Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.50663 * 2 1 4 4 C 1.53108 * 109.50559 * 239.91439 * 2 1 3 5 5 O 1.43013 * 109.25882 * 296.91091 * 4 2 1 6 6 C 1.43009 * 113.74000 * 301.33448 * 5 4 2 7 7 H 1.09007 * 109.50770 * 298.72937 * 6 5 4 8 8 C 1.50698 * 109.50759 * 178.60615 * 6 5 4 9 9 C 1.38238 * 119.99878 * 324.72006 * 8 6 5 10 10 C 1.38235 * 119.99963 * 179.78902 * 9 8 6 11 11 C 1.38239 * 119.99893 * 0.44263 * 10 9 8 12 12 C 1.38229 * 120.00153 * 359.81279 * 11 10 9 13 13 C 1.38234 * 120.00286 * 359.97438 * 12 11 10 14 14 C 1.53090 * 109.26509 * 58.66694 * 6 5 4 15 15 N 1.47014 * 109.51091 * 120.13256 * 2 1 3 16 16 C 1.46898 * 110.99629 * 297.54541 * 15 2 1 17 17 C 1.50711 * 109.46911 * 176.18754 * 16 15 2 18 18 H 1.08001 * 119.99654 * 5.52210 * 17 16 15 19 19 C 1.37872 * 119.99607 * 185.51708 * 17 16 15 20 20 N 1.31519 * 119.99357 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00461 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47208 * 89.99697 * 21 19 17 23 23 H 1.48501 * 109.46960 * 210.00166 * 21 19 17 24 24 H 1.48500 * 109.46710 * 329.99757 * 21 19 17 25 25 H 1.09007 * 109.47021 * 180.08500 * 1 2 3 26 26 H 1.08999 * 109.47251 * 300.08385 * 1 2 3 27 27 H 1.08998 * 109.47373 * 60.08743 * 1 2 3 28 28 H 1.09003 * 109.50243 * 176.97567 * 4 2 1 29 29 H 1.08996 * 109.54166 * 56.87181 * 4 2 1 30 30 H 1.07998 * 120.00273 * 0.02562 * 9 8 6 31 31 H 1.07998 * 120.00066 * 180.27530 * 10 9 8 32 32 H 1.08005 * 119.99807 * 179.83011 * 11 10 9 33 33 H 1.08008 * 120.00235 * 179.97438 * 12 11 10 34 34 H 1.07996 * 120.00389 * 180.02562 * 13 12 11 35 35 H 1.08995 * 109.51191 * 183.21871 * 14 6 5 36 36 H 1.09003 * 109.54072 * 63.10741 * 14 6 5 37 37 H 1.08999 * 109.46941 * 296.17992 * 16 15 2 38 38 H 1.08999 * 109.47509 * 56.18834 * 16 15 2 39 39 H 0.97002 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2488 5 8 1.6227 -2.0904 -1.2065 6 6 2.0837 -2.7982 -0.0526 7 1 3.1736 -2.8120 -0.0454 8 6 1.5621 -4.2116 -0.0876 9 6 0.3052 -4.4720 -0.6008 10 6 -0.1716 -5.7690 -0.6369 11 6 0.6049 -6.8046 -0.1514 12 6 1.8596 -6.5436 0.3667 13 6 2.3382 -5.2471 0.3988 14 6 1.5730 -2.0959 1.2082 15 7 2.0210 -0.6956 1.1985 16 6 1.5989 0.0006 2.4212 17 6 2.0392 -0.7896 3.6266 18 1 2.6546 -1.6682 3.5010 19 6 1.6564 -0.3908 4.8896 20 7 2.0402 -1.0807 5.9415 21 14 0.5915 1.1285 5.1068 22 1 -0.8409 0.7390 5.0658 23 1 0.8948 1.7627 6.4149 24 1 0.8741 2.0916 4.0124 25 1 -0.3633 -1.0277 0.0015 26 1 -0.3634 0.5151 0.8892 27 1 -0.3634 0.5125 -0.8907 28 1 3.1299 -0.6768 -1.2763 29 1 1.6338 -0.2454 -2.1395 30 1 -0.3028 -3.6626 -0.9771 31 1 -1.1517 -5.9730 -1.0420 32 1 0.2313 -7.8176 -0.1771 33 1 2.4661 -7.3526 0.7464 34 1 3.3186 -5.0432 0.8031 35 1 1.9689 -2.5985 2.0906 36 1 0.4837 -2.1294 1.2283 37 1 2.0531 0.9911 2.4504 38 1 0.5134 0.0983 2.4275 39 1 1.7712 -0.8000 6.8302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066853174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = -29.254373 kcal Electronic energy + Delta-G solvation = -20063.753016 eV Core-core repulsion = 17163.548302 eV Total energy + Delta-G solvation = -2900.204714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27594 -39.66490 -37.10245 -34.76201 -33.96904 -31.85676 -31.71695 -29.99585 -28.00708 -27.03821 -24.96066 -23.55251 -23.24131 -22.01301 -20.03382 -19.10784 -18.06239 -17.27314 -17.18536 -16.54312 -16.30717 -15.92473 -15.70149 -15.17854 -15.04254 -15.00302 -14.33124 -14.21038 -14.11016 -13.65839 -13.50284 -13.22461 -13.11429 -12.68193 -12.57678 -12.41495 -12.09331 -12.00573 -11.92813 -11.78540 -11.32209 -11.32073 -10.81865 -10.57859 -9.79822 -9.62105 -9.09721 -8.31853 -6.35646 0.40841 0.52771 1.30733 1.32308 1.43442 2.30577 2.68706 2.90276 3.02235 3.12997 3.85679 3.93651 4.00610 4.03839 4.12873 4.21265 4.25540 4.30496 4.37906 4.52996 4.66369 4.69614 4.71416 4.76787 4.80658 4.84968 4.96427 4.99534 5.09133 5.16141 5.18537 5.33603 5.47040 5.57843 5.62525 5.67997 5.91547 6.12421 6.16562 6.25924 6.58843 6.70190 7.28068 8.84193 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.006506 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.454173 B = 4302.383447 C = 5182.275621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.032 3.968 3 H 0.097 0.903 4 C 0.073 3.927 5 O -0.382 6.382 6 C 0.145 3.855 7 H 0.065 0.935 8 C -0.096 4.096 9 C -0.108 4.108 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.053 3.947 15 N -0.534 5.534 16 C 0.171 3.829 17 C -0.523 4.523 18 H 0.042 0.958 19 C 0.012 3.988 20 N -0.945 5.945 21 Si 0.944 3.056 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.248 1.248 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.031 0.969 38 H -0.007 1.007 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -5.051 -16.180 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.077 4.077 3 H 0.115 0.885 4 C -0.003 4.003 5 O -0.301 6.301 6 C 0.087 3.913 7 H 0.083 0.917 8 C -0.096 4.096 9 C -0.126 4.126 10 C -0.146 4.146 11 C -0.139 4.139 12 C -0.143 4.143 13 C -0.143 4.143 14 C -0.076 4.076 15 N -0.258 5.258 16 C 0.044 3.956 17 C -0.561 4.561 18 H 0.060 0.940 19 C -0.186 4.186 20 N -0.585 5.585 21 Si 0.767 3.233 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.172 1.172 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.011 0.989 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.487 -5.125 -16.151 17.299 hybrid contribution -0.907 0.806 1.210 1.714 sum -4.394 -4.319 -14.940 16.161 Atomic orbital electron populations 1.22290 0.96882 1.01842 1.02298 1.22588 0.94190 0.99483 0.91438 0.88494 1.22819 0.99504 0.80829 0.97167 1.87898 1.76303 1.23710 1.42181 1.20789 0.97270 0.88596 0.84695 0.91681 1.19677 0.95890 0.93243 1.00799 1.21090 0.94966 0.97772 0.98780 1.21465 1.00907 0.92179 1.00014 1.21539 0.94200 1.00350 0.97823 1.21413 0.96989 0.96266 0.99629 1.21184 1.00222 0.93123 0.99753 1.22424 0.97310 0.90064 0.97783 1.62329 1.59159 1.01861 1.02499 1.19961 0.93314 0.94598 0.87700 1.21308 1.31930 1.12095 0.90785 0.94011 1.25808 0.97347 1.00046 0.95414 1.70042 1.47710 1.41691 0.99063 0.85763 0.79093 0.80024 0.78397 1.19591 1.20495 1.17185 0.93301 0.93955 0.89573 0.92267 0.85403 0.86116 0.83699 0.83146 0.83643 0.85832 0.91909 0.95674 0.95143 0.98931 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 8.40 71.98 0.60 -4.72 16 2 C 0.03 1.02 2.99 44.93 0.13 1.15 16 3 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 4 C 0.07 1.98 6.41 72.02 0.46 2.44 16 5 O -0.38 -12.01 9.08 -148.98 -1.35 -13.36 16 6 C 0.14 5.00 3.01 29.88 0.09 5.09 16 7 H 0.07 2.28 8.05 -2.38 -0.02 2.26 16 8 C -0.10 -3.06 5.01 -19.86 -0.10 -3.16 16 9 C -0.11 -3.13 9.35 22.27 0.21 -2.93 16 10 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 11 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 12 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 13 C -0.12 -3.65 9.68 22.27 0.22 -3.43 16 14 C 0.05 2.19 4.17 86.31 0.36 2.55 16 15 N -0.53 -22.41 4.78 -874.51 -4.18 -26.58 16 16 C 0.17 8.28 3.72 85.56 0.32 8.60 16 17 C -0.52 -30.41 8.87 25.60 0.23 -30.19 16 18 H 0.04 2.70 6.63 -2.91 -0.02 2.68 16 19 C 0.01 0.68 5.47 84.65 0.46 1.14 16 20 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 21 Si 0.94 44.34 27.36 68.60 1.88 46.21 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.25 -10.83 6.70 99.48 0.67 -10.16 16 25 H 0.05 1.61 6.06 -2.38 -0.01 1.60 16 26 H 0.04 1.42 6.39 -2.39 -0.02 1.40 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.12 3.48 7.64 -2.91 -0.02 3.45 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.06 3.07 6.06 -2.39 -0.01 3.06 16 36 H 0.03 1.09 6.39 -2.39 -0.02 1.07 16 37 H 0.03 1.47 7.58 -2.39 -0.02 1.45 16 38 H -0.01 -0.33 5.31 -2.39 -0.01 -0.34 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -67.95 306.55 1.29 -66.66 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.99 Total: 17.44 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.65 Total: -31.44 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.88 Total: -85.51 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.35 Total: -13.36 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.21 kcal Total: -67.95 1.29 -66.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066853174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.406 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds