Wall clock time and date at job start Mon Mar 30 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.54364 * 2 1 4 4 C 1.53097 * 109.50941 * 120.11282 * 2 1 3 5 5 O 1.43018 * 109.26011 * 176.78149 * 4 2 1 6 6 C 1.43011 * 113.73766 * 301.33231 * 5 4 2 7 7 H 1.09006 * 109.53618 * 298.71039 * 6 5 4 8 8 C 1.50702 * 109.50761 * 178.60824 * 6 5 4 9 9 C 1.38234 * 120.00257 * 145.21550 * 8 6 5 10 10 C 1.38238 * 119.99675 * 180.25732 * 9 8 6 11 11 C 1.38228 * 120.00110 * 359.52133 * 10 9 8 12 12 C 1.38234 * 120.00090 * 0.43562 * 11 10 9 13 13 C 1.38235 * 119.99522 * 325.18563 * 8 6 5 14 14 C 1.53092 * 109.26230 * 58.66628 * 6 5 4 15 15 N 1.47015 * 109.50453 * 239.89621 * 2 1 3 16 16 C 1.46892 * 111.00532 * 57.67089 * 15 2 1 17 17 C 1.50698 * 109.47110 * 57.58720 * 16 15 2 18 18 H 1.08003 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99928 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00354 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46958 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47242 * 119.99800 * 21 19 17 24 24 H 1.48501 * 109.47479 * 240.00516 * 21 19 17 25 25 H 1.08991 * 109.47031 * 180.10961 * 1 2 3 26 26 H 1.09008 * 109.46823 * 300.10975 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.10201 * 1 2 3 28 28 H 1.09005 * 109.50311 * 296.71300 * 4 2 1 29 29 H 1.08997 * 109.50582 * 56.79816 * 4 2 1 30 30 H 1.08002 * 119.99744 * 359.97115 * 9 8 6 31 31 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 32 32 H 1.07998 * 119.99898 * 180.21654 * 11 10 9 33 33 H 1.08001 * 120.00324 * 179.78918 * 12 11 10 34 34 H 1.07996 * 120.00471 * 0.02562 * 13 8 6 35 35 H 1.08996 * 109.50621 * 63.09192 * 14 6 5 36 36 H 1.09002 * 109.50775 * 183.17369 * 14 6 5 37 37 H 1.08997 * 109.47588 * 177.59657 * 16 15 2 38 38 H 1.09005 * 109.46875 * 297.59350 * 16 15 2 39 39 H 0.96998 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 8 3.4694 -0.7868 1.2055 6 6 3.9818 -1.4578 0.0512 7 1 3.6308 -2.4898 0.0436 8 6 5.4883 -1.4391 0.0856 9 6 6.2044 -2.5147 -0.4054 10 6 7.5862 -2.4997 -0.3690 11 6 8.2521 -1.4049 0.1494 12 6 7.5360 -0.3288 0.6396 13 6 6.1541 -0.3459 0.6076 14 6 3.4902 -0.7413 -1.2092 15 7 2.0208 -0.6951 -1.1989 16 6 1.5054 -0.0644 -2.4213 17 6 1.9095 1.3872 -2.4463 18 1 2.4914 1.7998 -1.6355 19 6 1.5372 2.1882 -3.5050 20 7 0.8289 1.6857 -4.4926 21 14 2.0387 3.9874 -3.5364 22 1 2.8257 4.3032 -2.3174 23 1 2.8665 4.2495 -4.7411 24 1 0.8231 4.8396 -3.5760 25 1 -0.3633 -1.0276 0.0020 26 1 -0.3633 0.5156 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.7274 -0.1795 2.1390 29 1 1.6325 -1.7340 1.2763 30 1 5.6841 -3.3688 -0.8133 31 1 8.1456 -3.3420 -0.7486 32 1 9.3317 -1.3917 0.1747 33 1 8.0562 0.5251 1.0477 34 1 5.5948 0.4946 0.9912 35 1 3.8862 0.2740 -1.2286 36 1 3.8318 -1.2820 -2.0919 37 1 1.9177 -0.5715 -3.2935 38 1 0.4180 -0.1391 -2.4379 39 1 0.5667 2.2494 -5.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066853175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:02 Heat of formation + Delta-G solvation = -35.886110 kcal Electronic energy + Delta-G solvation = -19972.148494 eV Core-core repulsion = 17071.656206 eV Total energy + Delta-G solvation = -2900.492288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11095 -39.61353 -37.16296 -34.62674 -34.12834 -31.88956 -31.69892 -29.69463 -27.74928 -26.82899 -24.26695 -24.04466 -23.37090 -21.86191 -20.87407 -18.42888 -18.04680 -17.42946 -16.98487 -16.55343 -16.38357 -15.92054 -15.53941 -15.33437 -15.07590 -14.69038 -14.21942 -14.11693 -13.85489 -13.58647 -13.24931 -13.06888 -12.92849 -12.82546 -12.55775 -12.30799 -12.20896 -12.02096 -11.84369 -11.80997 -11.75340 -11.28956 -10.65453 -10.52279 -9.79299 -9.61209 -9.12789 -8.20098 -6.38081 0.41302 0.53202 1.30727 1.32696 1.43845 2.33117 2.69872 2.93480 3.05615 3.21718 3.86110 3.94439 4.03429 4.09540 4.22676 4.26808 4.30465 4.35201 4.43892 4.58960 4.67592 4.72379 4.74707 4.87878 4.91989 5.00435 5.09737 5.15789 5.19108 5.25265 5.32718 5.41360 5.58120 5.63403 5.67960 5.73355 5.99192 6.12747 6.17403 6.21321 6.42112 6.80723 7.32718 8.83120 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.006313 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.721841 B = 4434.102358 C = 5202.648960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.048 3.952 3 H 0.024 0.976 4 C 0.074 3.926 5 O -0.392 6.392 6 C 0.143 3.857 7 H 0.078 0.922 8 C -0.096 4.096 9 C -0.118 4.118 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.130 4.130 13 C -0.114 4.114 14 C 0.047 3.953 15 N -0.533 5.533 16 C 0.200 3.800 17 C -0.552 4.552 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.923 5.923 21 Si 0.951 3.049 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.017 0.983 36 H 0.068 0.932 37 H 0.001 0.999 38 H 0.022 0.978 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 -7.142 11.230 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.061 4.061 3 H 0.043 0.957 4 C -0.003 4.003 5 O -0.311 6.311 6 C 0.085 3.915 7 H 0.096 0.904 8 C -0.097 4.097 9 C -0.136 4.136 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.148 4.148 13 C -0.132 4.132 14 C -0.082 4.082 15 N -0.257 5.257 16 C 0.074 3.926 17 C -0.591 4.591 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.563 5.563 21 Si 0.777 3.223 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.040 0.960 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.920 -7.513 11.224 16.758 hybrid contribution -0.069 2.005 -0.898 2.199 sum 9.851 -5.508 10.326 15.297 Atomic orbital electron populations 1.21632 0.93150 1.02170 1.01795 1.22198 0.96984 0.95828 0.91107 0.95748 1.22859 0.79602 1.00729 0.97074 1.87898 1.21791 1.78804 1.42594 1.20876 0.90379 0.95765 0.84443 0.90379 1.19699 0.93208 0.95936 1.00808 1.21202 0.95153 0.97702 0.99538 1.21449 0.93626 0.99483 0.99430 1.21535 1.01263 0.93266 0.97828 1.21423 0.93316 0.99815 1.00265 1.21074 0.95254 0.97782 0.99078 1.22457 0.89235 0.98580 0.97922 1.62744 1.07296 1.52337 1.03369 1.19448 0.95068 0.91259 0.86824 1.21900 1.34251 0.97154 1.05782 0.93382 1.25723 0.94879 1.02695 0.95089 1.70050 1.38393 1.37620 1.10192 0.85607 0.78309 0.80393 0.78016 1.19720 1.20312 1.19910 0.91587 0.90411 0.94266 0.86518 0.91414 0.84598 0.83060 0.83189 0.84328 0.87289 0.96419 0.91394 0.98124 0.96013 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.89 71.98 0.64 -3.97 16 2 C 0.05 1.87 2.20 44.93 0.10 1.97 16 3 H 0.02 1.12 6.42 -2.39 -0.02 1.10 16 4 C 0.07 2.32 6.29 72.01 0.45 2.77 16 5 O -0.39 -13.62 9.61 -148.98 -1.43 -15.05 16 6 C 0.14 4.88 3.02 29.88 0.09 4.97 16 7 H 0.08 2.48 8.05 -2.38 -0.02 2.46 16 8 C -0.10 -2.96 5.01 -19.87 -0.10 -3.06 16 9 C -0.12 -3.00 9.68 22.27 0.22 -2.79 16 10 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 11 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 12 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 13 C -0.11 -3.46 9.35 22.27 0.21 -3.25 16 14 C 0.05 1.95 4.65 86.31 0.40 2.35 16 15 N -0.53 -23.45 4.75 -874.57 -4.15 -27.61 16 16 C 0.20 10.64 4.63 85.56 0.40 11.04 16 17 C -0.55 -31.17 7.66 25.60 0.20 -30.97 16 18 H 0.05 2.76 5.79 -2.91 -0.02 2.75 16 19 C 0.02 0.90 5.46 84.65 0.46 1.36 16 20 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 21 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.04 1.66 6.43 -2.39 -0.02 1.65 16 28 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.11 3.58 7.62 -2.91 -0.02 3.56 16 35 H 0.02 0.83 6.93 -2.39 -0.02 0.82 16 36 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 37 H 0.00 0.04 8.11 -2.39 -0.02 0.02 16 38 H 0.02 1.23 6.40 -2.38 -0.02 1.21 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -65.36 312.47 1.48 -63.88 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.02 Total: 13.85 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.73 Total: -27.11 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.87 Total: -82.36 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.43 Total: -15.05 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.36 1.48 -63.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066853175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds