Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38735 * 120.05254 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94607 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05233 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94156 * 179.97438 * 6 5 4 8 8 H 1.08999 * 110.88461 * 180.70052 * 7 6 5 9 9 C 1.55159 * 111.00405 * 56.82090 * 7 6 5 10 10 C 1.54317 * 102.93714 * 206.42459 * 9 7 6 11 11 H 1.09001 * 109.87953 * 141.61205 * 10 9 7 12 12 C 1.53003 * 109.88132 * 262.76933 * 10 9 7 13 13 N 1.47012 * 107.27815 * 22.19229 * 10 9 7 14 14 C 1.36945 * 125.65322 * 181.00345 * 13 10 9 15 15 H 1.07997 * 119.99529 * 0.02562 * 14 13 10 16 16 C 1.38804 * 120.00064 * 180.02562 * 14 13 10 17 17 N 1.31618 * 120.00168 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47300 * 59.99446 * 18 16 14 20 20 H 1.48499 * 109.47168 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46800 * 299.99584 * 18 16 14 22 22 C 1.47473 * 108.72226 * 1.02421 * 13 10 9 23 23 C 1.38269 * 120.11595 * 359.95530 * 6 5 4 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 6 5 25 25 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 28 28 H 1.08002 * 120.02704 * 359.70561 * 4 3 2 29 29 H 1.08001 * 119.97447 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.71469 * 324.78600 * 9 7 6 31 31 H 1.08998 * 110.71905 * 88.05811 * 9 7 6 32 32 H 1.09006 * 109.46815 * 60.00870 * 12 10 9 33 33 H 1.09002 * 109.47136 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47654 * 300.00947 * 12 10 9 35 35 H 0.97008 * 120.00270 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.40449 * 217.08374 * 22 13 10 37 37 H 1.09004 * 110.34643 * 94.74305 * 22 13 10 38 38 H 1.07992 * 119.97577 * 180.02562 * 23 6 5 39 39 H 1.08005 * 120.02748 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 3.2552 5.8271 0.0115 9 6 4.9454 5.1539 -1.2125 10 6 5.9933 6.1702 -0.7119 11 1 6.9838 5.8872 -1.0683 12 6 5.6384 7.5722 -1.2113 13 7 5.9632 6.1403 0.7576 14 6 6.7316 6.9124 1.5875 15 1 7.4343 7.6188 1.1708 16 6 6.6074 6.7871 2.9643 17 7 5.7507 5.9266 3.4722 18 14 7.6550 7.8408 4.0964 19 1 7.3718 9.2757 3.8397 20 1 7.3342 7.5186 5.5101 21 1 9.0916 7.5661 3.8394 22 6 4.9690 5.1408 1.1905 23 6 1.9210 3.6048 -0.0015 24 6 1.2916 2.3751 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.0208 0.3799 0.0058 29 1 5.1345 2.5750 0.0008 30 1 5.4147 4.1971 -1.4415 31 1 4.4156 5.5428 -2.0821 32 1 4.6553 7.8541 -0.8341 33 1 6.3826 8.2842 -0.8544 34 1 5.6245 7.5771 -2.3012 35 1 5.6641 5.8387 4.4344 36 1 4.4447 5.4874 2.0810 37 1 5.4531 4.1833 1.3827 38 1 1.3342 4.5114 -0.0023 39 1 0.2129 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076390306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = 8.164504 kcal Electronic energy + Delta-G solvation = -19574.865592 eV Core-core repulsion = 16676.283482 eV Total energy + Delta-G solvation = -2898.582110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98816 -38.32482 -36.64132 -32.74646 -31.50741 -30.83829 -29.11078 -28.30624 -27.04561 -24.97088 -24.01924 -22.44171 -21.73672 -19.52050 -19.05464 -18.01635 -16.76481 -16.05175 -15.67073 -15.29973 -14.83289 -14.36859 -13.86509 -13.45830 -13.29704 -13.07896 -12.75677 -12.60944 -12.05662 -12.02142 -11.92817 -11.61117 -11.41609 -11.14672 -10.94739 -10.79109 -10.73305 -10.61076 -10.11437 -9.94250 -9.67380 -9.59800 -9.50836 -8.71385 -8.59136 -7.71415 -6.79380 -5.59875 -3.01479 1.63748 1.73525 3.36822 3.43079 3.47370 3.48682 4.05790 4.52533 4.91996 5.07164 5.08319 5.15139 5.23780 5.37221 5.47058 5.58506 5.63989 5.68075 5.73019 5.86585 5.93701 6.02554 6.16592 6.28359 6.32284 6.36665 6.49364 6.54419 6.65958 6.68604 6.77286 6.91301 7.05471 7.08870 7.23118 7.56557 7.59212 7.69198 7.91861 8.41373 9.27351 9.88799 10.54108 11.43519 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.004950 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.569736 B = 5655.571897 C = 6291.591455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.106 3.894 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.080 4.080 7 C -0.080 4.080 8 H 0.074 0.926 9 C -0.116 4.116 10 C 0.153 3.847 11 H 0.031 0.969 12 C -0.153 4.153 13 N -0.599 5.599 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.012 4.012 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.166 3.834 23 C -0.083 4.083 24 C -0.207 4.207 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.016 0.984 38 H 0.121 0.879 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -7.731 -8.694 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.062 3.938 4 C -0.168 4.168 5 C -0.090 4.090 6 C -0.081 4.081 7 C -0.099 4.099 8 H 0.093 0.907 9 C -0.154 4.154 10 C 0.046 3.954 11 H 0.049 0.951 12 C -0.212 4.212 13 N -0.323 5.323 14 C -0.347 4.347 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.743 3.257 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.041 3.959 23 C -0.101 4.101 24 C -0.226 4.226 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.034 0.966 38 H 0.139 0.861 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.321 -7.884 -8.442 14.843 hybrid contribution 0.253 0.681 0.649 0.974 sum -9.069 -7.204 -7.793 13.959 Atomic orbital electron populations 1.22971 0.79023 1.03370 1.01201 1.86031 1.20889 1.27422 1.89331 1.18957 0.92353 0.83820 0.98662 1.20378 0.91170 0.98533 1.06674 1.20905 1.00297 0.90788 0.96977 1.19816 0.93020 0.95406 0.99819 1.21635 0.97391 0.92119 0.98799 0.90731 1.22691 0.96771 0.99055 0.96849 1.20922 0.95665 0.92725 0.86119 0.95143 1.22216 1.01537 0.99432 0.98022 1.44583 1.44675 1.44248 0.98819 1.19002 1.14346 1.14205 0.87143 0.90598 1.24764 0.99804 0.99521 0.96598 1.69789 1.38268 1.38103 1.10931 0.86191 0.79739 0.79791 0.80017 1.21260 1.21634 1.21284 1.22007 0.88098 0.91599 0.94205 1.20850 0.94174 0.96726 0.98379 1.21106 0.99430 0.92449 1.09604 0.92948 0.88701 0.92832 0.85682 0.85149 0.91942 0.92137 0.93196 0.93178 0.94465 0.93738 0.87720 0.96569 0.86087 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.35 10.50 -19.42 -0.20 -4.56 16 3 C 0.11 1.59 6.69 -39.22 -0.26 1.32 16 4 C -0.15 -2.30 9.99 -39.43 -0.39 -2.69 16 5 C -0.07 -1.20 8.27 -39.61 -0.33 -1.52 16 6 C -0.08 -1.38 5.00 -104.60 -0.52 -1.90 16 7 C -0.08 -1.53 3.26 -89.62 -0.29 -1.82 16 8 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 9 C -0.12 -2.06 5.91 -24.90 -0.15 -2.21 16 10 C 0.15 3.18 3.74 -66.96 -0.25 2.92 16 11 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.15 -2.86 9.09 37.16 0.34 -2.53 16 13 N -0.60 -15.18 3.14 -162.55 -0.51 -15.69 16 14 C -0.22 -6.05 9.82 -15.06 -0.15 -6.20 16 15 H 0.08 2.04 7.74 -52.49 -0.41 1.63 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 18 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.17 4.01 5.30 -2.50 -0.01 3.99 16 23 C -0.08 -1.28 9.68 -39.61 -0.38 -1.66 16 24 C -0.21 -2.91 9.04 -39.44 -0.36 -3.27 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.13 2.19 7.01 -52.49 -0.37 1.82 16 30 H 0.06 1.06 6.97 -51.93 -0.36 0.70 16 31 H 0.06 0.95 7.83 -51.93 -0.41 0.54 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 37 H 0.02 0.42 6.85 -51.93 -0.36 0.06 16 38 H 0.12 1.66 7.98 -52.49 -0.42 1.24 16 39 H 0.12 1.37 6.30 -52.48 -0.33 1.04 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -30.46 312.38 -8.16 -38.62 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.82 Total: 0.92 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.86 Total: -14.72 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.05 Total: -42.14 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.46 -8.16 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076390306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.784 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds