1.08002 * 119.91218 * 179.72444 * 23 22 21
39 39 H 1.07996 * 120.08378 * 180.23442 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.6532 -1.5885 -1.1316
6 6 1.6992 -0.2393 -2.4828
7 7 0.9435 0.8304 -2.6033
8 14 2.3224 -1.1193 -4.0081
9 1 3.1473 -2.2862 -3.6040
10 1 1.1677 -1.5863 -4.8166
11 1 3.1471 -0.1856 -4.8162
12 7 2.0197 -0.6926 1.1993
13 6 1.4944 -0.0666 2.4201
14 6 3.4879 -0.7357 1.2198
15 1 3.8574 -1.0016 0.2294
16 6 4.0331 0.6379 1.6157
17 6 3.9464 -1.7655 2.2200
18 8 3.1675 -2.2032 3.0397
19 6 5.3394 -2.2399 2.2018
20 6 5.7688 -3.1951 3.1288
21 6 7.0756 -3.6341 3.1056
22 6 7.9618 -3.1316 2.1686
23 6 7.5459 -2.1823 1.2513
24 6 6.2407 -1.7374 1.2580
25 1 -0.3632 0.5874 0.8433
26 1 -0.3633 0.4367 -0.9302
27 1 -0.3633 -1.0239 0.0870
28 1 0.7095 1.1620 -3.4843
29 1 1.8729 0.9526 2.4976
30 1 0.4054 -0.0476 2.3789
31 1 1.8151 -0.6404 3.2896
32 1 5.1200 0.6348 1.5343
33 1 3.6212 1.3976 0.9514
34 1 3.7464 0.8601 2.6436
35 1 5.0786 -3.5877 3.8607
36 1 7.4089 -4.3714 3.8210
37 1 8.9842 -3.4792 2.1558
38 1 8.2444 -1.7917 0.5261
39 1 5.9167 -0.9993 0.5392
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000063087390.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:02
Heat of formation + Delta-G solvation = 2.306704 kcal
Electronic energy + Delta-G solvation = -19931.826544 eV
Core-core repulsion = 17032.990421 eV
Total energy + Delta-G solvation = -2898.836123 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.00079 -38.24695 -36.63879 -33.11484 -31.84675 -30.93539 -30.15989 -28.12880
-26.09077 -24.95718 -24.05676 -22.68509 -21.98714 -19.62859 -18.67261 -17.17348
-16.16611 -15.71735 -15.48283 -15.22282 -14.42814 -14.39937 -14.12219 -13.67838
-13.44057 -13.35062 -13.01538 -12.61289 -12.28630 -11.80252 -11.75171 -11.61667
-11.41186 -11.06584 -11.04619 -10.80987 -10.70924 -10.64207 -10.22228 -10.08438
-9.90941 -8.99583 -8.94448 -8.90185 -8.85698 -8.43646 -7.11696 -6.03488
-4.08734 0.81048 1.37294 2.73456 3.27261 3.36008 3.39901 3.89122
4.24230 4.39964 4.83428 4.90980 5.02758 5.10810 5.27975 5.35396
5.42994 5.58159 5.64318 5.79260 5.90020 5.96962 6.10203 6.22135
6.28087 6.34878 6.36052 6.40933 6.50808 6.56781 6.68559 6.88787
6.91207 7.09060 7.13860 7.51635 7.71131 7.79916 7.98419 8.23245
8.32505 8.59457 8.97810 9.56666 11.02694
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.019355 B = 0.006542 C = 0.005329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.304962 B = 4278.948003 C = 5252.826496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.210 3.790
3 H 0.003 0.997
4 C -0.505 4.505
5 H 0.062 0.938
6 C 0.061 3.939
7 N -0.891 5.891
8 Si 0.893 3.107
9 H -0.272 1.272
10 H -0.284 1.284
11 H -0.285 1.285
12 N -0.520 5.520
13 C 0.015 3.985
14 C 0.045 3.955
15 H 0.123 0.877
16 C -0.173 4.173
17 C 0.401 3.599
18 O -0.442 6.442
19 C -0.157 4.157
20 C -0.067 4.067
21 C -0.137 4.137
22 C -0.098 4.098
23 C -0.134 4.134
24 C -0.071 4.071
25 H 0.009 0.991
26 H 0.087 0.913
27 H 0.033 0.967
28 H 0.260 0.740
29 H 0.013 0.987
30 H 0.063 0.937
31 H 0.066 0.934
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.053 0.947
35 H 0.131 0.869
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.127 0.873
39 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.100 -3.546 8.462 15.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.105 3.895
3 H 0.020 0.980
4 C -0.543 4.543
5 H 0.080 0.920
6 C -0.141 4.141
7 N -0.530 5.530
8 Si 0.721 3.279
9 H -0.197 1.197
10 H -0.210 1.210
11 H -0.211 1.211
12 N -0.244 5.244
13 C -0.133 4.133
14 C -0.065 4.065
15 H 0.140 0.860
16 C -0.232 4.232
17 C 0.278 3.722
18 O -0.316 6.316
19 C -0.158 4.158
20 C -0.086 4.086
21 C -0.155 4.155
22 C -0.116 4.116
23 C -0.152 4.152
24 C -0.089 4.089
25 H 0.028 0.972
26 H 0.106 0.894
27 H 0.053 0.947
28 H 0.070 0.930
29 H 0.032 0.968
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.072 0.928
35 H 0.149 0.851
36 H 0.142 0.858
37 H 0.140 0.860
38 H 0.145 0.855
39 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 11.395 -4.142 8.732 14.941
hybrid contribution 0.636 0.408 -0.972 1.232
sum 12.031 -3.734 7.760 14.795
Atomic orbital electron populations
1.21847 0.97593 0.99050 1.00748 1.19309 0.92428 0.92102 0.85709
0.97960 1.21169 1.31103 1.12185 0.89842 0.92013 1.24917 0.95179
0.95031 0.98954 1.69900 1.36799 1.22960 1.23330 0.86519 0.78715
0.79665 0.83027 1.19678 1.20992 1.21105 1.62139 1.04070 1.54848
1.03319 1.22548 1.00537 0.96166 0.94076 1.21953 0.91680 0.93026
0.99890 0.85956 1.22313 1.00863 0.98178 1.01843 1.22803 0.85763
0.80762 0.82908 1.90404 1.55132 1.51392 1.34662 1.20752 0.96256
1.00224 0.98580 1.21430 0.95806 0.94350 0.96976 1.21105 0.93605
1.01067 0.99724 1.21361 0.99513 0.96059 0.94667 1.21164 0.96165
0.98289 0.99606 1.21668 0.92894 0.97784 0.96600 0.97203 0.89416
0.94748 0.93002 0.96817 0.91867 0.91519 0.92421 0.90687 0.92773
0.85131 0.85780 0.85954 0.85517 0.84462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.33 8.55 37.16 0.32 -3.02 16
2 C 0.21 5.25 1.91 -68.86 -0.13 5.12 16
3 H 0.00 0.08 6.84 -51.93 -0.36 -0.28 16
4 C -0.50 -13.47 7.70 -34.44 -0.27 -13.74 16
5 H 0.06 1.65 6.74 -52.49 -0.35 1.30 16
6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16
7 N -0.89 -24.88 11.30 55.43 0.63 -24.25 16
8 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16
9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
12 N -0.52 -11.58 4.32 -229.68 -0.99 -12.58 16
13 C 0.02 0.30 8.20 60.06 0.49 0.80 16
14 C 0.04 0.86 1.70 -68.86 -0.12 0.74 16
15 H 0.12 2.49 5.22 -51.93 -0.27 2.22 16
16 C -0.17 -2.90 7.95 37.16 0.30 -2.60 16
17 C 0.40 7.30 6.30 -30.68 -0.19 7.11 16
18 O -0.44 -8.98 14.26 5.58 0.08 -8.90 16
19 C -0.16 -2.38 5.86 -105.06 -0.62 -3.00 16
20 C -0.07 -0.91 9.60 -39.11 -0.38 -1.29 16
21 C -0.14 -1.50 10.03 -39.65 -0.40 -1.90 16
22 C -0.10 -0.99 10.04 -39.46 -0.40 -1.39 16
23 C -0.13 -1.48 10.03 -39.65 -0.40 -1.88 16
24 C -0.07 -0.95 8.72 -39.11 -0.34 -1.29 16
25 H 0.01 0.21 6.56 -51.93 -0.34 -0.13 16
26 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16
27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16
28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
29 H 0.01 0.26 6.32 -51.93 -0.33 -0.07 16
30 H 0.06 1.26 6.14 -51.93 -0.32 0.94 16
31 H 0.07 1.31 5.93 -51.93 -0.31 1.00 16
32 H 0.06 0.80 6.63 -51.93 -0.34 0.46 16
33 H 0.07 1.38 6.80 -51.93 -0.35 1.02 16
34 H 0.05 0.87 6.69 -51.93 -0.35 0.52 16
35 H 0.13 1.74 7.65 -52.49 -0.40 1.34 16
36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16
37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16
39 H 0.14 1.77 5.86 -52.49 -0.31 1.46 16
LS Contribution 306.57 15.07 4.62 4.62
Total: -1.00 -29.71 306.57 -8.07 -37.78
By element:
Atomic # 1 Polarization: 7.45 SS G_CDS: -5.16 Total: 2.28 kcal
Atomic # 6 Polarization: -12.58 SS G_CDS: -2.22 Total: -14.80 kcal
Atomic # 7 Polarization: -36.46 SS G_CDS: -0.37 Total: -36.83 kcal
Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.71 -8.07 -37.78 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063087390.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.091 kcal
(2) G-P(sol) polarization free energy of solvation -29.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds