Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47129 * 2 1 4 4 C 1.36937 * 120.00062 * 84.39049 * 3 2 1 5 5 H 1.07993 * 120.00471 * 161.71486 * 4 3 2 6 6 C 1.38816 * 119.99816 * 341.71004 * 4 3 2 7 7 N 1.31619 * 120.00006 * 26.91541 * 6 4 3 8 8 Si 1.86804 * 120.00000 * 206.91427 * 6 4 3 9 9 H 1.48500 * 109.47183 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47058 * 120.00181 * 8 6 4 11 11 H 1.48505 * 109.46790 * 240.00121 * 8 6 4 12 12 C 1.46501 * 120.00253 * 264.38917 * 3 2 1 13 13 C 1.52998 * 109.47153 * 265.14954 * 12 3 2 14 14 H 1.09003 * 109.33243 * 301.85756 * 13 12 3 15 15 O 1.42721 * 109.33807 * 61.53108 * 13 12 3 16 16 C 1.43223 * 113.13703 * 171.78220 * 15 13 12 17 17 C 1.52968 * 108.46085 * 289.29233 * 16 15 13 18 18 C 1.50742 * 109.71200 * 49.25535 * 17 16 15 19 19 C 1.38594 * 118.76493 * 163.07786 * 18 17 16 20 20 C 1.38071 * 120.28072 * 179.81695 * 19 18 17 21 21 C 1.38262 * 119.85796 * 359.97438 * 20 19 18 22 22 C 1.37811 * 119.87811 * 359.97438 * 21 20 19 23 23 C 1.37823 * 121.41027 * 342.98328 * 18 17 16 24 24 H 1.08996 * 109.47427 * 307.40185 * 1 2 3 25 25 H 1.09001 * 109.47078 * 67.40398 * 1 2 3 26 26 H 1.09007 * 109.46805 * 187.40050 * 1 2 3 27 27 H 1.08993 * 109.47783 * 239.99691 * 2 1 3 28 28 H 1.09007 * 109.47099 * 119.99615 * 2 1 3 29 29 H 0.97004 * 120.00052 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47008 * 145.14462 * 12 3 2 31 31 H 1.09001 * 109.46490 * 25.14369 * 12 3 2 32 32 H 1.08992 * 109.63533 * 169.59650 * 16 15 13 33 33 H 1.08997 * 109.63503 * 48.97915 * 16 15 13 34 34 H 1.08998 * 109.42477 * 169.31330 * 17 16 15 35 35 H 1.09005 * 109.42664 * 289.19459 * 17 16 15 36 36 H 1.08004 * 119.86098 * 359.79424 * 19 18 17 37 37 H 1.07999 * 120.07045 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.04941 * 180.12014 * 21 20 19 39 39 H 1.07997 * 119.79428 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1373 2.0654 1.1802 5 1 2.7567 2.9484 1.2325 6 6 1.4614 1.6239 2.3095 7 7 1.1589 0.3496 2.4392 8 14 0.9814 2.8385 3.6452 9 1 1.4340 4.2000 3.2621 10 1 -0.4945 2.8351 3.8101 11 1 1.6235 2.4458 4.9253 12 6 2.3795 2.0305 -1.2626 13 6 3.8834 1.8813 -1.5009 14 1 4.4267 2.3217 -0.6648 15 8 4.2110 0.4958 -1.6003 16 6 5.5643 0.2654 -2.0088 17 6 5.7002 0.6611 -3.4801 18 6 5.1092 2.0311 -3.6949 19 6 5.4353 2.7246 -4.8497 20 6 4.9089 3.9800 -5.0800 21 6 4.0524 4.5476 -4.1548 22 6 3.7271 3.8579 -3.0069 23 6 4.2573 2.5986 -2.7720 24 1 -0.3634 0.6242 0.8163 25 1 -0.3633 0.3949 -0.9488 26 1 -0.3633 -1.0192 0.1324 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.6870 0.0410 3.2286 30 1 2.1225 3.0886 -1.2135 31 1 1.8336 1.5616 -2.0813 32 1 5.8082 -0.7901 -1.8892 33 1 6.2379 0.8712 -1.4028 34 1 6.7546 0.6738 -3.7561 35 1 5.1719 -0.0629 -4.1006 36 1 6.1043 2.2812 -5.5724 37 1 5.1656 4.5176 -5.9808 38 1 3.6374 5.5287 -4.3327 39 1 3.0577 4.3024 -2.2853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071030862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = -6.702474 kcal Electronic energy + Delta-G solvation = -20131.093447 eV Core-core repulsion = 17231.866656 eV Total energy + Delta-G solvation = -2899.226791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26241 -38.54046 -37.62704 -34.50908 -33.24124 -32.59319 -31.17027 -30.19582 -28.07998 -25.83715 -24.67424 -24.34039 -22.73721 -21.67366 -20.89262 -18.71623 -18.01674 -17.11209 -17.06216 -16.55183 -16.12166 -15.51613 -15.49647 -15.14412 -14.69758 -14.46247 -14.33227 -13.89042 -13.60395 -13.48822 -13.22406 -13.02823 -12.80226 -12.70517 -12.58667 -12.43659 -12.26832 -11.84936 -11.80841 -11.70988 -11.47776 -11.21203 -10.44956 -10.27666 -9.66819 -9.50836 -8.68960 -7.73701 -5.12960 0.43351 0.48836 1.46679 1.51314 1.59586 2.54330 2.82585 3.00146 3.27702 3.58875 3.78827 3.93444 4.00576 4.13499 4.27955 4.30914 4.39569 4.45095 4.60516 4.67167 4.73104 4.76978 4.79351 4.96291 4.98874 5.05626 5.11839 5.15410 5.21273 5.23764 5.29416 5.57870 5.63135 5.68632 5.72849 5.93320 6.00346 6.13782 6.40176 6.51094 7.25371 7.97440 8.41964 9.20029 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.005905 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.542386 B = 4740.605176 C = 5201.682552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.166 3.834 3 N -0.605 5.605 4 C -0.267 4.267 5 H 0.070 0.930 6 C -0.035 4.035 7 N -0.907 5.907 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.292 1.292 11 H -0.296 1.296 12 C 0.167 3.833 13 C 0.117 3.883 14 H 0.039 0.961 15 O -0.383 6.383 16 C 0.047 3.953 17 C -0.106 4.106 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.038 0.962 25 H 0.020 0.980 26 H 0.035 0.965 27 H 0.013 0.987 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.813 4.362 -15.260 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.041 3.959 3 N -0.326 5.326 4 C -0.396 4.396 5 H 0.087 0.913 6 C -0.231 4.231 7 N -0.553 5.553 8 Si 0.773 3.227 9 H -0.196 1.196 10 H -0.219 1.219 11 H -0.224 1.224 12 C 0.040 3.960 13 C 0.056 3.944 14 H 0.057 0.943 15 O -0.302 6.302 16 C -0.029 4.029 17 C -0.142 4.142 18 C -0.093 4.093 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.126 4.126 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.588 4.121 -15.077 17.834 hybrid contribution -0.271 0.600 1.159 1.333 sum 8.318 4.721 -13.918 16.887 Atomic orbital electron populations 1.22054 0.99461 0.98918 0.98090 1.20850 0.92084 0.84732 0.98242 1.44214 1.75556 1.11317 1.01540 1.19364 1.23702 1.07392 0.89125 0.91251 1.25444 1.00419 0.97073 1.00205 1.70327 1.43806 1.12936 1.28246 0.85555 0.77656 0.80306 0.79135 1.19646 1.21910 1.22407 1.20906 0.90276 0.97034 0.87768 1.21638 0.99168 0.81323 0.92268 0.94288 1.88150 1.29344 1.23881 1.88813 1.22787 0.83581 1.02316 0.94247 1.21112 1.02476 0.93313 0.97343 1.19796 0.97396 0.97048 0.95032 1.21357 1.00805 0.95339 0.96500 1.21470 0.96970 0.95525 0.99951 1.21332 0.98534 1.00721 0.93773 1.21201 1.00102 0.94240 0.98891 1.20358 0.98836 0.96261 0.97175 0.94274 0.96107 0.94583 0.96859 0.90794 0.94327 0.91543 0.93511 0.87350 0.93713 0.87352 0.89509 0.83502 0.83073 0.83797 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 9.47 71.98 0.68 -5.48 16 2 C 0.17 8.64 5.46 86.38 0.47 9.11 16 3 N -0.61 -31.31 2.45 -702.02 -1.72 -33.03 16 4 C -0.27 -14.80 9.64 84.03 0.81 -13.99 16 5 H 0.07 3.79 7.96 -2.91 -0.02 3.77 16 6 C -0.04 -1.98 4.63 84.86 0.39 -1.59 16 7 N -0.91 -52.49 8.50 21.65 0.18 -52.31 16 8 Si 0.94 45.06 29.63 68.60 2.03 47.09 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 12 C 0.17 7.24 4.95 86.38 0.43 7.67 16 13 C 0.12 4.62 2.96 29.83 0.09 4.70 16 14 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 15 O -0.38 -15.43 9.73 -148.98 -1.45 -16.89 16 16 C 0.05 1.40 6.85 71.97 0.49 1.89 16 17 C -0.11 -2.51 6.01 29.85 0.18 -2.33 16 18 C -0.09 -2.54 5.77 -19.86 -0.11 -2.66 16 19 C -0.12 -2.64 9.67 22.32 0.22 -2.42 16 20 C -0.12 -2.42 10.05 22.24 0.22 -2.20 16 21 C -0.13 -2.88 10.04 22.17 0.22 -2.65 16 22 C -0.13 -3.68 9.07 22.27 0.20 -3.48 16 23 C -0.13 -4.09 5.46 -19.88 -0.11 -4.19 16 24 H 0.04 2.11 6.25 -2.39 -0.01 2.09 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.01 0.66 7.65 -2.39 -0.02 0.64 16 28 H 0.07 4.35 5.80 -2.38 -0.01 4.33 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.07 2.73 6.38 -2.39 -0.02 2.72 16 31 H 0.05 2.00 8.03 -2.39 -0.02 1.98 16 32 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.12 3.55 6.49 -2.91 -0.02 3.53 16 Total: -1.00 -64.60 309.64 4.25 -60.35 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.02 Total: 12.39 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.18 Total: -17.61 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.54 Total: -85.33 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.45 Total: -16.89 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.60 4.25 -60.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071030862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.649 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds