Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99669 * 2 1 4 4 C 1.38754 * 120.12574 * 359.97410 * 3 2 1 5 5 C 1.37942 * 119.76876 * 180.12579 * 4 3 2 6 6 C 1.38725 * 120.42731 * 359.94868 * 5 4 3 7 7 C 1.37880 * 119.93470 * 359.88050 * 6 5 4 8 8 C 1.38509 * 120.12494 * 179.97438 * 3 2 1 9 9 C 1.50631 * 121.84819 * 180.48397 * 7 6 5 10 10 N 1.46633 * 110.48104 * 342.34232 * 9 7 6 11 11 C 1.46900 * 111.00242 * 289.19516 * 10 9 7 12 12 H 1.09004 * 109.46859 * 58.60730 * 11 10 9 13 13 C 1.52997 * 109.47477 * 298.61112 * 11 10 9 14 14 C 1.50705 * 109.47158 * 178.60727 * 11 10 9 15 15 H 1.08001 * 119.99706 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99874 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00134 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00022 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47309 * 89.99415 * 18 16 14 20 20 H 1.48506 * 109.47130 * 209.99909 * 18 16 14 21 21 H 1.48503 * 109.46929 * 329.99528 * 18 16 14 22 22 C 1.47167 * 110.23455 * 52.60947 * 10 9 7 23 23 C 1.50739 * 118.42837 * 179.83420 * 6 5 4 24 24 H 1.08992 * 109.47138 * 60.00145 * 1 2 3 25 25 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47021 * 299.99893 * 1 2 3 27 27 H 1.07994 * 120.11856 * 0.10254 * 4 3 2 28 28 H 1.07998 * 119.78568 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.83240 * 359.97438 * 8 3 2 30 30 H 1.09000 * 109.30113 * 222.03885 * 9 7 6 31 31 H 1.09000 * 109.30389 * 102.65409 * 9 7 6 32 32 H 1.08992 * 109.47150 * 186.16048 * 13 11 10 33 33 H 1.09009 * 109.46718 * 306.16200 * 13 11 10 34 34 H 1.08998 * 109.47348 * 66.15282 * 13 11 10 35 35 H 0.96996 * 120.00086 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.62887 * 48.42406 * 22 10 9 37 37 H 1.08999 * 109.62961 * 168.81998 * 22 10 9 38 38 H 1.09001 * 109.38549 * 42.99389 * 23 6 5 39 39 H 1.08998 * 109.30382 * 283.24280 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2927 2.3763 -0.0005 5 6 1.9266 3.6014 -0.0032 6 6 3.3118 3.6758 -0.0042 7 6 4.0629 2.5196 -0.0001 8 6 3.4290 1.2865 0.0005 9 6 5.5689 2.5501 0.0098 10 7 6.0580 3.8694 -0.4027 11 6 5.8247 4.0930 -1.8358 12 1 4.7585 4.0115 -2.0473 13 6 6.5872 3.0433 -2.6466 14 6 6.3082 5.4692 -2.2147 15 1 6.7455 6.1131 -1.4660 16 6 6.1923 5.9061 -3.5172 17 7 5.6602 5.1218 -4.4291 18 14 6.7922 7.6116 -3.9872 19 1 8.2167 7.5388 -4.4003 20 1 5.9758 8.1305 -5.1140 21 1 6.6609 8.5213 -2.8208 22 6 5.4238 4.9230 0.4056 23 6 3.9573 5.0380 -0.0109 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2140 2.3243 0.0007 28 1 1.3406 4.5086 -0.0040 29 1 4.0166 0.3804 0.0014 30 1 5.9491 1.7940 -0.6771 31 1 5.9271 2.3314 1.0157 32 1 6.5038 3.2736 -3.7087 33 1 7.6374 3.0510 -2.3545 34 1 6.1638 2.0575 -2.4541 35 1 5.5789 5.4291 -5.3455 36 1 5.4850 4.6609 1.4618 37 1 5.9317 5.8721 0.2338 38 1 3.4329 5.6903 0.6874 39 1 3.8981 5.4598 -1.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = -23.484593 kcal Electronic energy + Delta-G solvation = -20160.086519 eV Core-core repulsion = 17260.132001 eV Total energy + Delta-G solvation = -2899.954518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56541 -40.00279 -37.51570 -34.95827 -33.61021 -32.19854 -30.45225 -30.02918 -27.89203 -27.04322 -25.41248 -24.02979 -23.17288 -22.35575 -19.97769 -18.61639 -18.11440 -17.35793 -16.99468 -16.63123 -16.22885 -16.04522 -15.55741 -15.42779 -15.03967 -14.52746 -14.32569 -14.08270 -13.62080 -13.41284 -13.08064 -12.96233 -12.87891 -12.74040 -12.54334 -12.46890 -12.25035 -12.05930 -11.77649 -11.71112 -11.60822 -11.35889 -10.79222 -10.44784 -9.70056 -8.95908 -8.87363 -8.05729 -6.16696 0.36746 0.48236 1.43818 1.45230 1.54454 2.38059 2.45644 2.76125 3.22682 3.45818 3.84545 3.91472 4.00842 4.22385 4.30071 4.37435 4.39534 4.44208 4.45422 4.64662 4.71296 4.78354 4.81521 4.86570 4.98753 5.05783 5.08394 5.10066 5.17975 5.34165 5.37595 5.44530 5.60921 5.74243 5.77637 5.85500 5.89068 6.32484 6.44358 6.48202 6.78369 6.98829 7.52017 8.99944 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.005609 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.526143 B = 4991.038285 C = 5042.720735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.111 3.889 4 C -0.208 4.208 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.078 4.078 8 C -0.164 4.164 9 C 0.085 3.915 10 N -0.532 5.532 11 C 0.217 3.783 12 H -0.018 1.018 13 C -0.127 4.127 14 C -0.509 4.509 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.954 3.046 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.067 3.933 23 C -0.104 4.104 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -6.073 10.337 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.066 3.934 4 C -0.227 4.227 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.080 4.080 8 C -0.183 4.183 9 C -0.043 4.043 10 N -0.254 5.254 11 C 0.111 3.889 12 H -0.001 1.001 13 C -0.185 4.185 14 C -0.547 4.547 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.780 3.220 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.062 4.062 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.085 0.915 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.015 -6.237 10.229 14.993 hybrid contribution -0.808 0.874 -0.961 1.530 sum -9.823 -5.363 9.268 14.531 Atomic orbital electron populations 1.23328 0.76559 1.05548 1.02106 1.86025 1.23430 1.26554 1.88962 1.18999 0.92260 0.84814 0.97362 1.21366 1.00948 0.91616 1.08740 1.21131 0.93509 0.98205 0.97882 1.19759 0.94122 0.95149 1.02987 1.20419 0.98052 0.92211 0.97272 1.20449 0.92095 0.97997 1.07757 1.21264 0.87660 0.93425 1.01986 1.62717 1.55658 1.01240 1.05763 1.19032 0.92879 0.94188 0.82844 1.00086 1.21714 0.98479 0.95949 1.02393 1.21410 1.39169 0.99870 0.94292 0.92220 1.25654 0.95651 1.00784 0.96575 1.70036 1.46110 1.37548 1.02511 0.85610 0.78050 0.80492 0.77805 1.20457 1.21379 1.19013 1.22008 0.91418 0.96148 0.96580 1.20919 0.97799 0.93494 1.02021 0.92297 0.86077 0.91520 0.83001 0.84357 0.84837 0.90184 0.88341 0.92176 0.94887 0.95959 0.93220 0.90357 0.91059 0.89400 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.82 113.37 1.11 1.43 16 2 O -0.34 -9.07 10.50 -92.48 -0.97 -10.04 16 3 C 0.11 3.41 6.68 22.46 0.15 3.56 16 4 C -0.21 -5.89 9.04 22.32 0.20 -5.69 16 5 C -0.09 -2.80 9.65 22.32 0.22 -2.59 16 6 C -0.12 -4.37 5.05 -19.82 -0.10 -4.47 16 7 C -0.08 -2.84 5.26 -19.87 -0.10 -2.94 16 8 C -0.16 -5.50 9.59 22.43 0.22 -5.29 16 9 C 0.09 3.13 5.38 85.59 0.46 3.59 16 10 N -0.53 -22.67 4.88 -880.28 -4.29 -26.96 16 11 C 0.22 11.00 1.35 44.17 0.06 11.05 16 12 H -0.02 -1.04 5.69 -2.38 -0.01 -1.05 16 13 C -0.13 -6.42 8.69 71.98 0.63 -5.79 16 14 C -0.51 -27.57 7.48 25.60 0.19 -27.38 16 15 H 0.06 3.19 6.41 -2.91 -0.02 3.18 16 16 C 0.01 0.63 5.29 84.65 0.45 1.08 16 17 N -0.92 -53.54 11.29 21.45 0.24 -53.30 16 18 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.07 2.52 5.54 86.22 0.48 3.00 16 23 C -0.10 -3.87 5.14 29.82 0.15 -3.72 16 24 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 25 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 27 H 0.15 3.23 6.32 -2.91 -0.02 3.21 16 28 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.08 3.00 5.96 -2.39 -0.01 2.99 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.06 3.36 5.93 -2.39 -0.01 3.35 16 33 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.02 1.01 6.54 -2.39 -0.02 0.99 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 37 H 0.07 2.85 6.54 -2.39 -0.02 2.84 16 38 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.06 2.61 6.52 -2.39 -0.02 2.59 16 Total: -1.00 -63.57 301.75 2.15 -61.41 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.04 Total: 17.38 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 4.11 Total: -34.14 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -4.05 Total: -80.26 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.97 Total: -10.04 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.57 2.15 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.929 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds