Wall clock time and date at job start Mon Mar 30 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47148 * 2 1 4 4 C 1.50710 * 109.46904 * 240.00259 * 2 1 3 5 5 H 1.07999 * 119.99973 * 240.00266 * 4 2 1 6 6 C 1.37876 * 119.99957 * 59.99992 * 4 2 1 7 7 N 1.31520 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00203 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46698 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47118 * 119.99852 * 8 6 4 11 11 H 1.48494 * 109.47406 * 240.00363 * 8 6 4 12 12 N 1.46896 * 109.47122 * 120.00415 * 2 1 3 13 13 C 1.46896 * 111.00225 * 302.81931 * 12 2 1 14 14 C 1.46903 * 110.99897 * 178.86536 * 12 2 1 15 15 H 1.08998 * 109.47209 * 316.01597 * 14 12 2 16 16 C 1.52998 * 109.47316 * 76.01794 * 14 12 2 17 17 C 1.50700 * 109.47211 * 196.01895 * 14 12 2 18 18 O 1.21253 * 119.99926 * 345.00280 * 17 14 12 19 19 C 1.47168 * 120.00164 * 164.99837 * 17 14 12 20 20 C 1.39856 * 120.17025 * 179.97438 * 19 17 14 21 21 C 1.37883 * 119.82293 * 180.02562 * 20 19 17 22 22 C 1.38411 * 120.17269 * 0.02614 * 21 20 19 23 23 C 1.38406 * 120.34829 * 0.23128 * 22 21 20 24 24 C 1.37891 * 120.16937 * 359.48907 * 23 22 21 25 25 H 1.08999 * 109.46618 * 304.85791 * 1 2 3 26 26 H 1.08995 * 109.46878 * 64.85246 * 1 2 3 27 27 H 1.08994 * 109.47151 * 184.85700 * 1 2 3 28 28 H 0.96999 * 119.99323 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47268 * 296.04846 * 13 12 2 30 30 H 1.09000 * 109.46934 * 56.04633 * 13 12 2 31 31 H 1.08999 * 109.47548 * 176.04900 * 13 12 2 32 32 H 1.08994 * 109.47776 * 185.62448 * 16 14 12 33 33 H 1.09000 * 109.46978 * 305.62589 * 16 14 12 34 34 H 1.09004 * 109.47001 * 65.62198 * 16 14 12 35 35 H 1.07994 * 120.08571 * 0.02562 * 20 19 17 36 36 H 1.08003 * 119.91669 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.82192 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.91218 * 179.72444 * 23 22 21 39 39 H 1.07996 * 120.08378 * 180.23442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1677 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0197 -0.6926 1.1993 13 6 1.4944 -0.0666 2.4201 14 6 3.4879 -0.7357 1.2198 15 1 3.8574 -1.0016 0.2294 16 6 4.0331 0.6379 1.6157 17 6 3.9464 -1.7655 2.2200 18 8 3.1675 -2.2032 3.0397 19 6 5.3394 -2.2399 2.2018 20 6 5.7688 -3.1951 3.1288 21 6 7.0756 -3.6341 3.1056 22 6 7.9618 -3.1316 2.1686 23 6 7.5459 -2.1823 1.2513 24 6 6.2407 -1.7374 1.2580 25 1 -0.3632 0.5874 0.8433 26 1 -0.3633 0.4367 -0.9302 27 1 -0.3633 -1.0239 0.0870 28 1 0.7095 1.1620 -3.4843 29 1 1.8729 0.9526 2.4976 30 1 0.4054 -0.0476 2.3789 31 1 1.8151 -0.6404 3.2896 32 1 5.1200 0.6348 1.5343 33 1 3.6212 1.3976 0.9514 34 1 3.7464 0.8601 2.6436 35 1 5.0786 -3.5877 3.8607 36 1 7.4089 -4.3714 3.8210 37 1 8.9842 -3.4792 2.1558 38 1 8.2444 -1.7917 0.5261 39 1 5.9167 -0.9993 0.5392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:01 Heat of formation + Delta-G solvation = -14.943520 kcal Electronic energy + Delta-G solvation = -19932.574570 eV Core-core repulsion = 17032.990421 eV Total energy + Delta-G solvation = -2899.584149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31773 -39.42580 -38.26450 -35.03337 -33.23841 -31.88826 -31.60163 -29.87365 -27.87621 -26.54583 -25.68780 -23.81019 -23.16509 -21.24936 -20.18677 -18.38893 -18.17877 -17.09772 -16.89953 -16.48317 -16.14910 -15.68803 -15.37312 -15.16353 -14.93022 -14.65500 -14.30528 -14.11180 -13.67264 -13.46891 -13.24788 -13.01835 -12.93151 -12.62208 -12.58080 -12.48936 -12.35317 -12.17831 -11.98408 -11.91511 -11.78785 -10.88738 -10.50153 -10.37934 -9.91208 -9.88956 -8.87402 -8.10109 -6.22043 -0.26152 0.46138 1.41510 1.44849 1.50857 1.55621 2.43030 2.86637 2.92585 3.19099 3.50218 3.90194 4.07096 4.15535 4.19372 4.25837 4.37061 4.51177 4.53971 4.61147 4.64626 4.71662 4.77772 4.87168 4.94890 4.99526 5.10971 5.12898 5.18015 5.20982 5.43865 5.47694 5.52299 5.53113 5.72113 5.77356 6.00199 6.26286 6.36381 6.61483 6.74767 6.91330 7.47064 8.95731 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.006542 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.304962 B = 4278.948003 C = 5252.826496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.217 3.783 3 H -0.021 1.021 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.537 5.537 13 C 0.021 3.979 14 C 0.041 3.959 15 H 0.108 0.892 16 C -0.162 4.162 17 C 0.405 3.595 18 O -0.475 6.475 19 C -0.184 4.184 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.081 4.081 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.936 -4.551 8.553 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.111 3.889 3 H -0.004 1.004 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.261 5.261 13 C -0.127 4.127 14 C -0.069 4.069 15 H 0.126 0.874 16 C -0.221 4.221 17 C 0.284 3.716 18 O -0.351 6.351 19 C -0.185 4.185 20 C -0.098 4.098 21 C -0.151 4.151 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.100 4.100 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.172 0.828 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.249 -5.145 8.830 17.535 hybrid contribution -0.155 0.694 -0.961 1.195 sum 14.094 -4.451 7.869 16.745 Atomic orbital electron populations 1.21707 0.97749 0.98583 1.00330 1.19090 0.92297 0.90865 0.86691 1.00378 1.21361 1.31154 1.12066 0.90858 0.92638 1.25648 0.95315 0.95675 1.01674 1.70015 1.37618 1.24084 1.24009 0.85541 0.78158 0.78746 0.79438 1.19150 1.21013 1.20240 1.62061 1.06282 1.54739 1.02998 1.22503 1.00300 0.96605 0.93285 1.21990 0.89956 0.94998 0.99923 0.87390 1.22193 1.02537 0.95921 1.01415 1.22882 0.87186 0.79775 0.81743 1.90380 1.56349 1.52480 1.35925 1.20524 0.94707 1.02392 1.00900 1.21524 0.97206 0.94372 0.96696 1.21462 0.92344 1.01054 1.00282 1.21848 1.01021 0.94398 0.92947 1.21524 0.95387 0.98045 1.00186 1.21745 0.93889 0.98103 0.96225 0.95394 0.91591 0.95468 0.92890 0.95895 0.92126 0.91097 0.89531 0.92659 0.92231 0.85856 0.82819 0.82147 0.82776 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.55 71.98 0.62 -5.77 16 2 C 0.22 11.16 1.91 44.17 0.08 11.24 16 3 H -0.02 -1.17 6.84 -2.39 -0.02 -1.19 16 4 C -0.52 -28.12 7.70 25.60 0.20 -27.92 16 5 H 0.06 3.03 6.74 -2.91 -0.02 3.01 16 6 C 0.02 0.86 5.29 84.65 0.45 1.31 16 7 N -0.92 -52.06 11.30 21.45 0.24 -51.82 16 8 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.54 -24.50 4.32 -880.59 -3.81 -28.31 16 13 C 0.02 0.86 8.20 127.69 1.05 1.91 16 14 C 0.04 1.61 1.70 44.17 0.07 1.69 16 15 H 0.11 4.53 5.22 -2.39 -0.01 4.52 16 16 C -0.16 -5.45 7.95 71.98 0.57 -4.87 16 17 C 0.41 14.96 6.30 28.03 0.18 15.14 16 18 O -0.47 -19.74 14.26 -2.95 -0.04 -19.79 16 19 C -0.18 -5.49 5.86 -20.15 -0.12 -5.61 16 20 C -0.08 -2.06 9.60 22.58 0.22 -1.84 16 21 C -0.13 -2.47 10.03 22.23 0.22 -2.25 16 22 C -0.08 -1.33 10.04 22.35 0.22 -1.11 16 23 C -0.13 -2.49 10.03 22.23 0.22 -2.26 16 24 C -0.08 -2.05 8.72 22.58 0.20 -1.85 16 25 H 0.03 1.26 6.56 -2.39 -0.02 1.25 16 26 H 0.07 3.64 5.96 -2.39 -0.01 3.63 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.02 0.87 6.32 -2.38 -0.02 0.86 16 30 H 0.06 2.44 6.14 -2.39 -0.01 2.43 16 31 H 0.07 2.82 5.93 -2.39 -0.01 2.81 16 32 H 0.09 2.36 6.63 -2.39 -0.02 2.34 16 33 H 0.05 2.07 6.80 -2.39 -0.02 2.05 16 34 H 0.06 1.91 6.69 -2.38 -0.02 1.89 16 35 H 0.12 3.27 7.65 -2.91 -0.02 3.25 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.13 3.35 5.86 -2.91 -0.02 3.33 16 Total: -1.00 -65.06 306.57 3.65 -61.41 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.05 Total: 15.75 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.18 Total: -22.21 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.56 Total: -80.13 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.04 Total: -19.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.06 3.65 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.469 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds