Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99669 * 2 1 4 4 C 1.38754 * 120.12574 * 359.97410 * 3 2 1 5 5 C 1.37942 * 119.76876 * 180.12579 * 4 3 2 6 6 C 1.38725 * 120.42731 * 359.94868 * 5 4 3 7 7 C 1.37880 * 119.93470 * 359.88050 * 6 5 4 8 8 C 1.38509 * 120.12494 * 179.97438 * 3 2 1 9 9 C 1.50631 * 121.84819 * 180.48397 * 7 6 5 10 10 N 1.46633 * 110.48104 * 342.34232 * 9 7 6 11 11 C 1.46900 * 111.00242 * 289.19516 * 10 9 7 12 12 H 1.09004 * 109.46859 * 58.60730 * 11 10 9 13 13 C 1.52997 * 109.47477 * 298.61112 * 11 10 9 14 14 C 1.50705 * 109.47158 * 178.60727 * 11 10 9 15 15 H 1.08001 * 119.99706 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99874 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00134 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00022 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47309 * 89.99415 * 18 16 14 20 20 H 1.48506 * 109.47130 * 209.99909 * 18 16 14 21 21 H 1.48503 * 109.46929 * 329.99528 * 18 16 14 22 22 C 1.47167 * 110.23455 * 52.60947 * 10 9 7 23 23 C 1.50739 * 118.42837 * 179.83420 * 6 5 4 24 24 H 1.08992 * 109.47138 * 60.00145 * 1 2 3 25 25 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47021 * 299.99893 * 1 2 3 27 27 H 1.07994 * 120.11856 * 0.10254 * 4 3 2 28 28 H 1.07998 * 119.78568 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.83240 * 359.97438 * 8 3 2 30 30 H 1.09000 * 109.30113 * 222.03885 * 9 7 6 31 31 H 1.09000 * 109.30389 * 102.65409 * 9 7 6 32 32 H 1.08992 * 109.47150 * 186.16048 * 13 11 10 33 33 H 1.09009 * 109.46718 * 306.16200 * 13 11 10 34 34 H 1.08998 * 109.47348 * 66.15282 * 13 11 10 35 35 H 0.96996 * 120.00086 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.62887 * 48.42406 * 22 10 9 37 37 H 1.08999 * 109.62961 * 168.81998 * 22 10 9 38 38 H 1.09001 * 109.38549 * 42.99389 * 23 6 5 39 39 H 1.08998 * 109.30382 * 283.24280 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2927 2.3763 -0.0005 5 6 1.9266 3.6014 -0.0032 6 6 3.3118 3.6758 -0.0042 7 6 4.0629 2.5196 -0.0001 8 6 3.4290 1.2865 0.0005 9 6 5.5689 2.5501 0.0098 10 7 6.0580 3.8694 -0.4027 11 6 5.8247 4.0930 -1.8358 12 1 4.7585 4.0115 -2.0473 13 6 6.5872 3.0433 -2.6466 14 6 6.3082 5.4692 -2.2147 15 1 6.7455 6.1131 -1.4660 16 6 6.1923 5.9061 -3.5172 17 7 5.6602 5.1218 -4.4291 18 14 6.7922 7.6116 -3.9872 19 1 8.2167 7.5388 -4.4003 20 1 5.9758 8.1305 -5.1140 21 1 6.6609 8.5213 -2.8208 22 6 5.4238 4.9230 0.4056 23 6 3.9573 5.0380 -0.0109 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2140 2.3243 0.0007 28 1 1.3406 4.5086 -0.0040 29 1 4.0166 0.3804 0.0014 30 1 5.9491 1.7940 -0.6771 31 1 5.9271 2.3314 1.0157 32 1 6.5038 3.2736 -3.7087 33 1 7.6374 3.0510 -2.3545 34 1 6.1638 2.0575 -2.4541 35 1 5.5789 5.4291 -5.3455 36 1 5.4850 4.6609 1.4618 37 1 5.9317 5.8721 0.2338 38 1 3.4329 5.6903 0.6874 39 1 3.8981 5.4598 -1.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -5.578774 kcal Electronic energy + Delta-G solvation = -20159.310064 eV Core-core repulsion = 17260.132001 eV Total energy + Delta-G solvation = -2899.178063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24890 -38.70063 -36.08808 -33.03993 -32.21372 -30.55869 -29.09935 -28.45552 -26.80545 -25.12127 -23.83619 -22.55656 -21.84583 -20.74059 -18.47047 -17.34730 -16.29250 -15.88921 -15.64069 -15.42863 -14.65785 -14.45873 -14.09443 -13.86233 -13.52328 -13.18585 -13.04859 -12.48034 -12.10698 -11.93709 -11.79936 -11.54749 -11.46958 -11.02985 -10.82372 -10.65741 -10.57631 -10.44856 -10.34485 -10.06636 -9.83460 -9.73610 -8.83381 -8.40322 -8.38068 -7.67035 -7.17477 -5.98227 -4.03269 1.65036 1.78167 3.31615 3.38367 3.40101 3.40915 4.05832 4.42383 4.94561 5.01895 5.11539 5.16424 5.19087 5.32363 5.36574 5.40965 5.60458 5.66267 5.77173 5.88490 6.07464 6.15911 6.23157 6.31366 6.35537 6.55359 6.62187 6.75505 6.83638 6.92432 7.05692 7.14320 7.15729 7.22139 7.59074 7.62197 7.75779 7.85403 8.23140 8.36273 8.62205 9.03704 9.61549 11.07951 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.005609 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.526143 B = 4991.038285 C = 5042.720735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.112 3.888 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.093 4.093 7 C -0.062 4.062 8 C -0.149 4.149 9 C 0.084 3.916 10 N -0.523 5.523 11 C 0.206 3.794 12 H 0.012 0.988 13 C -0.136 4.136 14 C -0.501 4.501 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.067 3.933 23 C -0.114 4.114 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.007 0.993 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -5.914 9.076 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.093 4.093 7 C -0.064 4.064 8 C -0.168 4.168 9 C -0.045 4.045 10 N -0.245 5.245 11 C 0.100 3.900 12 H 0.030 0.970 13 C -0.194 4.194 14 C -0.540 4.540 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.061 4.061 23 C -0.152 4.152 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.835 -6.071 8.945 13.351 hybrid contribution -1.072 0.933 -0.617 1.549 sum -8.907 -5.139 8.327 13.232 Atomic orbital electron populations 1.22963 0.79076 1.03345 1.01135 1.86034 1.20840 1.27386 1.89334 1.18868 0.92308 0.83780 0.98333 1.21035 0.99335 0.92492 1.10198 1.20861 0.94090 0.96770 0.98582 1.19647 0.92968 0.95514 1.01215 1.20428 0.98319 0.91514 0.96123 1.20311 0.91086 0.98134 1.07274 1.21253 0.87014 0.95213 1.01039 1.62814 1.54742 0.99387 1.07554 1.19346 0.95005 0.95057 0.80576 0.97032 1.21860 0.98384 0.95029 1.04113 1.21146 1.39684 0.98917 0.94242 0.91974 1.24919 0.95403 0.97364 0.96517 1.69900 1.44907 1.35924 1.02351 0.86575 0.78719 0.84508 0.78054 1.20719 1.21445 1.19933 1.21974 0.91302 0.97288 0.95575 1.21088 0.97708 0.92637 1.03775 0.92873 0.88681 0.93023 0.86134 0.86274 0.85674 0.89499 0.90657 0.89462 0.94893 0.97416 0.93050 0.92981 0.89724 0.91962 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.72 10.50 -19.44 -0.20 -4.92 16 3 C 0.11 1.82 6.68 -39.29 -0.26 1.56 16 4 C -0.21 -3.25 9.04 -39.50 -0.36 -3.61 16 5 C -0.08 -1.40 9.65 -39.51 -0.38 -1.78 16 6 C -0.09 -1.72 5.05 -104.55 -0.53 -2.25 16 7 C -0.06 -1.15 5.26 -104.64 -0.55 -1.70 16 8 C -0.15 -2.56 9.59 -39.33 -0.38 -2.94 16 9 C 0.08 1.56 5.38 -5.15 -0.03 1.53 16 10 N -0.52 -11.14 4.88 -229.59 -1.12 -12.26 16 11 C 0.21 5.10 1.35 -68.86 -0.09 5.01 16 12 H 0.01 0.33 5.69 -51.93 -0.30 0.03 16 13 C -0.14 -3.35 8.69 37.16 0.32 -3.03 16 14 C -0.50 -13.35 7.48 -34.44 -0.26 -13.61 16 15 H 0.06 1.64 6.41 -52.49 -0.34 1.31 16 16 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 17 N -0.89 -25.29 11.29 55.43 0.63 -24.66 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.07 1.29 5.54 -3.73 -0.02 1.27 16 23 C -0.11 -2.13 5.14 -27.92 -0.14 -2.27 16 24 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 27 H 0.12 1.50 6.32 -52.49 -0.33 1.17 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.09 1.63 5.96 -51.93 -0.31 1.33 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 2.37 5.93 -51.93 -0.31 2.07 16 33 H 0.03 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.01 0.16 6.54 -51.93 -0.34 -0.18 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.08 1.69 6.54 -51.93 -0.34 1.35 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 2.14 6.52 -51.93 -0.34 1.80 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -29.33 301.75 -8.43 -37.76 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.48 Total: 2.51 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.78 Total: -19.02 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.49 Total: -36.93 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.33 -8.43 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.185 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds