Wall clock time and date at job start Mon Mar 30 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00006 * 2 1 4 4 C 1.38755 * 120.12223 * 359.97438 * 3 2 1 5 5 C 1.37933 * 119.76856 * 180.02562 * 4 3 2 6 6 C 1.38727 * 120.42736 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.93689 * 359.82623 * 6 5 4 8 8 C 1.38502 * 120.12603 * 179.97438 * 3 2 1 9 9 C 1.50632 * 121.84448 * 180.30605 * 7 6 5 10 10 N 1.46619 * 110.51013 * 342.45897 * 9 7 6 11 11 C 1.46906 * 110.99692 * 175.91006 * 10 9 7 12 12 H 1.08997 * 109.46915 * 186.04163 * 11 10 9 13 13 C 1.52993 * 109.47450 * 306.04534 * 11 10 9 14 14 C 1.50702 * 109.47180 * 66.04867 * 11 10 9 15 15 H 1.08005 * 119.99674 * 266.82014 * 14 11 10 16 16 C 1.37874 * 120.00276 * 86.81178 * 14 11 10 17 17 N 1.31513 * 119.99940 * 353.77172 * 16 14 11 18 18 Si 1.86797 * 120.00024 * 173.77134 * 16 14 11 19 19 H 1.48497 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47349 * 120.00100 * 18 16 14 21 21 H 1.48497 * 109.47100 * 240.00256 * 18 16 14 22 22 C 1.47159 * 110.26802 * 52.47968 * 10 9 7 23 23 C 1.50736 * 118.42447 * 179.59492 * 6 5 4 24 24 H 1.08994 * 109.47436 * 60.00429 * 1 2 3 25 25 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47376 * 299.99951 * 1 2 3 27 27 H 1.08003 * 120.11889 * 0.05317 * 4 3 2 28 28 H 1.08001 * 119.79117 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.83098 * 0.02562 * 8 3 2 30 30 H 1.09002 * 109.26946 * 222.18509 * 9 7 6 31 31 H 1.09005 * 109.26405 * 102.72117 * 9 7 6 32 32 H 1.09008 * 109.46935 * 306.30683 * 13 11 10 33 33 H 1.09001 * 109.47184 * 66.30147 * 13 11 10 34 34 H 1.08994 * 109.47679 * 186.30395 * 13 11 10 35 35 H 0.96999 * 120.00456 * 354.63355 * 17 16 14 36 36 H 1.08999 * 109.62910 * 48.43843 * 22 10 9 37 37 H 1.08994 * 109.63062 * 169.02515 * 22 10 9 38 38 H 1.08996 * 109.39044 * 283.35658 * 23 6 5 39 39 H 1.09000 * 109.38875 * 43.16319 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2927 2.3762 -0.0005 5 6 1.9265 3.6013 -0.0011 6 6 3.3118 3.6757 -0.0016 7 6 4.0630 2.5194 0.0020 8 6 3.4289 1.2864 0.0005 9 6 5.5690 2.5501 0.0084 10 7 6.0577 3.8695 -0.4038 11 6 7.5219 3.9420 -0.3085 12 1 7.8495 4.9606 -0.5161 13 6 7.9616 3.5422 1.1013 14 6 8.1378 3.0018 -1.3124 15 1 8.3982 1.9951 -1.0204 16 6 8.3686 3.4266 -2.6036 17 7 7.9412 4.6076 -2.9935 18 14 9.2885 2.3247 -3.7990 19 1 9.6591 1.0575 -3.1192 20 1 8.4191 2.0245 -4.9649 21 1 10.5181 3.0158 -4.2633 22 6 5.4238 4.9234 0.4044 23 6 3.9572 5.0379 -0.0115 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2140 2.3242 -0.0001 28 1 1.3406 4.5086 -0.0011 29 1 4.0165 0.3802 0.0005 30 1 5.9471 1.7949 -0.6807 31 1 5.9289 2.3312 1.0138 32 1 7.4297 4.1496 1.8337 33 1 7.7336 2.4894 1.2682 34 1 9.0345 3.7027 1.2066 35 1 7.3969 5.1471 -2.3989 36 1 5.4854 4.6616 1.4607 37 1 5.9294 5.8730 0.2295 38 1 3.8975 5.4593 -1.0150 39 1 3.4344 5.6911 0.6871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:12 Heat of formation + Delta-G solvation = -14.156964 kcal Electronic energy + Delta-G solvation = -19875.705371 eV Core-core repulsion = 16976.155330 eV Total energy + Delta-G solvation = -2899.550042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16307 -38.55354 -36.43808 -33.26074 -32.13333 -31.03894 -29.06061 -28.37859 -26.79763 -24.69424 -24.29921 -22.47416 -21.92372 -20.61144 -18.79412 -17.52080 -16.72842 -15.91975 -15.69338 -15.28382 -14.94012 -14.27277 -13.97292 -13.71115 -13.43490 -13.25231 -13.21590 -12.68799 -12.57676 -12.05269 -11.91301 -11.78741 -11.53853 -11.21669 -10.92388 -10.82916 -10.70163 -10.48195 -10.20725 -10.11936 -10.06830 -9.73533 -8.52244 -8.43475 -8.35321 -7.74724 -7.08349 -6.26799 -4.02356 1.60511 1.71349 3.35135 3.48460 3.52047 3.64965 4.00186 4.57733 4.87571 4.92275 5.05275 5.07182 5.11706 5.23861 5.36653 5.52979 5.55950 5.60464 5.72678 5.91085 5.93952 6.06843 6.18105 6.24841 6.29715 6.32611 6.37819 6.51309 6.53046 6.57611 6.62110 6.75514 6.90267 7.01989 7.16714 7.24641 7.56870 7.90612 8.33318 8.49707 8.56537 8.97000 9.76108 11.12956 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.005782 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.691009 B = 4841.208436 C = 5421.511479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.086 4.086 6 C -0.100 4.100 7 C -0.023 4.023 8 C -0.151 4.151 9 C 0.100 3.900 10 N -0.515 5.515 11 C 0.188 3.812 12 H 0.048 0.952 13 C -0.168 4.168 14 C -0.588 4.588 15 H 0.047 0.953 16 C 0.034 3.966 17 N -0.900 5.900 18 Si 1.067 2.933 19 H -0.290 1.290 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.044 3.956 23 C -0.070 4.070 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.279 0.721 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.942 -3.527 7.298 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.235 4.235 5 C -0.104 4.104 6 C -0.100 4.100 7 C -0.023 4.023 8 C -0.171 4.171 9 C -0.028 4.028 10 N -0.240 5.240 11 C 0.084 3.916 12 H 0.066 0.934 13 C -0.227 4.227 14 C -0.627 4.627 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.534 5.534 18 Si 0.897 3.103 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.085 4.085 23 C -0.107 4.107 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.350 -3.682 5.269 13.923 hybrid contribution -0.887 -0.006 2.365 2.526 sum -13.237 -3.689 7.634 15.720 Atomic orbital electron populations 1.22970 0.79028 1.03414 1.01099 1.86047 1.20859 1.27336 1.89246 1.18832 0.92199 0.83824 0.98014 1.21017 0.99335 0.92456 1.10653 1.20839 0.93965 0.96766 0.98863 1.19589 0.92693 0.95433 1.02325 1.19790 0.96558 0.91292 0.94680 1.20303 0.91140 0.98294 1.07316 1.20807 0.87863 0.95100 0.99045 1.63299 1.09210 1.00178 1.51294 1.19593 0.82347 0.98319 0.91370 0.93448 1.22399 1.00565 0.99988 0.99725 1.21819 1.43872 0.99936 0.97084 0.93459 1.25702 0.96440 0.97916 0.97296 1.70618 1.32258 1.10631 1.39885 0.83588 0.76242 0.74934 0.75576 1.21629 1.21523 1.21394 1.22129 0.94086 0.97367 0.94926 1.20481 0.95518 0.92813 1.01893 0.92880 0.88638 0.93004 0.86087 0.86291 0.85450 0.88687 0.94256 0.95585 0.93731 0.93303 0.90963 0.95952 0.91333 0.90276 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.28 16 2 O -0.32 -4.60 10.50 -19.44 -0.20 -4.81 16 3 C 0.12 1.83 6.68 -39.29 -0.26 1.57 16 4 C -0.22 -3.09 9.04 -39.50 -0.36 -3.44 16 5 C -0.09 -1.29 9.65 -39.51 -0.38 -1.67 16 6 C -0.10 -1.75 5.77 -104.55 -0.60 -2.35 16 7 C -0.02 -0.43 5.79 -104.63 -0.61 -1.03 16 8 C -0.15 -2.64 9.59 -39.33 -0.38 -3.02 16 9 C 0.10 2.07 4.56 -5.16 -0.02 2.05 16 10 N -0.52 -11.56 4.63 -229.61 -1.06 -12.63 16 11 C 0.19 4.58 1.83 -68.86 -0.13 4.45 16 12 H 0.05 1.25 6.81 -51.93 -0.35 0.90 16 13 C -0.17 -3.53 8.30 37.15 0.31 -3.23 16 14 C -0.59 -15.99 7.46 -34.44 -0.26 -16.25 16 15 H 0.05 1.30 7.82 -52.48 -0.41 0.88 16 16 C 0.03 0.96 5.45 -17.82 -0.10 0.87 16 17 N -0.90 -26.81 13.56 55.43 0.75 -26.06 16 18 Si 1.07 25.19 29.91 -169.99 -5.08 20.11 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.04 0.83 4.99 -3.75 -0.02 0.81 16 23 C -0.07 -1.17 5.94 -27.93 -0.17 -1.34 16 24 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 27 H 0.12 1.37 6.32 -52.48 -0.33 1.04 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.10 2.15 7.38 -51.93 -0.38 1.77 16 31 H 0.04 0.80 6.08 -51.93 -0.32 0.48 16 32 H 0.03 0.49 6.75 -51.92 -0.35 0.14 16 33 H 0.04 0.92 6.62 -51.93 -0.34 0.58 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.28 8.31 6.92 -40.82 -0.28 8.03 16 36 H 0.02 0.41 7.09 -51.93 -0.37 0.04 16 37 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.37 308.45 -8.60 -38.97 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.68 Total: 1.07 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.98 Total: -21.30 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.31 Total: -38.68 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.37 -8.60 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.812 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds