Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.54364 * 2 1 4 4 C 1.53097 * 109.50941 * 120.11282 * 2 1 3 5 5 O 1.43018 * 109.26011 * 176.78149 * 4 2 1 6 6 C 1.43011 * 113.73766 * 301.33231 * 5 4 2 7 7 H 1.09006 * 109.53618 * 298.71039 * 6 5 4 8 8 C 1.50702 * 109.50761 * 178.60824 * 6 5 4 9 9 C 1.38234 * 120.00257 * 145.21550 * 8 6 5 10 10 C 1.38238 * 119.99675 * 180.25732 * 9 8 6 11 11 C 1.38228 * 120.00110 * 359.52133 * 10 9 8 12 12 C 1.38234 * 120.00090 * 0.43562 * 11 10 9 13 13 C 1.38235 * 119.99522 * 325.18563 * 8 6 5 14 14 C 1.53092 * 109.26230 * 58.66628 * 6 5 4 15 15 N 1.47015 * 109.50453 * 239.89621 * 2 1 3 16 16 C 1.46892 * 111.00532 * 57.67089 * 15 2 1 17 17 C 1.50698 * 109.47110 * 57.58720 * 16 15 2 18 18 H 1.08003 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99928 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00354 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46958 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47242 * 119.99800 * 21 19 17 24 24 H 1.48501 * 109.47479 * 240.00516 * 21 19 17 25 25 H 1.08991 * 109.47031 * 180.10961 * 1 2 3 26 26 H 1.09008 * 109.46823 * 300.10975 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.10201 * 1 2 3 28 28 H 1.09005 * 109.50311 * 296.71300 * 4 2 1 29 29 H 1.08997 * 109.50582 * 56.79816 * 4 2 1 30 30 H 1.08002 * 119.99744 * 359.97115 * 9 8 6 31 31 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 32 32 H 1.07998 * 119.99898 * 180.21654 * 11 10 9 33 33 H 1.08001 * 120.00324 * 179.78918 * 12 11 10 34 34 H 1.07996 * 120.00471 * 0.02562 * 13 8 6 35 35 H 1.08996 * 109.50621 * 63.09192 * 14 6 5 36 36 H 1.09002 * 109.50775 * 183.17369 * 14 6 5 37 37 H 1.08997 * 109.47588 * 177.59657 * 16 15 2 38 38 H 1.09005 * 109.46875 * 297.59350 * 16 15 2 39 39 H 0.96998 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 8 3.4694 -0.7868 1.2055 6 6 3.9818 -1.4578 0.0512 7 1 3.6308 -2.4898 0.0436 8 6 5.4883 -1.4391 0.0856 9 6 6.2044 -2.5147 -0.4054 10 6 7.5862 -2.4997 -0.3690 11 6 8.2521 -1.4049 0.1494 12 6 7.5360 -0.3288 0.6396 13 6 6.1541 -0.3459 0.6076 14 6 3.4902 -0.7413 -1.2092 15 7 2.0208 -0.6951 -1.1989 16 6 1.5054 -0.0644 -2.4213 17 6 1.9095 1.3872 -2.4463 18 1 2.4914 1.7998 -1.6355 19 6 1.5372 2.1882 -3.5050 20 7 0.8289 1.6857 -4.4926 21 14 2.0387 3.9874 -3.5364 22 1 2.8257 4.3032 -2.3174 23 1 2.8665 4.2495 -4.7411 24 1 0.8231 4.8396 -3.5760 25 1 -0.3633 -1.0276 0.0020 26 1 -0.3633 0.5156 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.7274 -0.1795 2.1390 29 1 1.6325 -1.7340 1.2763 30 1 5.6841 -3.3688 -0.8133 31 1 8.1456 -3.3420 -0.7486 32 1 9.3317 -1.3917 0.1747 33 1 8.0562 0.5251 1.0477 34 1 5.5948 0.4946 0.9912 35 1 3.8862 0.2740 -1.2286 36 1 3.8318 -1.2820 -2.0919 37 1 1.9177 -0.5715 -3.2935 38 1 0.4180 -0.1391 -2.4379 39 1 0.5667 2.2494 -5.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066853175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -17.922592 kcal Electronic energy + Delta-G solvation = -19971.369538 eV Core-core repulsion = 17071.656206 eV Total energy + Delta-G solvation = -2899.713331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75979 -38.39900 -35.52694 -32.90105 -32.44286 -30.77216 -30.42464 -27.90897 -26.32533 -25.03369 -22.82737 -22.50673 -22.12284 -20.61078 -19.18600 -16.92697 -16.34302 -16.02682 -15.56536 -15.12930 -14.66399 -14.46909 -14.19691 -13.98459 -13.62382 -13.21659 -12.90551 -12.62326 -12.54236 -12.03479 -11.70318 -11.50236 -11.16710 -11.02100 -10.96794 -10.91329 -10.79431 -10.52274 -10.24304 -10.12277 -9.79879 -9.68000 -9.11315 -8.77930 -8.50551 -8.41525 -7.25792 -6.06191 -4.14863 1.45448 1.54907 3.24308 3.32803 3.36710 3.85101 4.13791 4.38383 4.81062 5.02927 5.06958 5.15710 5.24238 5.27863 5.44481 5.55715 5.58843 5.69091 5.76768 5.81336 5.87767 6.06589 6.11420 6.17974 6.19230 6.33195 6.43334 6.58411 6.64480 6.65739 6.76164 6.87051 6.93297 7.12152 7.19659 7.50378 7.57316 7.86845 7.97193 8.19264 8.25225 8.94807 9.52159 10.99080 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.006313 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.721841 B = 4434.102358 C = 5202.648960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.069 3.931 5 O -0.384 6.384 6 C 0.132 3.868 7 H 0.068 0.932 8 C -0.071 4.071 9 C -0.110 4.110 10 C -0.124 4.124 11 C -0.125 4.125 12 C -0.125 4.125 13 C -0.091 4.091 14 C 0.041 3.959 15 N -0.536 5.536 16 C 0.185 3.815 17 C -0.547 4.547 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 -6.652 9.906 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.075 0.925 4 C -0.008 4.008 5 O -0.303 6.303 6 C 0.074 3.926 7 H 0.086 0.914 8 C -0.071 4.071 9 C -0.128 4.128 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.109 4.109 14 C -0.088 4.088 15 N -0.261 5.261 16 C 0.060 3.940 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.351 -7.018 9.883 14.719 hybrid contribution 0.369 1.893 -0.495 1.991 sum 8.720 -5.125 9.387 13.800 Atomic orbital electron populations 1.21705 0.94392 1.01345 1.02072 1.22072 0.95904 0.97281 0.90598 0.92512 1.22771 0.80154 0.99883 0.97965 1.87886 1.21145 1.78643 1.42635 1.20978 0.89034 0.96134 0.86454 0.91439 1.19694 0.94165 0.94563 0.98718 1.20952 0.94119 0.97912 0.99837 1.21037 0.94187 0.98495 1.00501 1.21105 0.99568 0.94167 0.99506 1.21151 0.94214 0.98521 1.00414 1.21055 0.93980 0.98090 0.97784 1.22485 0.90336 0.99984 0.95981 1.62786 1.06389 1.52914 1.04003 1.19805 0.96300 0.92030 0.85850 1.21750 1.34656 0.96171 1.06056 0.92483 1.24939 0.94874 0.98425 0.95436 1.69948 1.37401 1.35986 1.09563 0.86620 0.78421 0.85480 0.78037 1.19834 1.20939 1.20889 0.93011 0.93535 0.90655 0.89359 0.93092 0.85951 0.86196 0.86449 0.86278 0.85554 0.93249 0.90757 0.95264 0.94295 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.89 37.16 0.33 -2.13 16 2 C 0.05 0.98 2.20 -67.60 -0.15 0.83 16 3 H 0.06 1.25 6.42 -51.93 -0.33 0.92 16 4 C 0.07 1.14 6.29 37.21 0.23 1.37 16 5 O -0.38 -6.77 9.61 -35.23 -0.34 -7.11 16 6 C 0.13 2.25 3.02 -27.83 -0.08 2.16 16 7 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 8 C -0.07 -1.11 5.01 -104.62 -0.52 -1.63 16 9 C -0.11 -1.49 9.68 -39.58 -0.38 -1.87 16 10 C -0.12 -1.49 10.05 -39.59 -0.40 -1.88 16 11 C -0.13 -1.48 10.05 -39.59 -0.40 -1.88 16 12 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 13 C -0.09 -1.39 9.35 -39.58 -0.37 -1.76 16 14 C 0.04 0.82 4.65 -3.71 -0.02 0.80 16 15 N -0.54 -11.43 4.75 -227.78 -1.08 -12.51 16 16 C 0.19 4.69 4.63 -4.98 -0.02 4.67 16 17 C -0.55 -14.87 7.66 -34.44 -0.26 -15.13 16 18 H 0.06 1.57 5.79 -52.48 -0.30 1.27 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.07 1.56 6.43 -51.93 -0.33 1.23 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.99 7.62 -52.49 -0.40 1.59 16 35 H 0.05 1.11 6.93 -51.93 -0.36 0.75 16 36 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 37 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.04 1.04 6.40 -51.93 -0.33 0.71 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -29.36 312.47 -9.38 -38.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.84 Total: 1.65 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.54 Total: -16.73 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.34 Total: -37.68 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.34 Total: -7.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.36 -9.38 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066853175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.814 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds