Wall clock time and date at job start Mon Mar 30 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50324 * 2 1 4 4 C 1.53096 * 109.50562 * 239.86911 * 2 1 3 5 5 O 1.43013 * 109.25743 * 183.21415 * 4 2 1 6 6 C 1.43012 * 113.73676 * 58.67225 * 5 4 2 7 7 H 1.08998 * 109.54663 * 61.28582 * 6 5 4 8 8 C 1.50706 * 109.50622 * 181.39651 * 6 5 4 9 9 C 1.38237 * 119.99761 * 219.78559 * 8 6 5 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 6 11 11 C 1.38234 * 120.00220 * 359.94731 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00191 * 39.75661 * 8 6 5 14 14 C 1.53097 * 109.25898 * 301.32615 * 6 5 4 15 15 N 1.47009 * 109.50622 * 120.08766 * 2 1 3 16 16 C 1.46903 * 110.99826 * 302.32308 * 15 2 1 17 17 C 1.50701 * 109.46769 * 170.32091 * 16 15 2 18 18 H 1.08000 * 120.00433 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99738 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00255 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99927 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47075 * 60.00478 * 21 19 17 23 23 H 1.48500 * 109.47305 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47539 * 300.00141 * 21 19 17 25 25 H 1.09005 * 109.47155 * 299.91585 * 1 2 3 26 26 H 1.09002 * 109.47262 * 59.91409 * 1 2 3 27 27 H 1.09003 * 109.47209 * 179.91455 * 1 2 3 28 28 H 1.08997 * 109.50942 * 303.15105 * 4 2 1 29 29 H 1.09005 * 109.50820 * 63.23886 * 4 2 1 30 30 H 1.08005 * 120.00088 * 359.96779 * 9 8 6 31 31 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 32 32 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 34 34 H 1.07999 * 119.99990 * 0.02562 * 13 8 6 35 35 H 1.09004 * 109.50843 * 176.78333 * 14 6 5 36 36 H 1.08999 * 109.50755 * 296.91529 * 14 6 5 37 37 H 1.08996 * 109.47424 * 290.31856 * 16 15 2 38 38 H 1.09002 * 109.46864 * 50.32646 * 16 15 2 39 39 H 0.97004 * 120.00055 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7871 -1.2054 6 6 3.9818 -1.4578 -0.0509 7 1 3.6309 -2.4897 -0.0428 8 6 5.4884 -1.4389 -0.0853 9 6 6.2028 -2.5545 0.3096 10 6 7.5846 -2.5374 0.2775 11 6 8.2521 -1.4050 -0.1504 12 6 7.5378 -0.2877 -0.5407 13 6 6.1558 -0.3062 -0.5123 14 6 3.4903 -0.7408 1.2094 15 7 2.0209 -0.6947 1.1990 16 6 1.5055 -0.0634 2.4212 17 6 1.8285 -0.9319 3.6097 18 1 2.3636 -1.8597 3.4711 19 6 1.4410 -0.5419 4.8741 20 7 0.7889 0.5877 5.0430 21 14 1.8408 -1.6187 6.3472 22 1 3.3129 -1.7804 6.4572 23 1 1.3188 -0.9811 7.5827 24 1 1.2081 -2.9508 6.1730 25 1 -0.3634 0.5125 0.8908 26 1 -0.3634 0.5152 -0.8892 27 1 -0.3634 -1.0277 -0.0015 28 1 1.6332 -1.7347 -1.2753 29 1 1.7267 -0.1807 -2.1390 30 1 5.6813 -3.4395 0.6432 31 1 8.1428 -3.4088 0.5864 32 1 9.3317 -1.3918 -0.1759 33 1 8.0593 0.5985 -0.8708 34 1 5.5977 0.5654 -0.8208 35 1 3.8313 -1.2816 2.0922 36 1 3.8863 0.2745 1.2283 37 1 1.9699 0.9144 2.5488 38 1 0.4249 0.0552 2.3409 39 1 0.5166 0.8622 5.9326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066853176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:04 Heat of formation + Delta-G solvation = -35.050527 kcal Electronic energy + Delta-G solvation = -19797.081284 eV Core-core repulsion = 16896.625229 eV Total energy + Delta-G solvation = -2900.456054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12575 -39.61167 -37.09386 -34.81493 -34.13149 -31.95557 -31.73337 -29.73231 -27.81471 -27.02887 -24.28699 -23.80829 -23.40125 -21.90289 -20.86210 -18.61732 -18.04661 -17.38634 -16.98661 -16.57294 -16.38677 -15.95689 -15.59418 -15.40712 -15.02599 -14.66788 -14.24506 -14.17272 -14.06365 -13.72551 -13.24028 -13.06955 -12.98034 -12.76806 -12.59576 -12.45966 -12.15603 -12.09131 -11.92571 -11.89816 -11.38109 -11.30337 -10.68007 -10.51399 -9.80224 -9.63885 -9.16615 -8.23319 -6.33366 0.39602 0.52293 1.38683 1.41841 1.49695 2.37440 2.66087 2.91042 3.08904 3.14966 3.83577 3.84817 3.99281 4.02000 4.15758 4.20836 4.25096 4.28240 4.34171 4.57569 4.65299 4.66428 4.71533 4.82686 4.85855 4.89153 5.00178 5.08477 5.17403 5.19554 5.23683 5.31236 5.57237 5.60437 5.62229 5.67311 5.99950 6.11400 6.14885 6.22116 6.53640 6.80813 7.35839 8.87794 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.006486 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.339774 B = 4316.240999 C = 5609.366964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.036 3.964 3 H 0.022 0.978 4 C 0.076 3.924 5 O -0.389 6.389 6 C 0.144 3.856 7 H 0.074 0.926 8 C -0.097 4.097 9 C -0.119 4.119 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.129 4.129 13 C -0.111 4.111 14 C 0.051 3.949 15 N -0.534 5.534 16 C 0.206 3.794 17 C -0.526 4.526 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.010 0.990 37 H -0.049 1.049 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 -4.631 -12.698 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 H 0.040 0.960 4 C 0.000 4.000 5 O -0.308 6.308 6 C 0.086 3.914 7 H 0.092 0.908 8 C -0.097 4.097 9 C -0.137 4.137 10 C -0.141 4.141 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.130 4.130 14 C -0.078 4.078 15 N -0.259 5.259 16 C 0.080 3.920 17 C -0.564 4.564 18 H 0.080 0.920 19 C -0.195 4.195 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.028 0.972 37 H -0.031 1.031 38 H 0.043 0.957 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.211 -4.922 -12.729 17.045 hybrid contribution -0.189 0.841 1.413 1.655 sum 10.023 -4.081 -11.316 15.657 Atomic orbital electron populations 1.21742 0.92698 1.02751 1.02037 1.22431 0.97436 0.95377 0.92088 0.96045 1.22830 0.79633 1.00766 0.96802 1.87907 1.21714 1.78658 1.42503 1.20859 0.90494 0.95749 0.84291 0.90822 1.19667 0.93028 0.95618 1.01421 1.21218 0.95276 0.97558 0.99680 1.21443 0.93529 0.99612 0.99481 1.21549 1.01313 0.92804 0.98106 1.21440 0.93292 0.99759 1.00173 1.21074 0.95267 0.97565 0.99045 1.22488 0.88639 0.98114 0.98532 1.62367 1.07559 1.53335 1.02688 1.19474 0.94796 0.90994 0.86753 1.21411 1.36523 1.06683 0.91826 0.92047 1.25894 0.94874 0.96579 1.02114 1.70076 1.40117 1.23511 1.23673 0.85464 0.78804 0.78862 0.77698 1.19386 1.20703 1.19067 0.94248 0.89326 0.91674 0.91665 0.85723 0.85023 0.83226 0.83099 0.83987 0.86923 0.90934 0.97154 1.03103 0.95687 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.92 71.98 0.64 -3.83 16 2 C 0.04 1.32 2.59 44.93 0.12 1.44 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C 0.08 2.28 6.29 72.01 0.45 2.73 16 5 O -0.39 -13.06 9.79 -148.98 -1.46 -14.52 16 6 C 0.14 4.98 3.01 29.88 0.09 5.07 16 7 H 0.07 2.48 8.01 -2.39 -0.02 2.46 16 8 C -0.10 -3.01 4.98 -19.86 -0.10 -3.10 16 9 C -0.12 -3.16 9.67 22.27 0.22 -2.95 16 10 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 11 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 12 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 13 C -0.11 -3.27 9.36 22.27 0.21 -3.06 16 14 C 0.05 2.15 4.72 86.31 0.41 2.56 16 15 N -0.53 -24.03 4.53 -874.53 -3.96 -27.99 16 16 C 0.21 11.25 4.50 85.56 0.38 11.64 16 17 C -0.53 -30.35 8.48 25.60 0.22 -30.14 16 18 H 0.06 3.47 7.11 -2.91 -0.02 3.45 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 21 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H 0.04 1.53 6.17 -2.38 -0.01 1.51 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.13 3.15 8.04 -2.91 -0.02 3.13 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.11 3.44 7.77 -2.91 -0.02 3.42 16 35 H 0.07 3.31 6.80 -2.39 -0.02 3.29 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H -0.05 -2.97 8.12 -2.39 -0.02 -2.99 16 38 H 0.03 1.44 5.77 -2.39 -0.01 1.43 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -67.49 315.71 1.67 -65.81 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.01 Total: 12.91 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.77 Total: -26.38 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.68 Total: -84.50 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.46 Total: -14.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.49 1.67 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066853176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.763 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds