Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99583 * 2 1 4 4 C 1.38750 * 120.05558 * 5.24014 * 3 2 1 5 5 C 1.38121 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05903 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.10977 * 359.70221 * 6 5 4 8 8 C 1.38169 * 120.05621 * 0.55443 * 7 6 5 9 9 C 1.50695 * 120.02907 * 179.74852 * 8 7 6 10 10 C 1.53001 * 109.47138 * 263.70329 * 9 8 7 11 11 H 1.08998 * 109.99824 * 305.90162 * 10 9 8 12 12 C 1.54321 * 109.77287 * 67.05314 * 10 9 8 13 13 C 1.55155 * 102.86076 * 141.88972 * 12 10 9 14 14 C 1.54908 * 101.57983 * 324.30061 * 13 12 10 15 15 N 1.47020 * 109.88358 * 184.80324 * 10 9 8 16 16 C 1.36934 * 125.64756 * 61.67980 * 15 10 9 17 17 H 1.07994 * 120.00455 * 17.67970 * 16 15 10 18 18 C 1.38815 * 119.99827 * 197.67990 * 16 15 10 19 19 N 1.31617 * 119.99857 * 8.11102 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 187.83811 * 18 16 15 21 21 H 1.48503 * 109.47029 * 64.99938 * 20 18 16 22 22 H 1.48495 * 109.46987 * 184.99777 * 20 18 16 23 23 H 1.48502 * 109.46914 * 305.00070 * 20 18 16 24 24 H 1.08992 * 109.47172 * 299.08478 * 1 2 3 25 25 H 1.09002 * 109.47223 * 59.09048 * 1 2 3 26 26 H 1.08999 * 109.46640 * 179.08565 * 1 2 3 27 27 H 1.07998 * 120.02972 * 0.04426 * 4 3 2 28 28 H 1.08005 * 119.97211 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.94918 * 179.97438 * 6 5 4 30 30 H 1.08008 * 119.97417 * 180.27773 * 7 6 5 31 31 H 1.09000 * 109.47366 * 143.70458 * 9 8 7 32 32 H 1.09000 * 109.47549 * 23.70301 * 9 8 7 33 33 H 1.08993 * 110.92575 * 23.46814 * 12 10 9 34 34 H 1.09005 * 110.73849 * 260.21924 * 12 10 9 35 35 H 1.09009 * 111.00013 * 206.22968 * 13 12 10 36 36 H 1.08996 * 111.00934 * 82.38022 * 13 12 10 37 37 H 1.08997 * 110.36768 * 278.17291 * 14 13 12 38 38 H 1.09011 * 110.45632 * 155.90016 * 14 13 12 39 39 H 0.97000 * 120.00148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2957 2.3730 0.1097 5 6 1.9251 3.6025 0.1089 6 6 3.3015 3.6759 -0.0016 7 6 4.0517 2.5194 -0.1054 8 6 3.4265 1.2872 -0.1104 9 6 4.2444 0.0271 -0.2292 10 6 4.2775 -0.4235 -1.6910 11 1 3.2618 -0.5179 -2.0750 12 6 5.0674 0.5990 -2.5347 13 6 5.8403 -0.3016 -3.5342 14 6 6.1642 -1.5351 -2.6549 15 7 4.9756 -1.7127 -1.8012 16 6 4.5833 -2.8855 -1.2130 17 1 3.5709 -2.9975 -0.8544 18 6 5.4872 -3.9303 -1.0778 19 7 6.7576 -3.7430 -1.3663 20 14 4.9017 -5.6001 -0.4792 21 1 3.9688 -6.1842 -1.4761 22 1 6.0693 -6.5013 -0.3066 23 1 4.2017 -5.4423 0.8209 24 1 -0.3633 0.4995 0.8980 25 1 -0.3634 0.5279 -0.8817 26 1 -0.3632 -1.0276 -0.0164 27 1 0.2207 2.3162 0.1959 28 1 1.3416 4.5074 0.1938 29 1 3.7918 4.6383 -0.0024 30 1 5.1270 2.5791 -0.1870 31 1 3.7962 -0.7560 0.3823 32 1 5.2606 0.2196 0.1147 33 1 5.7592 1.1660 -1.9119 34 1 4.3894 1.2688 -3.0638 35 1 6.7537 0.1866 -3.8742 36 1 5.2096 -0.5786 -4.3789 37 1 7.0457 -1.3438 -2.0430 38 1 6.3194 -2.4165 -3.2774 39 1 7.3893 -4.4730 -1.2715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069683382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = 4.517926 kcal Electronic energy + Delta-G solvation = -20020.199327 eV Core-core repulsion = 17121.459090 eV Total energy + Delta-G solvation = -2898.740238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03191 -37.63836 -36.93752 -32.93705 -32.09992 -29.95135 -29.33346 -28.31090 -27.03061 -24.94766 -24.00368 -21.92115 -21.16519 -20.07934 -19.15704 -17.67952 -16.62870 -15.91457 -15.58524 -15.48327 -14.81565 -14.36081 -14.13764 -13.80674 -13.55565 -12.98080 -12.71231 -12.37217 -12.04213 -11.80660 -11.76341 -11.62958 -11.20896 -10.99131 -10.88626 -10.81235 -10.70963 -10.40192 -10.04397 -9.89924 -9.78123 -9.63654 -9.55073 -8.58996 -8.46759 -7.85149 -6.62704 -5.67014 -3.00796 1.55585 1.67245 3.45483 3.49669 3.50971 3.54413 3.99712 4.57257 4.94468 5.01682 5.18685 5.24721 5.25026 5.47930 5.52267 5.57950 5.58884 5.71018 5.73450 5.84811 5.88873 6.00677 6.21058 6.25873 6.41018 6.46505 6.56228 6.59769 6.69556 6.71484 6.80635 6.81907 7.05069 7.16476 7.32862 7.54724 7.67993 7.73913 7.87927 8.38613 9.29460 9.91515 10.62935 11.46572 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.006533 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.281218 B = 4284.708110 C = 5178.205779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.125 3.875 4 C -0.210 4.210 5 C -0.100 4.100 6 C -0.158 4.158 7 C -0.085 4.085 8 C -0.090 4.090 9 C -0.082 4.082 10 C 0.173 3.827 11 H 0.033 0.967 12 C -0.122 4.122 13 C -0.149 4.149 14 C 0.174 3.826 15 N -0.592 5.592 16 C -0.224 4.224 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 13.225 1.183 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.118 4.118 6 C -0.176 4.176 7 C -0.103 4.103 8 C -0.091 4.091 9 C -0.121 4.121 10 C 0.065 3.935 11 H 0.051 0.949 12 C -0.160 4.160 13 C -0.188 4.188 14 C 0.049 3.951 15 N -0.315 5.315 16 C -0.352 4.352 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.563 5.563 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.210 1.210 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.787 12.781 1.227 15.558 hybrid contribution -0.560 -0.681 0.434 0.983 sum -9.347 12.100 1.660 15.380 Atomic orbital electron populations 1.23002 0.79265 1.03754 1.00624 1.86225 1.20466 1.26512 1.88388 1.18928 0.92097 0.84140 0.96856 1.21152 0.99658 0.92585 1.09505 1.20773 0.94671 0.96553 0.99801 1.20974 0.93940 0.98151 1.04518 1.20939 0.99848 0.91048 0.98464 1.19636 0.90858 0.96766 1.01853 1.21070 0.97837 0.92568 1.00674 1.20871 0.95040 0.86308 0.91273 0.94909 1.22574 0.98608 0.97060 0.97784 1.22989 0.98853 0.98848 0.98078 1.21305 0.89659 0.93282 0.90840 1.44546 1.27678 1.03559 1.55750 1.18935 0.94737 0.89186 1.32386 0.90908 1.24914 0.95099 0.98948 1.01237 1.69945 1.01103 1.31173 1.54037 0.86279 0.77269 0.84024 0.78700 1.21312 1.21716 1.20984 0.93223 0.93031 0.88404 0.86066 0.86536 0.86458 0.85630 0.90511 0.91746 0.92056 0.92779 0.92523 0.92566 0.95092 0.92791 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.82 101.05 0.99 1.33 16 2 O -0.30 -5.13 9.65 -19.43 -0.19 -5.32 16 3 C 0.13 2.05 6.65 -39.22 -0.26 1.79 16 4 C -0.21 -2.84 9.05 -39.44 -0.36 -3.20 16 5 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 6 C -0.16 -2.01 10.04 -39.56 -0.40 -2.40 16 7 C -0.08 -1.25 9.07 -39.60 -0.36 -1.61 16 8 C -0.09 -1.54 4.79 -104.47 -0.50 -2.04 16 9 C -0.08 -1.67 4.56 -27.88 -0.13 -1.80 16 10 C 0.17 3.76 3.16 -66.95 -0.21 3.55 16 11 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 12 C -0.12 -2.28 5.70 -24.90 -0.14 -2.42 16 13 C -0.15 -2.93 7.08 -24.58 -0.17 -3.11 16 14 C 0.17 4.33 5.36 -2.53 -0.01 4.31 16 15 N -0.59 -15.44 3.12 -162.58 -0.51 -15.95 16 16 C -0.22 -6.35 9.68 -15.06 -0.15 -6.49 16 17 H 0.07 2.04 7.84 -52.49 -0.41 1.63 16 18 C 0.00 -0.14 5.39 -17.43 -0.09 -0.24 16 19 N -0.92 -27.38 10.98 55.49 0.61 -26.77 16 20 Si 0.91 22.51 29.56 -169.99 -5.02 17.48 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.05 0.49 7.49 -51.93 -0.39 0.10 16 25 H 0.05 0.54 7.84 -51.93 -0.41 0.13 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.12 1.34 6.31 -52.49 -0.33 1.01 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.13 1.70 7.78 -52.48 -0.41 1.29 16 31 H 0.08 1.75 7.44 -51.93 -0.39 1.36 16 32 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 33 H 0.06 1.08 7.27 -51.93 -0.38 0.70 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.05 1.47 7.44 -51.92 -0.39 1.08 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -31.46 315.41 -8.56 -40.02 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.01 Total: -0.27 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.19 Total: -13.95 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.10 Total: -42.72 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.46 -8.56 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069683382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.536 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds