Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47129 * 2 1 4 4 C 1.36937 * 120.00062 * 84.39049 * 3 2 1 5 5 H 1.07993 * 120.00471 * 161.71486 * 4 3 2 6 6 C 1.38816 * 119.99816 * 341.71004 * 4 3 2 7 7 N 1.31619 * 120.00006 * 26.91541 * 6 4 3 8 8 Si 1.86804 * 120.00000 * 206.91427 * 6 4 3 9 9 H 1.48500 * 109.47183 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47058 * 120.00181 * 8 6 4 11 11 H 1.48505 * 109.46790 * 240.00121 * 8 6 4 12 12 C 1.46501 * 120.00253 * 264.38917 * 3 2 1 13 13 C 1.52998 * 109.47153 * 265.14954 * 12 3 2 14 14 H 1.09003 * 109.33243 * 301.85756 * 13 12 3 15 15 O 1.42721 * 109.33807 * 61.53108 * 13 12 3 16 16 C 1.43223 * 113.13703 * 171.78220 * 15 13 12 17 17 C 1.52968 * 108.46085 * 289.29233 * 16 15 13 18 18 C 1.50742 * 109.71200 * 49.25535 * 17 16 15 19 19 C 1.38594 * 118.76493 * 163.07786 * 18 17 16 20 20 C 1.38071 * 120.28072 * 179.81695 * 19 18 17 21 21 C 1.38262 * 119.85796 * 359.97438 * 20 19 18 22 22 C 1.37811 * 119.87811 * 359.97438 * 21 20 19 23 23 C 1.37823 * 121.41027 * 342.98328 * 18 17 16 24 24 H 1.08996 * 109.47427 * 307.40185 * 1 2 3 25 25 H 1.09001 * 109.47078 * 67.40398 * 1 2 3 26 26 H 1.09007 * 109.46805 * 187.40050 * 1 2 3 27 27 H 1.08993 * 109.47783 * 239.99691 * 2 1 3 28 28 H 1.09007 * 109.47099 * 119.99615 * 2 1 3 29 29 H 0.97004 * 120.00052 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47008 * 145.14462 * 12 3 2 31 31 H 1.09001 * 109.46490 * 25.14369 * 12 3 2 32 32 H 1.08992 * 109.63533 * 169.59650 * 16 15 13 33 33 H 1.08997 * 109.63503 * 48.97915 * 16 15 13 34 34 H 1.08998 * 109.42477 * 169.31330 * 17 16 15 35 35 H 1.09005 * 109.42664 * 289.19459 * 17 16 15 36 36 H 1.08004 * 119.86098 * 359.79424 * 19 18 17 37 37 H 1.07999 * 120.07045 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.04941 * 180.12014 * 21 20 19 39 39 H 1.07997 * 119.79428 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1373 2.0654 1.1802 5 1 2.7567 2.9484 1.2325 6 6 1.4614 1.6239 2.3095 7 7 1.1589 0.3496 2.4392 8 14 0.9814 2.8385 3.6452 9 1 1.4340 4.2000 3.2621 10 1 -0.4945 2.8351 3.8101 11 1 1.6235 2.4458 4.9253 12 6 2.3795 2.0305 -1.2626 13 6 3.8834 1.8813 -1.5009 14 1 4.4267 2.3217 -0.6648 15 8 4.2110 0.4958 -1.6003 16 6 5.5643 0.2654 -2.0088 17 6 5.7002 0.6611 -3.4801 18 6 5.1092 2.0311 -3.6949 19 6 5.4353 2.7246 -4.8497 20 6 4.9089 3.9800 -5.0800 21 6 4.0524 4.5476 -4.1548 22 6 3.7271 3.8579 -3.0069 23 6 4.2573 2.5986 -2.7720 24 1 -0.3634 0.6242 0.8163 25 1 -0.3633 0.3949 -0.9488 26 1 -0.3633 -1.0192 0.1324 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6870 0.0410 3.2286 30 1 2.1225 3.0886 -1.2135 31 1 1.8336 1.5616 -2.0813 32 1 5.8082 -0.7901 -1.8892 33 1 6.2379 0.8712 -1.4028 34 1 6.7546 0.6738 -3.7561 35 1 5.1719 -0.0629 -4.1006 36 1 6.1043 2.2812 -5.5724 37 1 5.1656 4.5176 -5.9808 38 1 3.6374 5.5287 -4.3327 39 1 3.0577 4.3024 -2.2853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071030862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = 8.601045 kcal Electronic energy + Delta-G solvation = -20130.429836 eV Core-core repulsion = 17231.866656 eV Total energy + Delta-G solvation = -2898.563180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06959 -37.23759 -35.80911 -33.12460 -31.88229 -30.85938 -29.55070 -28.81914 -26.46367 -24.09686 -23.50058 -22.82613 -21.29308 -19.83994 -19.74884 -16.99877 -16.57140 -15.74278 -15.59606 -15.04896 -14.81137 -14.21519 -13.87554 -13.53142 -13.23459 -13.16101 -12.97130 -12.41159 -12.13105 -11.90514 -11.73774 -11.63262 -11.22289 -11.05723 -10.85552 -10.74599 -10.53523 -10.38577 -10.25407 -9.87060 -9.70421 -9.23398 -9.10130 -8.60424 -8.42380 -8.16255 -6.70149 -5.65594 -3.03446 1.49813 1.52322 3.42156 3.51902 3.52898 3.88677 4.31750 4.55843 4.81255 4.94353 5.02768 5.15272 5.21717 5.36341 5.42332 5.53469 5.58514 5.72094 5.77494 5.92217 6.01612 6.08870 6.11378 6.18898 6.27680 6.49301 6.58472 6.66827 6.75614 6.76976 6.84872 7.06493 7.15158 7.20691 7.28871 7.75880 7.80861 8.01664 8.04824 8.59902 9.33807 9.97779 10.45313 11.28894 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005905 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.542386 B = 4740.605176 C = 5201.682552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.158 3.842 3 N -0.591 5.591 4 C -0.257 4.257 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.884 5.884 8 Si 0.882 3.118 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.294 1.294 12 C 0.166 3.834 13 C 0.103 3.897 14 H 0.069 0.931 15 O -0.350 6.350 16 C 0.056 3.944 17 C -0.113 4.113 18 C -0.079 4.079 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.098 4.098 24 H 0.065 0.935 25 H 0.006 0.994 26 H 0.024 0.976 27 H 0.009 0.991 28 H 0.106 0.894 29 H 0.250 0.750 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.768 3.255 -12.893 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 N -0.310 5.310 4 C -0.386 4.386 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.221 1.221 12 C 0.037 3.963 13 C 0.042 3.958 14 H 0.087 0.913 15 O -0.268 6.268 16 C -0.022 4.022 17 C -0.150 4.150 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.099 4.099 24 H 0.084 0.916 25 H 0.025 0.975 26 H 0.043 0.957 27 H 0.027 0.973 28 H 0.123 0.877 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.522 2.992 -12.682 15.045 hybrid contribution -0.039 0.938 0.525 1.076 sum 7.483 3.930 -12.157 14.806 Atomic orbital electron populations 1.22242 1.00353 0.98727 0.98582 1.21081 0.91421 0.84496 0.99678 1.44076 1.74891 1.11328 1.00723 1.19151 1.23751 1.07518 0.88186 0.91037 1.24840 1.00006 0.95826 0.98054 1.70170 1.43066 1.11871 1.27786 0.86518 0.78585 0.81996 0.81722 1.20514 1.21590 1.22142 1.20823 0.88787 0.97100 0.89608 1.22157 1.01406 0.81025 0.91261 0.91343 1.88230 1.26653 1.23726 1.88182 1.22517 0.85821 1.01268 0.92550 1.21126 1.00572 0.94042 0.99266 1.19524 0.97623 0.96189 0.94609 1.20999 1.00867 0.95231 0.96980 1.21009 0.98588 0.95771 0.99360 1.21016 0.98681 0.99856 0.94679 1.21125 0.99640 0.94340 0.97769 1.20560 0.96379 0.95366 0.97563 0.91611 0.97469 0.95739 0.97317 0.87661 0.93858 0.92150 0.93396 0.88988 0.93342 0.90483 0.90077 0.86560 0.86532 0.86284 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.47 37.16 0.35 -3.03 16 2 C 0.16 4.00 5.46 -4.04 -0.02 3.98 16 3 N -0.59 -14.84 2.45 -173.24 -0.42 -15.27 16 4 C -0.26 -6.97 9.64 -15.06 -0.15 -7.11 16 5 H 0.07 1.90 7.96 -52.49 -0.42 1.48 16 6 C 0.01 0.30 4.63 -17.43 -0.08 0.22 16 7 N -0.88 -24.90 8.50 55.49 0.47 -24.43 16 8 Si 0.88 21.46 29.63 -169.99 -5.04 16.43 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 C 0.17 3.49 4.95 -4.04 -0.02 3.47 16 13 C 0.10 1.97 2.96 -27.90 -0.08 1.89 16 14 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 15 O -0.35 -6.90 9.73 -35.23 -0.34 -7.25 16 16 C 0.06 0.84 6.85 37.14 0.25 1.10 16 17 C -0.11 -1.47 6.01 -27.88 -0.17 -1.64 16 18 C -0.08 -1.17 5.77 -104.62 -0.60 -1.77 16 19 C -0.12 -1.56 9.67 -39.51 -0.38 -1.94 16 20 C -0.13 -1.56 10.05 -39.63 -0.40 -1.96 16 21 C -0.12 -1.59 10.04 -39.73 -0.40 -1.99 16 22 C -0.11 -1.66 9.07 -39.59 -0.36 -2.01 16 23 C -0.10 -1.61 5.46 -104.64 -0.57 -2.18 16 24 H 0.06 1.75 6.25 -51.93 -0.32 1.43 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.01 0.21 7.65 -51.93 -0.40 -0.19 16 28 H 0.11 2.98 5.80 -51.92 -0.30 2.68 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.20 6.38 -51.93 -0.33 0.87 16 31 H 0.05 1.00 8.03 -51.93 -0.42 0.59 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.13 1.85 6.49 -52.49 -0.34 1.51 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -29.44 309.64 -9.18 -38.62 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.89 Total: 0.21 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.63 Total: -12.98 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.05 Total: -39.70 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.34 Total: -7.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.44 -9.18 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071030862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.225 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds