Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00006 * 2 1 4 4 C 1.38755 * 120.12223 * 359.97438 * 3 2 1 5 5 C 1.37933 * 119.76856 * 180.02562 * 4 3 2 6 6 C 1.38727 * 120.42736 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.93689 * 359.82623 * 6 5 4 8 8 C 1.38502 * 120.12603 * 179.97438 * 3 2 1 9 9 C 1.50632 * 121.84448 * 180.30605 * 7 6 5 10 10 N 1.46619 * 110.51013 * 342.45897 * 9 7 6 11 11 C 1.46906 * 110.99692 * 175.91006 * 10 9 7 12 12 H 1.08997 * 109.46915 * 186.04163 * 11 10 9 13 13 C 1.52993 * 109.47450 * 306.04534 * 11 10 9 14 14 C 1.50702 * 109.47180 * 66.04867 * 11 10 9 15 15 H 1.08005 * 119.99674 * 266.82014 * 14 11 10 16 16 C 1.37874 * 120.00276 * 86.81178 * 14 11 10 17 17 N 1.31513 * 119.99940 * 353.77172 * 16 14 11 18 18 Si 1.86797 * 120.00024 * 173.77134 * 16 14 11 19 19 H 1.48497 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47349 * 120.00100 * 18 16 14 21 21 H 1.48497 * 109.47100 * 240.00256 * 18 16 14 22 22 C 1.47159 * 110.26802 * 52.47968 * 10 9 7 23 23 C 1.50736 * 118.42447 * 179.59492 * 6 5 4 24 24 H 1.08994 * 109.47436 * 60.00429 * 1 2 3 25 25 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47376 * 299.99951 * 1 2 3 27 27 H 1.08003 * 120.11889 * 0.05317 * 4 3 2 28 28 H 1.08001 * 119.79117 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.83098 * 0.02562 * 8 3 2 30 30 H 1.09002 * 109.26946 * 222.18509 * 9 7 6 31 31 H 1.09005 * 109.26405 * 102.72117 * 9 7 6 32 32 H 1.09008 * 109.46935 * 306.30683 * 13 11 10 33 33 H 1.09001 * 109.47184 * 66.30147 * 13 11 10 34 34 H 1.08994 * 109.47679 * 186.30395 * 13 11 10 35 35 H 0.96999 * 120.00456 * 354.63355 * 17 16 14 36 36 H 1.08999 * 109.62910 * 48.43843 * 22 10 9 37 37 H 1.08994 * 109.63062 * 169.02515 * 22 10 9 38 38 H 1.08996 * 109.39044 * 283.35658 * 23 6 5 39 39 H 1.09000 * 109.38875 * 43.16319 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2927 2.3762 -0.0005 5 6 1.9265 3.6013 -0.0011 6 6 3.3118 3.6757 -0.0016 7 6 4.0630 2.5194 0.0020 8 6 3.4289 1.2864 0.0005 9 6 5.5690 2.5501 0.0084 10 7 6.0577 3.8695 -0.4038 11 6 7.5219 3.9420 -0.3085 12 1 7.8495 4.9606 -0.5161 13 6 7.9616 3.5422 1.1013 14 6 8.1378 3.0018 -1.3124 15 1 8.3982 1.9951 -1.0204 16 6 8.3686 3.4266 -2.6036 17 7 7.9412 4.6076 -2.9935 18 14 9.2885 2.3247 -3.7990 19 1 9.6591 1.0575 -3.1192 20 1 8.4191 2.0245 -4.9649 21 1 10.5181 3.0158 -4.2633 22 6 5.4238 4.9234 0.4044 23 6 3.9572 5.0379 -0.0115 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2140 2.3242 -0.0001 28 1 1.3406 4.5086 -0.0011 29 1 4.0165 0.3802 0.0005 30 1 5.9471 1.7949 -0.6807 31 1 5.9289 2.3312 1.0138 32 1 7.4297 4.1496 1.8337 33 1 7.7336 2.4894 1.2682 34 1 9.0345 3.7027 1.2066 35 1 7.3969 5.1471 -2.3989 36 1 5.4854 4.6616 1.4607 37 1 5.9294 5.8730 0.2295 38 1 3.8975 5.4593 -1.0150 39 1 3.4344 5.6911 0.6871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -32.942939 kcal Electronic energy + Delta-G solvation = -19876.519992 eV Core-core repulsion = 16976.155330 eV Total energy + Delta-G solvation = -2900.364663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40777 -39.89859 -37.90235 -35.03898 -33.60577 -32.66102 -30.34601 -29.89831 -27.79970 -26.66823 -25.90417 -23.91868 -23.20667 -22.31427 -20.21827 -18.87031 -18.52552 -17.20335 -16.72298 -16.54122 -16.50064 -15.77546 -15.62799 -15.46983 -15.10569 -14.57893 -14.45800 -14.18845 -13.87102 -13.64140 -13.35763 -13.04538 -12.95743 -12.66111 -12.61107 -12.55143 -12.20722 -11.93728 -11.81086 -11.65716 -11.52682 -11.50258 -10.54419 -10.44917 -9.78612 -8.96601 -8.81500 -8.47990 -6.23809 0.35536 0.46946 1.55146 1.63589 1.79143 2.36300 2.61253 2.74721 3.10525 3.62256 3.80134 3.83657 3.96911 4.18308 4.27998 4.31343 4.39233 4.41396 4.41865 4.52227 4.55277 4.58607 4.70853 4.71332 4.75878 4.79363 4.89241 4.96373 5.06054 5.14758 5.21879 5.33308 5.35916 5.43396 5.70716 5.85635 5.95613 6.29019 6.48113 6.58314 6.63156 6.84208 7.61109 8.90533 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.005782 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.691009 B = 4841.208436 C = 5421.511479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.115 3.885 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.119 4.119 7 C -0.048 4.048 8 C -0.171 4.171 9 C 0.110 3.890 10 N -0.536 5.536 11 C 0.187 3.813 12 H 0.020 0.980 13 C -0.156 4.156 14 C -0.594 4.594 15 H 0.038 0.962 16 C -0.015 4.015 17 N -0.928 5.928 18 Si 1.111 2.889 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.044 3.956 23 C -0.063 4.063 24 H 0.064 0.936 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.266 0.734 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 -3.831 8.029 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.070 3.930 4 C -0.224 4.224 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.049 4.049 8 C -0.191 4.191 9 C -0.018 4.018 10 N -0.260 5.260 11 C 0.082 3.918 12 H 0.038 0.962 13 C -0.215 4.215 14 C -0.633 4.633 15 H 0.057 0.943 16 C -0.217 4.217 17 N -0.564 5.564 18 Si 0.935 3.065 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.084 4.084 23 C -0.100 4.100 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.171 0.829 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.839 -3.997 6.023 16.506 hybrid contribution -0.257 0.024 2.214 2.229 sum -15.096 -3.972 8.238 17.650 Atomic orbital electron populations 1.23351 0.76314 1.05548 1.02351 1.86034 1.23650 1.26724 1.88917 1.18907 0.91740 0.85135 0.97189 1.21422 1.01111 0.91414 1.08471 1.21180 0.92920 0.98476 0.97137 1.19754 0.94077 0.94852 1.03304 1.19655 0.95163 0.92730 0.97329 1.20325 0.92512 0.97679 1.08552 1.20591 0.89870 0.93297 0.97995 1.62967 1.08060 1.01855 1.53113 1.19431 0.83831 0.96089 0.92461 0.96191 1.22232 1.00768 1.00265 0.98263 1.22106 1.43517 0.99849 0.97791 0.94333 1.26977 0.96965 0.98373 0.99344 1.70734 1.34004 1.11780 1.39922 0.83014 0.75531 0.74079 0.73898 1.20023 1.21406 1.20365 1.22176 0.95512 0.95825 0.94875 1.20449 0.93984 0.93430 1.02120 0.91783 0.86344 0.91394 0.82431 0.82918 0.86062 0.91925 0.94254 0.93563 0.93680 0.93212 0.92324 0.95086 0.91806 0.91442 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.40 16 2 O -0.34 -9.00 10.50 -92.47 -0.97 -9.97 16 3 C 0.12 3.44 6.68 22.46 0.15 3.59 16 4 C -0.21 -5.12 9.04 22.32 0.20 -4.92 16 5 C -0.08 -2.10 9.65 22.31 0.22 -1.88 16 6 C -0.12 -3.99 5.77 -19.82 -0.11 -4.11 16 7 C -0.05 -1.83 5.79 -19.87 -0.12 -1.94 16 8 C -0.17 -6.01 9.59 22.43 0.22 -5.79 16 9 C 0.11 4.75 4.56 85.59 0.39 5.14 16 10 N -0.54 -24.70 4.63 -880.36 -4.07 -28.78 16 11 C 0.19 9.42 1.83 44.17 0.08 9.50 16 12 H 0.02 1.11 6.81 -2.39 -0.02 1.09 16 13 C -0.16 -6.65 8.30 71.98 0.60 -6.05 16 14 C -0.59 -33.31 7.46 25.60 0.19 -33.12 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 16 C -0.02 -0.88 5.45 84.65 0.46 -0.41 16 17 N -0.93 -57.04 13.56 21.45 0.29 -56.75 16 18 Si 1.11 51.57 29.91 68.60 2.05 53.62 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.04 1.68 4.99 86.21 0.43 2.11 16 23 C -0.06 -2.01 5.94 29.82 0.18 -1.84 16 24 H 0.06 0.86 7.67 -2.39 -0.02 0.84 16 25 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.07 0.84 7.67 -2.38 -0.02 0.82 16 27 H 0.16 2.72 6.32 -2.91 -0.02 2.71 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.06 3.02 7.38 -2.39 -0.02 3.00 16 31 H 0.04 1.65 6.08 -2.38 -0.01 1.63 16 32 H 0.05 1.75 6.75 -2.38 -0.02 1.73 16 33 H 0.04 1.88 6.62 -2.39 -0.02 1.87 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.27 16.57 6.92 -92.71 -0.64 15.93 16 36 H 0.03 1.11 7.09 -2.39 -0.02 1.10 16 37 H 0.06 2.43 7.87 -2.39 -0.02 2.42 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -67.64 308.45 2.45 -65.19 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.16 Total: 15.02 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.99 Total: -38.33 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -3.78 Total: -85.53 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.97 Total: -9.97 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -67.64 2.45 -65.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.244 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds