Wall clock time and date at job start Mon Mar 30 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99583 * 2 1 4 4 C 1.38750 * 120.05558 * 5.24014 * 3 2 1 5 5 C 1.38121 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05903 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.10977 * 359.70221 * 6 5 4 8 8 C 1.38169 * 120.05621 * 0.55443 * 7 6 5 9 9 C 1.50695 * 120.02907 * 179.74852 * 8 7 6 10 10 C 1.53001 * 109.47138 * 263.70329 * 9 8 7 11 11 H 1.08998 * 109.99824 * 305.90162 * 10 9 8 12 12 C 1.54321 * 109.77287 * 67.05314 * 10 9 8 13 13 C 1.55155 * 102.86076 * 141.88972 * 12 10 9 14 14 C 1.54908 * 101.57983 * 324.30061 * 13 12 10 15 15 N 1.47020 * 109.88358 * 184.80324 * 10 9 8 16 16 C 1.36934 * 125.64756 * 61.67980 * 15 10 9 17 17 H 1.07994 * 120.00455 * 17.67970 * 16 15 10 18 18 C 1.38815 * 119.99827 * 197.67990 * 16 15 10 19 19 N 1.31617 * 119.99857 * 8.11102 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 187.83811 * 18 16 15 21 21 H 1.48503 * 109.47029 * 64.99938 * 20 18 16 22 22 H 1.48495 * 109.46987 * 184.99777 * 20 18 16 23 23 H 1.48502 * 109.46914 * 305.00070 * 20 18 16 24 24 H 1.08992 * 109.47172 * 299.08478 * 1 2 3 25 25 H 1.09002 * 109.47223 * 59.09048 * 1 2 3 26 26 H 1.08999 * 109.46640 * 179.08565 * 1 2 3 27 27 H 1.07998 * 120.02972 * 0.04426 * 4 3 2 28 28 H 1.08005 * 119.97211 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.94918 * 179.97438 * 6 5 4 30 30 H 1.08008 * 119.97417 * 180.27773 * 7 6 5 31 31 H 1.09000 * 109.47366 * 143.70458 * 9 8 7 32 32 H 1.09000 * 109.47549 * 23.70301 * 9 8 7 33 33 H 1.08993 * 110.92575 * 23.46814 * 12 10 9 34 34 H 1.09005 * 110.73849 * 260.21924 * 12 10 9 35 35 H 1.09009 * 111.00013 * 206.22968 * 13 12 10 36 36 H 1.08996 * 111.00934 * 82.38022 * 13 12 10 37 37 H 1.08997 * 110.36768 * 278.17291 * 14 13 12 38 38 H 1.09011 * 110.45632 * 155.90016 * 14 13 12 39 39 H 0.97000 * 120.00148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2957 2.3730 0.1097 5 6 1.9251 3.6025 0.1089 6 6 3.3015 3.6759 -0.0016 7 6 4.0517 2.5194 -0.1054 8 6 3.4265 1.2872 -0.1104 9 6 4.2444 0.0271 -0.2292 10 6 4.2775 -0.4235 -1.6910 11 1 3.2618 -0.5179 -2.0750 12 6 5.0674 0.5990 -2.5347 13 6 5.8403 -0.3016 -3.5342 14 6 6.1642 -1.5351 -2.6549 15 7 4.9756 -1.7127 -1.8012 16 6 4.5833 -2.8855 -1.2130 17 1 3.5709 -2.9975 -0.8544 18 6 5.4872 -3.9303 -1.0778 19 7 6.7576 -3.7430 -1.3663 20 14 4.9017 -5.6001 -0.4792 21 1 3.9688 -6.1842 -1.4761 22 1 6.0693 -6.5013 -0.3066 23 1 4.2017 -5.4423 0.8209 24 1 -0.3633 0.4995 0.8980 25 1 -0.3634 0.5279 -0.8817 26 1 -0.3632 -1.0276 -0.0164 27 1 0.2207 2.3162 0.1959 28 1 1.3416 4.5074 0.1938 29 1 3.7918 4.6383 -0.0024 30 1 5.1270 2.5791 -0.1870 31 1 3.7962 -0.7560 0.3823 32 1 5.2606 0.2196 0.1147 33 1 5.7592 1.1660 -1.9119 34 1 4.3894 1.2688 -3.0638 35 1 6.7537 0.1866 -3.8742 36 1 5.2096 -0.5786 -4.3789 37 1 7.0457 -1.3438 -2.0430 38 1 6.3194 -2.4165 -3.2774 39 1 7.3893 -4.4730 -1.2715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069683382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:47 Heat of formation + Delta-G solvation = -13.529563 kcal Electronic energy + Delta-G solvation = -20020.981925 eV Core-core repulsion = 17121.459090 eV Total energy + Delta-G solvation = -2899.522835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18556 -39.28984 -38.15014 -34.75088 -33.74096 -31.33231 -30.92847 -29.81943 -28.05233 -26.75017 -25.83366 -23.00154 -22.41548 -21.89958 -20.88043 -18.79153 -18.66927 -17.10263 -17.03724 -16.61758 -16.46860 -15.94711 -15.70467 -15.24262 -14.81119 -14.44557 -14.03082 -13.86549 -13.79612 -13.38505 -13.22940 -12.90659 -12.83414 -12.67891 -12.57310 -12.19598 -12.04154 -11.97899 -11.85295 -11.64981 -11.43471 -11.36758 -11.35498 -10.64785 -9.69833 -9.02372 -8.71026 -7.86808 -5.22873 0.47358 0.59417 1.42934 1.46335 1.52825 2.50102 2.52477 2.90906 3.32780 3.65671 3.93727 4.00820 4.07886 4.13836 4.27913 4.31481 4.34091 4.40126 4.48952 4.58698 4.66480 4.71625 4.75398 4.78406 4.87077 4.99316 5.09797 5.13254 5.22431 5.35613 5.46113 5.49531 5.61216 5.63040 5.65830 5.73791 5.76413 6.01212 6.26988 6.60632 7.12271 7.80783 8.50327 9.25745 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.006533 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.281218 B = 4284.708110 C = 5178.205779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.106 3.894 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.154 4.154 7 C -0.087 4.087 8 C -0.121 4.121 9 C -0.063 4.063 10 C 0.169 3.831 11 H 0.018 0.982 12 C -0.108 4.108 13 C -0.134 4.134 14 C 0.178 3.822 15 N -0.613 5.613 16 C -0.235 4.235 17 H 0.066 0.934 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.133 0.867 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.003 0.997 38 H 0.019 0.981 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 16.072 1.087 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.256 6.256 3 C 0.061 3.939 4 C -0.228 4.228 5 C -0.107 4.107 6 C -0.172 4.172 7 C -0.106 4.106 8 C -0.123 4.123 9 C -0.102 4.102 10 C 0.063 3.937 11 H 0.036 0.964 12 C -0.146 4.146 13 C -0.172 4.172 14 C 0.053 3.947 15 N -0.338 5.338 16 C -0.364 4.364 17 H 0.084 0.916 18 C -0.254 4.254 19 N -0.594 5.594 20 Si 0.799 3.201 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.203 1.203 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.151 0.849 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.037 0.963 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.407 15.663 1.132 18.840 hybrid contribution -0.168 -1.469 0.494 1.559 sum -10.575 14.194 1.626 17.775 Atomic orbital electron populations 1.23257 0.77015 1.04805 1.02234 1.86170 1.23073 1.27673 1.88732 1.19168 0.92101 0.84980 0.97696 1.21459 1.00866 0.91957 1.08547 1.21275 0.94885 0.97355 0.97197 1.21346 0.94277 0.98576 1.02966 1.21082 1.00502 0.90831 0.98137 1.19441 0.91315 0.95963 1.05537 1.20659 0.97331 0.93555 0.98682 1.20981 0.94247 0.85560 0.92955 0.96438 1.22508 0.98642 0.96296 0.97104 1.22877 1.00514 0.96451 0.97400 1.21141 0.88616 0.94355 0.90637 1.44822 1.28129 1.04736 1.56068 1.19163 0.94600 0.90641 1.32016 0.91604 1.25689 0.95267 1.02402 1.02012 1.70130 1.02020 1.31813 1.55424 0.85266 0.76776 0.79647 0.78379 1.20521 1.21670 1.20312 0.91225 0.91616 0.87844 0.83615 0.82804 0.83229 0.84940 0.94459 0.93117 0.90769 0.90074 0.89439 0.91881 0.97928 0.96276 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.82 113.37 1.11 1.59 16 2 O -0.34 -11.77 9.65 -92.44 -0.89 -12.66 16 3 C 0.11 3.38 6.65 22.51 0.15 3.53 16 4 C -0.21 -5.02 9.05 22.36 0.20 -4.81 16 5 C -0.09 -1.79 10.04 22.25 0.22 -1.56 16 6 C -0.15 -3.27 10.04 22.28 0.22 -3.05 16 7 C -0.09 -2.40 9.07 22.25 0.20 -2.19 16 8 C -0.12 -4.14 4.79 -19.77 -0.09 -4.24 16 9 C -0.06 -2.67 4.56 29.85 0.14 -2.54 16 10 C 0.17 7.55 3.16 45.34 0.14 7.69 16 11 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 12 C -0.11 -3.88 5.70 31.78 0.18 -3.70 16 13 C -0.13 -5.14 7.08 31.99 0.23 -4.92 16 14 C 0.18 9.16 5.36 86.86 0.47 9.62 16 15 N -0.61 -33.40 3.12 -668.27 -2.08 -35.48 16 16 C -0.23 -13.95 9.68 84.03 0.81 -13.14 16 17 H 0.07 3.90 7.84 -2.91 -0.02 3.87 16 18 C -0.06 -3.57 5.39 84.86 0.46 -3.11 16 19 N -0.95 -59.00 10.98 21.65 0.24 -58.76 16 20 Si 0.97 47.78 29.56 68.60 2.03 49.81 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H 0.07 1.24 7.49 -2.39 -0.02 1.23 16 25 H 0.07 1.25 7.84 -2.39 -0.02 1.23 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.15 2.67 6.31 -2.91 -0.02 2.65 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.13 3.33 7.78 -2.91 -0.02 3.31 16 31 H 0.04 1.82 7.44 -2.39 -0.02 1.80 16 32 H 0.05 2.20 7.93 -2.39 -0.02 2.19 16 33 H 0.07 2.48 7.27 -2.39 -0.02 2.47 16 34 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.00 0.15 7.90 -2.39 -0.02 0.13 16 38 H 0.02 1.08 7.44 -2.38 -0.02 1.06 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -72.35 315.41 4.75 -67.61 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.01 Total: 10.30 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.44 Total: -20.81 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -1.85 Total: -94.24 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.89 Total: -12.66 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -72.35 4.75 -67.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069683382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.077 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds